rna5674, rna5674 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5674
Unique Name	rna5674
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1251
Alignment location	CM002466.1:545667..548185 +

Link to JBrowse

Properties


Property Name	Value
Product	ribulose-phosphate 3-epimerase
Orig transcript id	gnl\|cribi\|Naga_100068g9.2428.mrna
Orig protein id	gnl\|cribi\|Naga_100068g9.2428
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:545667..548185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100068g9	gene5482	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5674	rna5674-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25004.1	cds5659	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:545667..548185+
coding sequence from alignment at CM002466.1:545667..548185+

mRNA sequence

>rna5674 ID=rna5674|Name=rna5674|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp
GGACGGTGTTCTGTTGGCAAGAAACCCAATTCCTGCGTGAAGTATAAGGG
GAATGTGTCCGTGAAGCAATCGATAACTTTGACTATTATGCTTAATCCCA
TCTTCAAGTTAGTATCCAACGACACGAGCAGCAAGCTTTCTCTATGACTT
TGCTTAAAACCTCCTCACGCCCCTCTCGTCCTCCTTGGACTCAATATTTT
TCTATGGGAGCAAAACGCAAATCTCTCGTCTTATGAAAATATTAACAATT
TTTGTTGCAAATCAATAGTCAAAAGTCAGCCATCTGTAATATGGCTCTGT
GGCATATCATCCGGGCGCACGGTCGTCAGCTTCGCCTGGGTTTTGGATCC
CGCTGGCTTTCTGACCATCGCTCAACATTTGAGAATAAAGAGGAAGCTTT
AGAGAAGCAATATATGTACGAACAGAACAAGAAAACTATGGAACAATTCA
CCGCAAAAATGGTGGCAAGGGAGAATCAGCAAGGTGTTGCGAAGCAGGAG
CTGTGTGAGATTCTGGGACACTCTATTCCTGAGGACGTCATGAAAAAGCT
ATTTGCATGGAAAGATAAGCATTCAAATCGAGATGTACATGTAAAGTGAC
TGACTTTGCGCGAGACTCCGGTTGGATATGGTCGAGCGTTTTAAACACAT
TGTCACACGTTTCGAGTGACGAGCGAAGGACAATTGTGATAACCTTGAGT
ATTTCTCGTAGGATTGGTTCAAGAAAGTGCCTTCCTTTAAAAATGACTTC
TTGGGCACAAAGACTGCTGACAAGGAATATCACGCTTGACGCTAAAAGGA
GGACTTAGACATAAGCTCTTTTATGTTTGACGAATGATAGCGGAAGCGCG
GCCACAAAATTCGATCTGTTTTTCAAATATCTAAAGGATCTAAGAGAATA
ATGCTGCACTAAGTGGTAGAGTCGTTTGTTTTTGCTTTGTATCGCGGTCA
CAATTCCTTCGAGTAAGGAATTTTGCAATATGGAGTTACGTGAAACAAAC
ACCTCAACTCGTGTACAAGCCCATGTCGATGGTATACATGGAGGAATAGC
ATATATATTGGGCAGTCTTAAAGATCATAAAGAATCATGTTGCTGATGCA
TAACTTCTTGAGTTTACGCAATGTCTAACAATGTACGCTGAGCTTCTTCT
TCCGCTGCAGTGACCTTCGAGTAGGCGGGCCTCTTTGAAATTGAATAATG
AAAAGACGAAATGTAAGCCGAGAAATTGTGGAGTAAAGAAGCATGTTTTG
A

protein sequence of rna5674

>rna5674-protein ID=rna5674-protein|Name=rna5674|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNIT
WGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAAR
DPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGG
QKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSS
VFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS

mRNA from alignment at CM002466.1:545667..548185+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5674 ID=rna5674|Name=rna5674|organism=Nannochloropsis gaditana|type=mRNA|length=2519bp|location=Sequence derived from alignment at CM002466.1:545667..548185+ (Nannochloropsis gaditana)
TAAACGTTTACGCCACGACATGACGTCTTCGTCCAACTGTCCCAGTACCT
AACGACATGGTAAGAAGAGTAAAAATCGTCCACTTAAGGATCTTGACCAA
TAATTGCATGGTGATCGCTCCTTATTTGGCACACAGGCTCTTCAGGACAA
CTTTAAGGATGAAGCCCCCTTTGTCGCGAGTGGCGTGTGTCAAGTTTCTG
CATCCTCGCAATCTATAGAGGACCTGAGGATACGAAGGGCAAGGCTTCGG
AGGGTAACTCATAGCCCATCCGCATACCCTGCGAAGATGCGGCTTGTATC
AGAGGCACATTTACACATGCCTTCTCAAATGGTTTCTCTGAGCAACTGCC
ATGTCGTGCCGTACAGTACCGAGTTTCATCGTAGCACGGTACGTTTTCAG
CTGAATGCACACTGTGTGTGAATCATTTTTTCAATTCTGGATATCAATAT
ATTGCAGTACTGAAAATTTTTCATTTATTCACTTTCGCAACGCTCTCGGC
GCCTACTTCCTTTATCACAGACATTTACTTCATCATTCACAGGCCTCTAT
CATGACTCGAGTCTCAGTAGTGCAAGTATGCACGATCAGAGGATGCGGCG
CCATGCTATCAAACAAGAAGCTCGAATTGAACGACGGCGGACTAAATGCT
TGCAAATGCAATATTTAGCTGCCAAGTACCAAACCAGGTGCGTCCCAGAC
AATCTTTTTCTCTGACAAAGTATTTTAGTGATCTGAAACAGACAGACACT
CTAATACTTTTAGGGCGCGAAATTTACGACAACGGCTTCGAGAAGACCGT
CAGAAGCAGTACACATGTCTTCTTTCAGCAGTACGGCGCATTCAAGCTGT
TTTTCGTCGGCGACAGCTCataagaaggaaaaaagcggaggaagctcgAG
CCAATCAAAAAGCTGCTCTTGTCTTGTGTGACTTCGGAAGGCGAGTGGTA
ACCATCATGGCAGCTAAGAAAGAGTTGAGCAGACGGGTAAGTACTTCAGC
CGGATAATTCTTCTCTCTTAGATAAACTTATATAgtttccttcgcctctt
ctttaaaaaaatgaATTTGGAAGAGGCATGTTCTACGGTGTGAAGCAGCA
GTCAAAGCAATCAGCACTTGGTGGAGAAAACTTTTGGCAATCCTCCATGC
AAGGCGTTTGCGGAAAATATTACTAGCAGAAAGACAAAATCGCCAGGCCC
AGTGTAAATTGAATATAGTTCTATTTTGTCAATCGCATTTTAGGGGACGG
CGGGTACGAAGATTTGTTGCATTACTCAGACGTCAAGAAATGGAGAGGGC
AATAGAAGCGGCAAAATTGGCCGCTGctcttgaagaggaaagggagcgcc
GACAGCGAAAACGAGGAGAGTTACACGGACGGCCATTCCGATAAGTTGAA
TTGAATAGAGAAATGTTTTAATTTTCTATATCCATGTAAAAGTAAAAATT
AAGGTAGCGGAACAAGCTCGCCAGTGATACTCACCGATACGCGGGAGAAT
GCGATCGGACGGCTTTCAATGTGCCTTGAAGCAAACATAGTTGCACCGTG
CCTCCAACGATTCTTGATtgacttttttttctttctgcgCTGTGCTTTAC
CGATTGCCATCGTCGAATCGGTTTGCGTCTTGATCTCATCAATTGGTTCA
TGTATCTTCAACCGAGCAACCTCCCaccatcctttttttcccctctccca
cacaGCTCTCGTACCCGCTCCAATTGCTTATCTGCTGCGTTGCCAAAGTC
ATGTGCCATGGCTGTAAATGTCTCATTGGACCCTCTATGTTGGCCAGTGA
CCTGTCATGCATGGCTGACGAGGCAAAAAAGGTGAtagcgggcggggcgg
actACTTGCACTTGGACGTGATGGATGGCCACTTCGTGCCGAACATAACC
TGGGGCCCCCCTGTCATCAAGCACTTGCGAAAACACTGTCCAGACATATT
CTTTGACTGCCATATGATGGTGAGCAACCCGGAGCAATGGGTTCAAGAGA
TCAAGGATGCTGGTGGGGACCAGTACACATTTCATTTGGAAGCCGCTCGA
GATCCTGCCGGCCTAATCGAGCAAATCAAGGCCATAGGAATGAGAGTGGG
TATGGCCCTGCGACCAGGCACACCAATCGAGGATGCGCTCCCATGGGTGG
ATTCTGTGGATGTGGTGTTGGTCATGACCGTAGAACCGGGTTTTGGGGGG
CAAAAGTTTATGGCGGACATGATGCCGAAAGTGGCGTATTTGCGGGCCAA
GTGCCCAGAGAAGGACATTGAAGTAGATGGAGGCCTCGGCCCTGCGACTG
TCGATGCCGCTGCCCGAGCAGGGGCAAACATGATAGTGGCGGGTAGTTCG
GTGTTCAACAGTGAAGTTCCTGCGAAAGTCATCGCGGCTTTACGGCGAAG
CGTAGAAAAACTTGGAAATggaaagagcgaggaggagctgactCAGCTCC
CATCCTAACAAAGCATTTcaaatggaagagggacaGCTATATAAGAAAAA
TCACAGACATACAGGACAT

Coding sequence (CDS) from alignment at CM002466.1:545667..548185+

>rna5674 ID=rna5674|Name=rna5674|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002466.1:545667..548185+ (Nannochloropsis gaditana)
ATGTGCCATGGCTGTAAATGTCTCATTGGACCCTCTATGTTGGCCAGTGA
CCTGTCATGCATGGCTGACGAGGCAAAAAAGGTGAtagcgggcggggcgg
actACTTGCACTTGGACGTGATGGATGGCCACTTCGTGCCGAACATAACC
TGGGGCCCCCCTGTCATCAAGCACTTGCGAAAACACTGTCCAGACATATT
CTTTGACTGCCATATGATGGTGAGCAACCCGGAGCAATGGGTTCAAGAGA
TCAAGGATGCTGGTGGGGACCAGTACACATTTCATTTGGAAGCCGCTCGA
GATCCTGCCGGCCTAATCGAGCAAATCAAGGCCATAGGAATGAGAGTGGG
TATGGCCCTGCGACCAGGCACACCAATCGAGGATGCGCTCCCATGGGTGG
ATTCTGTGGATGTGGTGTTGGTCATGACCGTAGAACCGGGTTTTGGGGGG
CAAAAGTTTATGGCGGACATGATGCCGAAAGTGGCGTATTTGCGGGCCAA
GTGCCCAGAGAAGGACATTGAAGTAGATGGAGGCCTCGGCCCTGCGACTG
TCGATGCCGCTGCCCGAGCAGGGGCAAACATGATAGTGGCGGGTAGTTCG
GTGTTCAACAGTGAAGTTCCTGCGAAAGTCATCGCGGCTTTACGGCGAAG
CGTAGAAAAACTTGGAAATggaaagagcgaggaggagctgactCAGCTCC
CATCCTAA

Synonyms

Publications