EWM25004.1, cds5659 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|585106639|gb|EWM25004.1| (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana]) HSP 1 Score: 483.411 bits (1243), Expect = 8.284e-173 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS 235
MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS
Sbjct: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS 235
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|1173960160|gb|OQS06317.1| (ribulose-phosphate 3-epimerase [Thraustotheca clavata]) HSP 1 Score: 358.992 bits (920), Expect = 1.663e-123 Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LRKH D FFDCHMMVS PE+WV +IKDAGGDQ+TFHLE+ +P LIEQI+A GM+VG+A++PGT +E LP+V VD+VLVMTVEPGFGGQ FMADMMPKVA+LR K P DIEVDGGLGP+T++AAA+AGANMIVAGSSVF + PA+VI +R SVE GNGK+ EELT+L
Sbjct: 1 MCHSCACQIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRKHT-DAFFDCHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIEQIRAAGMKVGVAIKPGTAVEGVLPYVSLVDMVLVMTVEPGFGGQSFMADMMPKVAFLREKFPSLDIEVDGGLGPSTIEAAAKAGANMIVAGSSVFKASDPAEVILFMRHSVEIHGNGKTTEELTRL 232
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|1173935624|gb|OQR86718.1| (ribulose-phosphate 3-epimerase [Achlya hypogyna]) HSP 1 Score: 349.362 bits (895), Expect = 9.466e-120 Identity = 167/232 (71.98%), Postives = 191/232 (82.33%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQ 232
MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LR+H FFDCHMMVS PE+WV +IKDAGGDQ+TFHLE+ +P LI QI+A GM+VG+A++PGTP E LP V VD+VLVMTVEPGFGGQ FMADMMPKV +LR K P DIEVDGGLGPAT+DAAA+AGANMIVAGSSVF + PA I +R SVE+LGNGK++ +LT+
Sbjct: 1 MCHSCVCKIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRQHT-TAFFDCHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIAQIRAAGMKVGVAIKPGTPAESVLPLVPLVDMVLVMTVEPGFGGQSFMADMMPKVTFLREKFPALDIEVDGGLGPATIDAAAKAGANMIVAGSSVFRAANPADAILLMRHSVERLGNGKADADLTR 231
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|567981623|gb|ETL32060.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|568011130|gb|ETL85308.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|570943054|gb|ETP08311.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica CJ01A1]) HSP 1 Score: 347.436 bits (890), Expect = 1.443e-118 Identity = 166/233 (71.24%), Postives = 192/233 (82.40%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMVS PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A+RPGT E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + P VI +R SVEK GNGKS+++LT+L
Sbjct: 32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIRPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|970630887|gb|KUF77692.1| (Ribulose-phosphate 3-epimerase [Phytophthora nicotianae]) HSP 1 Score: 345.895 bits (886), Expect = 1.880e-118 Identity = 165/233 (70.82%), Postives = 192/233 (82.40%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMVS PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A++PGT E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + P VI +R SVEK GNGKS+++LT+L
Sbjct: 1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 232
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|698799272|ref|XP_009832665.1| (ribulose-phosphate 3-epimerase [Aphanomyces astaci] >gi|574112062|gb|ETV77555.1| ribulose-phosphate 3-epimerase [Aphanomyces astaci]) HSP 1 Score: 345.125 bits (884), Expect = 3.814e-118 Identity = 164/226 (72.57%), Postives = 188/226 (83.19%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKS 226
MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LR+H + FFD HMMVS PE+WV +IKDAGGDQ+TFHLE+ +P LI QI+A GM+VG+AL+PGT +E LP V VD+VLVMTVEPGFGGQ FMADMMPKV++LR + P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + +PA VI LRRSVE GNGK+
Sbjct: 1 MCHSCVCKIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRQHT-NAFFDVHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIRQIRAAGMKVGVALKPGTAVESVLPLVSLVDMVLVMTVEPGFGGQSFMADMMPKVSFLRERFPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAALPADVITLLRRSVEVHGNGKA 225
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|566015516|gb|ETI38427.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica P1569] >gi|567952966|gb|ETK78629.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|568041036|gb|ETM38460.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|570319252|gb|ETO67200.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica P1976] >gi|570973840|gb|ETP36365.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica P10297]) HSP 1 Score: 346.28 bits (887), Expect = 5.251e-118 Identity = 165/233 (70.82%), Postives = 192/233 (82.40%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMVS PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A++PGT E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + P VI +R SVEK GNGKS+++LT+L
Sbjct: 32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|301118582|ref|XP_002907019.1| (ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4] >gi|262108368|gb|EEY66420.1| ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4]) HSP 1 Score: 343.584 bits (880), Expect = 1.523e-117 Identity = 164/233 (70.39%), Postives = 190/233 (81.55%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMVS PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A++PGT E A P+VD VD+VLVMTVEPGFGGQ FM DMM KV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +E VI +R SVEK GNGKS+++LT+L
Sbjct: 1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPYVDLVDMVLVMTVEPGFGGQSFMTDMMTKVKIIRAKYPALDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAEDLTAVILQMRHSVEKYGNGKSDDQLTKL 232
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|675173043|ref|XP_008895406.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica INRA-310] >gi|568104929|gb|ETN19574.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica INRA-310]) HSP 1 Score: 344.739 bits (883), Expect = 1.622e-117 Identity = 164/233 (70.39%), Postives = 191/233 (81.97%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMVS PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A++PGT E A P+V+ VD+VLVMTVEPGFGGQ FM DMMPKV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + P VI +R SVEK GNGKS+++LT+L
Sbjct: 32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMTDMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|301090345|ref|XP_002895391.1| (ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4] >gi|262099012|gb|EEY57064.1| ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4]) HSP 1 Score: 341.273 bits (874), Expect = 1.487e-116 Identity = 163/233 (69.96%), Postives = 189/233 (81.12%), Query Frame = 0
Query: 1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H FFDCHMMV PEQWV +I AGGDQ+TFHLEA +DP LI+QI+ GM+VG+A++PGT E A P+VD VD+VLVMTVEPGFGGQ FM DMM KV +RAK P DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +E VI +R SVEK GNGKS+++LT+L
Sbjct: 1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVFKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPYVDLVDMVLVMTVEPGFGGQSFMTDMMTKVKIIRAKYPALDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAEDLTAVILQMRHSVEKYGNGKSDDQLTKL 232 The following BLAST results are available for this feature:
BLAST of EWM25004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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