EWM25004.1, cds5659 (CDS) Nannochloropsis gaditana

Overview
NameEWM25004.1
Unique Namecds5659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:547417..548124 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25004.1
Productribulose-phosphate 3-epimerase
Orig transcript idgnl|cribi|Naga_100068g9.2428.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:547417..548124 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004750ribulose-phosphate 3-epimerase activity
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
GO:0006098pentose-phosphate shunt
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR013785Aldolase_TIM
IPR026019Ribul_P_3_epim
IPR000056Ribul_P_3_epim-like
Homology
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|585106639|gb|EWM25004.1| (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 483.411 bits (1243), Expect = 8.284e-173
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS 235
            MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS
Sbjct:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLPS 235          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|1173960160|gb|OQS06317.1| (ribulose-phosphate 3-epimerase [Thraustotheca clavata])

HSP 1 Score: 358.992 bits (920), Expect = 1.663e-123
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LRKH  D FFDCHMMVS PE+WV +IKDAGGDQ+TFHLE+  +P  LIEQI+A GM+VG+A++PGT +E  LP+V  VD+VLVMTVEPGFGGQ FMADMMPKVA+LR K P  DIEVDGGLGP+T++AAA+AGANMIVAGSSVF +  PA+VI  +R SVE  GNGK+ EELT+L
Sbjct:    1 MCHSCACQIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRKHT-DAFFDCHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIEQIRAAGMKVGVAIKPGTAVEGVLPYVSLVDMVLVMTVEPGFGGQSFMADMMPKVAFLREKFPSLDIEVDGGLGPSTIEAAAKAGANMIVAGSSVFKASDPAEVILFMRHSVEIHGNGKTTEELTRL 232          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|1173935624|gb|OQR86718.1| (ribulose-phosphate 3-epimerase [Achlya hypogyna])

HSP 1 Score: 349.362 bits (895), Expect = 9.466e-120
Identity = 167/232 (71.98%), Postives = 191/232 (82.33%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQ 232
            MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LR+H    FFDCHMMVS PE+WV +IKDAGGDQ+TFHLE+  +P  LI QI+A GM+VG+A++PGTP E  LP V  VD+VLVMTVEPGFGGQ FMADMMPKV +LR K P  DIEVDGGLGPAT+DAAA+AGANMIVAGSSVF +  PA  I  +R SVE+LGNGK++ +LT+
Sbjct:    1 MCHSCVCKIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRQHT-TAFFDCHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIAQIRAAGMKVGVAIKPGTPAESVLPLVPLVDMVLVMTVEPGFGGQSFMADMMPKVTFLREKFPALDIEVDGGLGPATIDAAAKAGANMIVAGSSVFRAANPADAILLMRHSVERLGNGKADADLTR 231          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|567981623|gb|ETL32060.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|568011130|gb|ETL85308.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|570943054|gb|ETP08311.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 347.436 bits (890), Expect = 1.443e-118
Identity = 166/233 (71.24%), Postives = 192/233 (82.40%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMVS PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A+RPGT  E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +  P  VI  +R SVEK GNGKS+++LT+L
Sbjct:   32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIRPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|970630887|gb|KUF77692.1| (Ribulose-phosphate 3-epimerase [Phytophthora nicotianae])

HSP 1 Score: 345.895 bits (886), Expect = 1.880e-118
Identity = 165/233 (70.82%), Postives = 192/233 (82.40%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMVS PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A++PGT  E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +  P  VI  +R SVEK GNGKS+++LT+L
Sbjct:    1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 232          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|698799272|ref|XP_009832665.1| (ribulose-phosphate 3-epimerase [Aphanomyces astaci] >gi|574112062|gb|ETV77555.1| ribulose-phosphate 3-epimerase [Aphanomyces astaci])

HSP 1 Score: 345.125 bits (884), Expect = 3.814e-118
Identity = 164/226 (72.57%), Postives = 188/226 (83.19%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKS 226
            MCH C C IGPSMLASDLSC+ DEA KV+A GADYLHLDVMDGHFVPNITWG PVIK LR+H  + FFD HMMVS PE+WV +IKDAGGDQ+TFHLE+  +P  LI QI+A GM+VG+AL+PGT +E  LP V  VD+VLVMTVEPGFGGQ FMADMMPKV++LR + P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF + +PA VI  LRRSVE  GNGK+
Sbjct:    1 MCHSCVCKIGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRQHT-NAFFDVHMMVSEPEKWVDDIKDAGGDQFTFHLESTSNPEALIRQIRAAGMKVGVALKPGTAVESVLPLVSLVDMVLVMTVEPGFGGQSFMADMMPKVSFLRERFPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAALPADVITLLRRSVEVHGNGKA 225          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|566015516|gb|ETI38427.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica P1569] >gi|567952966|gb|ETK78629.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|568041036|gb|ETM38460.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica] >gi|570319252|gb|ETO67200.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica P1976] >gi|570973840|gb|ETP36365.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica P10297])

HSP 1 Score: 346.28 bits (887), Expect = 5.251e-118
Identity = 165/233 (70.82%), Postives = 192/233 (82.40%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMVS PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A++PGT  E A P+V+ VD+VLVMTVEPGFGGQ FMADMMPKV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +  P  VI  +R SVEK GNGKS+++LT+L
Sbjct:   32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMADMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|301118582|ref|XP_002907019.1| (ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4] >gi|262108368|gb|EEY66420.1| ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4])

HSP 1 Score: 343.584 bits (880), Expect = 1.523e-117
Identity = 164/233 (70.39%), Postives = 190/233 (81.55%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMVS PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A++PGT  E A P+VD VD+VLVMTVEPGFGGQ FM DMM KV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +E    VI  +R SVEK GNGKS+++LT+L
Sbjct:    1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPYVDLVDMVLVMTVEPGFGGQSFMTDMMTKVKIIRAKYPALDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAEDLTAVILQMRHSVEKYGNGKSDDQLTKL 232          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|675173043|ref|XP_008895406.1| (ribulose-phosphate 3-epimerase [Phytophthora parasitica INRA-310] >gi|568104929|gb|ETN19574.1| ribulose-phosphate 3-epimerase [Phytophthora parasitica INRA-310])

HSP 1 Score: 344.739 bits (883), Expect = 1.622e-117
Identity = 164/233 (70.39%), Postives = 191/233 (81.97%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMVS PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A++PGT  E A P+V+ VD+VLVMTVEPGFGGQ FM DMMPKV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +  P  VI  +R SVEK GNGKS+++LT+L
Sbjct:   32 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVSKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPFVELVDMVLVMTVEPGFGGQSFMTDMMPKVEAIRAKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAADPMAVILQMRHSVEKYGNGKSDDQLTKL 263          
BLAST of EWM25004.1 vs. NCBI_GenBank
Match: gi|301090345|ref|XP_002895391.1| (ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4] >gi|262099012|gb|EEY57064.1| ribulose-phosphate 3-epimerase [Phytophthora infestans T30-4])

HSP 1 Score: 341.273 bits (874), Expect = 1.487e-116
Identity = 163/233 (69.96%), Postives = 189/233 (81.12%), Query Frame = 0
Query:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQL 233
            MCH C C IGPS+LASDLSC+ DE+ KV+A GADYLHLDVMDGHFVPNI+WGPPVIK LR H    FFDCHMMV  PEQWV +I  AGGDQ+TFHLEA +DP  LI+QI+  GM+VG+A++PGT  E A P+VD VD+VLVMTVEPGFGGQ FM DMM KV  +RAK P  DIEVDGGLGP+T+DAAA+AGANMIVAGSSVF +E    VI  +R SVEK GNGKS+++LT+L
Sbjct:    1 MCHSCTCKIGPSLLASDLSCLKDESLKVVAAGADYLHLDVMDGHFVPNISWGPPVIKSLRPHT-KAFFDCHMMVFKPEQWVPDIAAAGGDQFTFHLEATQDPLALIKQIRDAGMKVGLAIKPGTSAEAAFPYVDLVDMVLVMTVEPGFGGQSFMTDMMTKVKIIRAKYPALDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKAEDLTAVILQMRHSVEKYGNGKSDDQLTKL 232          
The following BLAST results are available for this feature:
BLAST of EWM25004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106639|gb|EWM25004.1|8.284e-173100.00ribulose-phosphate 3-epimerase [Nannochloropsis ga... [more]
gi|1173960160|gb|OQS06317.1|1.663e-12373.39ribulose-phosphate 3-epimerase [Thraustotheca clav... [more]
gi|1173935624|gb|OQR86718.1|9.466e-12071.98ribulose-phosphate 3-epimerase [Achlya hypogyna][more]
gi|567981623|gb|ETL32060.1|1.443e-11871.24ribulose-phosphate 3-epimerase [Phytophthora paras... [more]
gi|970630887|gb|KUF77692.1|1.880e-11870.82Ribulose-phosphate 3-epimerase [Phytophthora nicot... [more]
gi|698799272|ref|XP_009832665.1|3.814e-11872.57ribulose-phosphate 3-epimerase [Aphanomyces astaci... [more]
gi|566015516|gb|ETI38427.1|5.251e-11870.82ribulose-phosphate 3-epimerase [Phytophthora paras... [more]
gi|301118582|ref|XP_002907019.1|1.523e-11770.39ribulose-phosphate 3-epimerase [Phytophthora infes... [more]
gi|675173043|ref|XP_008895406.1|1.622e-11770.39ribulose-phosphate 3-epimerase [Phytophthora paras... [more]
gi|301090345|ref|XP_002895391.1|1.487e-11669.96ribulose-phosphate 3-epimerase [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5674rna5674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications