rna5671, rna5671 (mRNA) Nannochloropsis gaditana

Overview
Namerna5671
Unique Namerna5671
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length483
Alignment locationCM002466.1:537975..539273 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g6.2441.mrna
Orig protein idgnl|cribi|Naga_100068g6.2441
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:537975..539273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g6gene5479Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25017.1cds5656Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5671rna5671-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5671 ID=rna5671|Name=rna5671|organism=Nannochloropsis gaditana|type=mRNA|length=483bp
ATGCTTCAACTGACCACGGTGAAAAGGAGGAAAAAGGAAAATATTGAGCG
GAGTAGAGGAGGCCCTTGTGGTTTCCCGCGACGTGCAGAGGGGAGGAAGG
GTCGATATGGCAAGGTGACGCGAAAGACAAAGTCTGAGATCCTTGCAAAT
TACCACATCAAAAATACAAAAGACATCCGCGAGGCATTAAGGGATGCGCA
CGTCGAGGATGAGACAATATGCACTGCACGTGCGCATAATCAAGAGGCGA
AAAGAAATAAGAGAGACGTTGAGATCAATGGGGCAACTGAGAGGGAGGCA
TGTGCAGGGATGGGATTGGCACGCAGAAGACACAAGGGGATACTAAGCGA
GTGCGGAAACGTAAAACCTGTCTTACGCGCATGGTCCCGAAAATGTGACT
GCGGTAGGCTGAAAAAGGAAAAACCTGCCTTGTATGTATCGGACAGTCTC
AAGAAGGAAGAAGATGGAAGGAAACAAATATAA
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protein sequence of rna5671

>rna5671-protein ID=rna5671-protein|Name=rna5671|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MGWSRYDVWQCYLLHHAHPSPRCYAHTCQIYIYIKEQGKVILRLTEVARY
INLYLVLRSYDTIFCKPYRGLYAITSSSRRLFNMQIFKKTSFLLLTPALL
GLSHAFEPTVDMHVDDFDAIRGIAEYITSSAGLSSAKGALDHGLVSSDFE
LETVSPGGFMGHGRRLGATDEECGAFLAASLAPHLWECFDMAQTVLNLVK
QENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASILKQSCNE
CASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNG
YKIALEYLCTTSPTNKNYCFADIFGVLNALDASTFCSKMKPIGCCTGTVF
NFVTECATSNDTLSTSAGSISLTDLQQFCPEIDFKTPCANAPPLEPGACL
DTYYLSSAWSMRASVVLTLALASLATVATFVF
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mRNA from alignment at CM002466.1:537975..539273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5671 ID=rna5671|Name=rna5671|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp|location=Sequence derived from alignment at CM002466.1:537975..539273- (Nannochloropsis gaditana)
ATGGGTTGGAGTCGATACGATGTCTGGCAATGTTATCTCCTACACCATGC
GCATCCAAGCCCGCGTTGTTACGCTCATACCTGCCAAATATATATTTACA
TAAAAGAACAGGGAAAGGTCATACTACGCCTTACCGAAGTTGCACGCTAC
ATCAACCTTTATCTTGTGTTGCGCTCGTACGACACTATCTTCTGTAAACC
GTACAGAGGCCTTTACGCGATCACATCTAGCTCAAGACGTCTGTTTAATA
TGCAGATCTTCAAGAAGACCTCTTTTCTGCTTCTCACACCAGCACTACTC
GGCCTGAGCCATGCCTTTGAGCCCACCGTGGACATGCACGTGGATGATTT
TGATGCAATCCGCGGCATTGCTGAGTACATCACAAGTAGCGCAGGCCTCT
CTAGTGCCAAGGGCGCACTAGATCATGGACTCGTGAGCAGTGATTTTGAG
CTAGAAACAGTTTCTCCCGGAGGATTCATGGGGCATGGTCGACGCCTGGG
TGCGACGGATGAGGAATGCGGAGCTTTCTTGGCTGCTTCCCTTGCTCCTC
ACTTGTGGGAGTGCTTTGACATGGCTCAAACTGTCTTAAACTTGGTGAAA
CAGGAGAATTGCAAGACTAGCTATGATTTCTCTCAGGCTAACATGCACCG
CATTTGCACCAATCAGTGTCACGATGTCTTGCACAAGACTCTTTCTACCA
TGTCCTCCGCGGGATGCTCCGCTTCCATCTTGAAACAGTCGTGCAATGAG
TGTGCCTCCGGGGAGAAGTGTGTTGGTACGAAATGCCGCACAGTCTGCTC
GCCTTCTTTGCCTTGCCCGTGCTCCTACGCGTGTGAGAGCGGGGCATGCA
TCCCTCCTAAGAACTCGGAGGTGACAGTGAATGACATGGGTGTCAACGGA
TACAAGATTGCCCTGGAGTACCTCTGCACCACGTCTCCTACCAACAAAAA
TTACTGCTTCGCCGACATTTTTGGCGTCCTGAATGCGTTGGATGCATCCA
CTTTCTGCTCTAAGATGAAGCCCATCGGGTGCTGTACCGGCACGGTCTTC
AACTTCGTCACTGAATGCGCGACCAGCAATGACACTCTTTCCACGAGCGC
CGGCTCCATCTCTTTGACGGACCTCCAACAATTTTGTCCCGAGATTGACT
TCAAGACGCCCTGTGCTAACGCTCCCCCCCTTGAACCGGGCGCTTGTCTG
GATACATATTATCTTTCTAGTGCGTGGAGCATGCGGGCTTCGGTAGTGCT
GACTCTGGCCCTAGCGTCCTTGGCGACGGTAGCGACTTTTGTCTTCTAA
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Coding sequence (CDS) from alignment at CM002466.1:537975..539273-

>rna5671 ID=rna5671|Name=rna5671|organism=Nannochloropsis gaditana|type=CDS|length=1299bp|location=Sequence derived from alignment at CM002466.1:537975..539273- (Nannochloropsis gaditana)
ATGGGTTGGAGTCGATACGATGTCTGGCAATGTTATCTCCTACACCATGC
GCATCCAAGCCCGCGTTGTTACGCTCATACCTGCCAAATATATATTTACA
TAAAAGAACAGGGAAAGGTCATACTACGCCTTACCGAAGTTGCACGCTAC
ATCAACCTTTATCTTGTGTTGCGCTCGTACGACACTATCTTCTGTAAACC
GTACAGAGGCCTTTACGCGATCACATCTAGCTCAAGACGTCTGTTTAATA
TGCAGATCTTCAAGAAGACCTCTTTTCTGCTTCTCACACCAGCACTACTC
GGCCTGAGCCATGCCTTTGAGCCCACCGTGGACATGCACGTGGATGATTT
TGATGCAATCCGCGGCATTGCTGAGTACATCACAAGTAGCGCAGGCCTCT
CTAGTGCCAAGGGCGCACTAGATCATGGACTCGTGAGCAGTGATTTTGAG
CTAGAAACAGTTTCTCCCGGAGGATTCATGGGGCATGGTCGACGCCTGGG
TGCGACGGATGAGGAATGCGGAGCTTTCTTGGCTGCTTCCCTTGCTCCTC
ACTTGTGGGAGTGCTTTGACATGGCTCAAACTGTCTTAAACTTGGTGAAA
CAGGAGAATTGCAAGACTAGCTATGATTTCTCTCAGGCTAACATGCACCG
CATTTGCACCAATCAGTGTCACGATGTCTTGCACAAGACTCTTTCTACCA
TGTCCTCCGCGGGATGCTCCGCTTCCATCTTGAAACAGTCGTGCAATGAG
TGTGCCTCCGGGGAGAAGTGTGTTGGTACGAAATGCCGCACAGTCTGCTC
GCCTTCTTTGCCTTGCCCGTGCTCCTACGCGTGTGAGAGCGGGGCATGCA
TCCCTCCTAAGAACTCGGAGGTGACAGTGAATGACATGGGTGTCAACGGA
TACAAGATTGCCCTGGAGTACCTCTGCACCACGTCTCCTACCAACAAAAA
TTACTGCTTCGCCGACATTTTTGGCGTCCTGAATGCGTTGGATGCATCCA
CTTTCTGCTCTAAGATGAAGCCCATCGGGTGCTGTACCGGCACGGTCTTC
AACTTCGTCACTGAATGCGCGACCAGCAATGACACTCTTTCCACGAGCGC
CGGCTCCATCTCTTTGACGGACCTCCAACAATTTTGTCCCGAGATTGACT
TCAAGACGCCCTGTGCTAACGCTCCCCCCCTTGAACCGGGCGCTTGTCTG
GATACATATTATCTTTCTAGTGCGTGGAGCATGCGGGCTTCGGTAGTGCT
GACTCTGGCCCTAGCGTCCTTGGCGACGGTAGCGACTTTTGTCTTCTAA
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Synonyms
Publications