rna5668, rna5668 (mRNA) Nannochloropsis gaditana

Overview
Namerna5668
Unique Namerna5668
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2249
Alignment locationCM002466.1:533090..534481 -

Link to JBrowse

Properties
Property NameValue
Productputative cytosolic iron-sulfur protein assembly protein ciao1
Orig transcript idgnl|cribi|Naga_100068g3.2440.mrna
Orig protein idgnl|cribi|Naga_100068g3.2440
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:533090..534481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g3gene5476Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25016.1cds5653Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5668rna5668-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5668 ID=rna5668|Name=rna5668|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp
GACACCGGACCAACCCGCCAGCCATATTGCTTTGGTATCTCAAGCGTGCA
TTTTCCATCAATGAACCACAAACAGGGCACGCTGCAGCCTTTTCCTTGGC
GTCAAGCAGCCCGGAGGCAGGACAACGTCTTAGCCATGGCCGTCATATGC
TGTCTCGATGCTACCGCTTTGAATTGCAACGCCAGGCGCCCGCAACCGAC
GCCGCACCCTCACTGAGACACACTGACAACACACAAACAGAAAAAAGTGG
TGTTGACGAATGGAAAAATGCGCGCGTGCCATCTAAAATTCTGCGCCTTC
TTCGTCGCTACCTTGTTGCGCTTCCCCTCCGGCTTTCATGTGCCCACTCC
GCAATTAGCAACCTTCAAGTCGATGCGCAACCAATATCATGGGAGCAACA
GCCCAATAATTTTCGTAACCAAGGATAATGACTGCAGTATCAATAGCCAG
AGCGATCCGGAGTTGGCTTTGTCGGAAGTTGATTCCTTGCAAAGGTGCTT
GACTCCAGCGGAAATGGAGGACGCCAAAGATGCCAGCGACGAATGGAGGA
GAGCAGAGCTAGCCAAAAGTCCAAAAGAGGCGGTTGAGAGGAAGTCCGAC
GATAAGCTTGTCTCCGAGAACAGAGGGAATTCACGCGGACTGAGTGGCAA
GGAGACGGCGTGGGATCAGTTTATTGAAATCCTCGAACCGACCTCCGCTC
CTACTTCGTCCGCCTCCACGCCCTCCGCCAAGACTCCAGCCGCCACCACA
CGGTACTACATGAAGACGCCCGTGCCGTACTACTTCCTTCGCGACGAGCT
GGGTGTCAGCGAAAGCAATATGCTGCGTATCTCTCTCGACCACGGGCAAG
TCCTCGCTTTGAGCGTGGAAAGGAACCTTCGACCCAAAGTAGCCTGGCTC
CGGACTACGCTGCGTCTTACGCAGCCGGAAGCAGCCGCCTTGGTAGGGAG
TAGTCCTGGCCTGCTCTTGCTCAGCATCGAGGACAATCTGGCCCCCAAAC
TGTCATGGCTACAAGAGGACCTGGGCCTCGCCTTTCGAGACCGGCGCAAC
TTGATCGTGCGATGCCCGCAAATTTTGACCACCAGCACGGGGAGCTTGCT
CATGAAGCTCGCCTTCTTCCAGGATGACCTGGGCATGTCGCAGGCGGACG
TCCAGAAGGCCTTGCGCCTTATGCCCGCCCTCCTCATGCTCAGCCTGGAC
ACTCTGATGGACAAGGTCGAGTTCCTGATCGCGGCCTTCTCCATCGAAAT
CACCGACGTGGGTTCTCTCCTTGTCCGTGCCCCTGCCCTCTTTTTCCAGT
CCATTGAAGATGGACTCAAGCCTAAGGCGCGCTTCCTCCGCCGAGACCTC
GGCCTCGACCCCCCGGACATGGCGAGCCTCCTCCGCCGCATGCCCCGGGC
CCTGAACTACAACGTGGTCCGCCGAGGCCGACCTTTTCTGCAGTACCTGA
CAGGGCAGCCGCTGAATCTTAGTAAGGAAGAGGTGGCCCGCATGGTCCTG
CGGAGCCCCTCCCTCTTGTCCACCGACGTGGGCAGCCCGCGCTTCCTCCA
CCTGATGGACGCACTCCAAGGTGCCACAGGCCTCCCCCCCGGCCCCGCCT
TCGCCTCGCTCCTTCAACGCTTCCCCATGGTCCTGTCTTTCACAGCCGCC
CGCCTCCAGGCCAGCCTGGACGTGCTGGTCCGAGACCTGGGCTGCGACGC
CGGAGACGTCGCCCTCGTCCTCCAGAAGCACCCGCAGCTCGTAGGCTACC
GGCCGGAGGCCGTCCGCCTCAAGCTCTCCCTGCTCCGGGACGTATACGGA
CTCGAAGACCTGGGTGCGGCCAAGCCTGCCGTCCTCAAGGCGCCGGCCTT
AGTCTCCTACAGCCTGGACACCCGGCTCCGGCCCCGCTTGGAAATGGCGG
CGGCGGCGGGGGTGCCGCTTGAGCGGGCGGTTACCTGGCTGCCCTTGACC
GAGGCGAAGTTCGAGGAGAGGGTGGGCAGAAGCAGCACCCAAGCCATCTC
TTTGACCGATACGCCGCTCTTGCGTCAACGGCCCAACGCCCGTCTGCGCA
AAATCCTCCGGACACCGAAGGCGGTCAAGGGGGCTCTCCTTCCCTGAAGC
AGTGTGAGCGCGTGCCAGTGGAAGACACAGTAGCGGGATGGAGAACAAGA
GGGAGGAAAGGATGGTGTGATCCGGTCTTTTCAAAATATGGTGAACCCTT
TTATCCAAATAAATCATGTACAGCACGAAAAGTAAATAGCCATAAAACA
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protein sequence of rna5668

>rna5668-protein ID=rna5668-protein|Name=rna5668|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MSLKRLSVLTGHTDRVWHVSWSPCGRYLASCGGDRAIRVWGAPTLSSGPR
TDQDGDKDDRNEEEAGQEEGGGTWRLLATLGDGQTRTVRCCEWSPCGNML
AAVSFDSTCVIWELQPSRAQAGREMEWELAASVEGHEHEAKCVAWNRGGT
LLATCSRDKSVWIWECLQDNDFECLSVLHGHDQDVKFVRFHPREDVLFSA
SYDDTLKVWEEEEDDWACVSTLKGHTSTVWGLSIGSRDDGMVSCSDDGTL
IVWKAAGGAGRYDKWRQLTRLEAPGKATVYSVDWSRESGAIASGGADDAI
RIYVEDVEDPQGWALDTPSFVCEADVPGAHDADVNCVRWNPVRPDLLASA
GDDQAVRIWSFRRRGE
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mRNA from alignment at CM002466.1:533090..534481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5668 ID=rna5668|Name=rna5668|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp|location=Sequence derived from alignment at CM002466.1:533090..534481- (Nannochloropsis gaditana)
ACCTGGACTGTTGACTGAACAAATGGGGGTCCAGCCGATTGTAGTGAATC
GACTTGATATGCATGCATGGCTTCAGATCAGCTCAAAATGAGAGTCTGAG
TGACATGGGGCATCGAAGCTGACAAACGATTCAATTTTACTTCTTCCTTT
TTCACAGTGCTTCTCAGCCCGTTGCCCTTAAGGCACTCCCCTGCCCTTTC
ACGATAGGTCCTATTTCGGATCCAGGCACTTGGCAACAGCAAGACTGGTC
GCAATGTCACTCAAGCGACTCTCTGTGCTGACAGGACACACAGACAGAGT
GTGGCATGTATCCTGGAGCCCGTGTGGCAGATACCTCGCCTCTTGCGGGG
GCGACAGGGCTATACGGGTCTGGGGTGCGCCGACCCTGAGCTCTGGACCC
CGCACAGACCAAGACGGCGACAAAGACGACAGGAATGAGGAAGAGGCAGG
CCAAGAAGAGGGGGGCGGCACTTGGCGTTTGTTGGCTACATTAGGGGATG
GACAGACTCGGACGGTACGGTGCTGTGAATGGTCCCCTTGCGGAAACATG
CTAGCGGCCGTAAGCTTCGACTCCACATGCGTGATATGGGAGCTGCAGCC
GTCCAGGGCGCAAGCAGGAAGGGAAATGGAATGGGAGCTGGCGGCCTCCG
TGGAAGGGCACGAGCACGAAGCCAAGTGCGTGGCCTGGAATCGGGGAGGG
ACCTTGCTGGCGACTTGCTCCCGGGACAAGAGCGTGTGGATCTGGGAGTG
CTTACAGGACAACGACTTCGAATGCCTAAGCGTGCTTCACGGACACGATC
AAGACGTGAAGTTCGTCCGCTTCCACCCCCGTGAAGACGTCTTGTTCAGC
GCCAGCTACGACGACACGCTCAAGGTCTGGGAGGAGGAGGAGGACGACTG
GGCCTGTGTGAGCACGCTGAAGGGGCACACCTCAACCGTCTGGGGCCTGT
CCATCGGGAGTCGGGACGACGGTATGGTGTCCTGCAGCGACGACGGCACG
CTCATCGTGTGGAAAGCCGCCGGCGGGGCGGGGCGCTACGACAAATGGCG
ACAGCTGACGCGGTTGGAGGCCCCCGGCAAGGCCACCGTCTACAGCGTCG
ACTGGTCCAGGGAGAGCGGGGCCATCGCCTCGGGGGGGGCAGACGACGCG
ATTCGCATTTACGTGGAGGACGTGGAGGACCCGCAAGGCTGGGCCTTGGA
CACCCCTAGCTTTGTCTGCGAGGCCGACGTGCCTGGAGCCCACGACGCGG
ACGTGAACTGCGTGAGATGGAACCCGGTGCGACCGGATTTACTGGCCTCG
GCCGGGGATGATCAGGCCGTGCGGATTTGGAGCTTTCGGCGTCGGGGAGA
ATAACACCAGACCATGAAGAAATGTGTGCTAAATGTTTTATG
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Coding sequence (CDS) from alignment at CM002466.1:533090..534481-

>rna5668 ID=rna5668|Name=rna5668|organism=Nannochloropsis gaditana|type=CDS|length=1101bp|location=Sequence derived from alignment at CM002466.1:533090..534481- (Nannochloropsis gaditana)
ATGTCACTCAAGCGACTCTCTGTGCTGACAGGACACACAGACAGAGTGTG
GCATGTATCCTGGAGCCCGTGTGGCAGATACCTCGCCTCTTGCGGGGGCG
ACAGGGCTATACGGGTCTGGGGTGCGCCGACCCTGAGCTCTGGACCCCGC
ACAGACCAAGACGGCGACAAAGACGACAGGAATGAGGAAGAGGCAGGCCA
AGAAGAGGGGGGCGGCACTTGGCGTTTGTTGGCTACATTAGGGGATGGAC
AGACTCGGACGGTACGGTGCTGTGAATGGTCCCCTTGCGGAAACATGCTA
GCGGCCGTAAGCTTCGACTCCACATGCGTGATATGGGAGCTGCAGCCGTC
CAGGGCGCAAGCAGGAAGGGAAATGGAATGGGAGCTGGCGGCCTCCGTGG
AAGGGCACGAGCACGAAGCCAAGTGCGTGGCCTGGAATCGGGGAGGGACC
TTGCTGGCGACTTGCTCCCGGGACAAGAGCGTGTGGATCTGGGAGTGCTT
ACAGGACAACGACTTCGAATGCCTAAGCGTGCTTCACGGACACGATCAAG
ACGTGAAGTTCGTCCGCTTCCACCCCCGTGAAGACGTCTTGTTCAGCGCC
AGCTACGACGACACGCTCAAGGTCTGGGAGGAGGAGGAGGACGACTGGGC
CTGTGTGAGCACGCTGAAGGGGCACACCTCAACCGTCTGGGGCCTGTCCA
TCGGGAGTCGGGACGACGGTATGGTGTCCTGCAGCGACGACGGCACGCTC
ATCGTGTGGAAAGCCGCCGGCGGGGCGGGGCGCTACGACAAATGGCGACA
GCTGACGCGGTTGGAGGCCCCCGGCAAGGCCACCGTCTACAGCGTCGACT
GGTCCAGGGAGAGCGGGGCCATCGCCTCGGGGGGGGCAGACGACGCGATT
CGCATTTACGTGGAGGACGTGGAGGACCCGCAAGGCTGGGCCTTGGACAC
CCCTAGCTTTGTCTGCGAGGCCGACGTGCCTGGAGCCCACGACGCGGACG
TGAACTGCGTGAGATGGAACCCGGTGCGACCGGATTTACTGGCCTCGGCC
GGGGATGATCAGGCCGTGCGGATTTGGAGCTTTCGGCGTCGGGGAGAATA
A
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Synonyms
Publications