rna5660, rna5660 (mRNA) Nannochloropsis gaditana

Overview
Namerna5660
Unique Namerna5660
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002466.1:516086..516772 -

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Properties
Property NameValue
ProductProtein of unknown function DUF2905
Orig transcript idgnl|cribi|Naga_100049g8.2099.mrna
Orig protein idgnl|cribi|Naga_100049g8.2099
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:516086..516772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g8gene5468Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25040.1cds5645Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5660rna5660-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5660 ID=rna5660|Name=rna5660|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
ATGTGGGGCCAGGAAACCTGGAGGCCGGCGGACGGAGAGGAAGGCGAGAT
GGAGGACCGGAGGGAGGAGCGGTTGCCCGAGGGGTTTGCGGAGCTGATAT
CTTTGGTAGAGAAAGCCTCTGTGGATGGGGTATCTTTCCAGGACCTTTGC
CGCGACATGGCGTCGATACGAGCTGCGCTCCAGGAAGGGGTTACGGGCTT
GAATCACGAGGGCAAGCCAGACGATGGGATCGGCGAAAACGTCGTCCGAA
GTTGCCTGGACGAGGGCATCCGGCGCGGGCATGTGCTGCGCGTGCCTTCC
TTTTTTGGGCCGCGATTTGTCAGCCGGACACAGGCCACGCCCTGGATGAT
GGTCGCGGCCCCCGGGTCTGCCACAGATGGGACTGTGGAGGACGCCGACA
TGTCTCCGGGTTTGGACGCTGTCTCCGCCTCTGGAACGGCTTCTATTCCT
GACCACTCTTCGAAGCGTCGCCAGAAGGAAAGCTTCCCTGCCACCCGACT
CGCTCTGCCTTGGTTGACGATTCCCGACGGTCAGCTGCACGTGTTTCTCC
TCCTCCGGGCCCTCCGATCTCTGATTGCCGCGATCCACACCCACCCCGGC
ATGTCCTGGACCGCGGTCCGCTCCGACTATCTGCCCATGTTCTCCTTCTC
GGAGGTCTTGCTGCTGCTGCGCGCGTGCGTGGCGGCACGGGTGCTGGAGT
TGAAACGTGCAGCTTGGAAGCGGCTATCCGCGCGGCAGGGCCCAAATCTG
CAGTTTCATCGGACGATTATGCGCAGGAAGACAAGAACAGAAATATTGGG
TTGGAAGGGATGTAGGCACATACGCAAGCGGGCGAAATTTGTGCATCAAG
TTGTACATATGCGCGCAGGTAGAGAAGACGCCAGTGTTTTTGATAAAAGC
ATCTCTGTATCGAAGGTATCGAGAACCATGTAA
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protein sequence of rna5660

>rna5660-protein ID=rna5660-protein|Name=rna5660|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MRRRQVHGDGVTTDNASSTPASAPTTYEGTWPAPASETSPPAATAAVNEE
EALRAKALGVDALRRGDYDRAARFLGISSRLLPENADIRGLLNSALAGQA
RTDTRRASAHRAAAATAPPWSPQHVSGRFMNGLDAVLDKVWASLPSAGQN
LITRYTHPSMRKPLAYVSILIITAATYRFVLRGPPLVLGHLPGDIYYNSG
NVVVSAPLFSCFLASMAFSQVARLFQRR
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mRNA from alignment at CM002466.1:516086..516772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5660 ID=rna5660|Name=rna5660|organism=Nannochloropsis gaditana|type=mRNA|length=687bp|location=Sequence derived from alignment at CM002466.1:516086..516772- (Nannochloropsis gaditana)
ATGAGACGCCGCCAGGTGCACGGGGATGGGGTCACCACGGACAACGCCTC
ATCAACTCCAGCATCAGCCCCTACCACATACGAAGGAACATGGCCAGCCC
CCGCATCAGAAACATCCCCCCCCGCAGCAACTGCTGCTGTGAACGAGGAA
GAGGCGCTACGGGCAAAGGCATTGGGAGTGGACGCCTTGCGACGGGGTGA
TTACGACCGCGCGGCTCGGTTTCTGGGGATCAGCAGTCGCTTACTTCCAG
AAAATGCGGACATTAGAGGGCTTCTCAACTCCGCTTTGGCAGGCCAAGCG
CGAACGGACACTCGACGAGCTTCCGCACACCGTGCTGCGGCGGCCACAGC
CCCACCATGGTCGCCACAACACGTTTCGGGCCGATTCATGAACGGTTTGG
ACGCGGTGCTAGATAAAGTTTGGGCGTCTTTGCCCTCGGCGGGTCAAAAT
CTCATCACACGCTACACCCACCCGTCTATGCGCAAACCTTTGGCATACGT
ATCGATCCTGATAATAACTGCAGCCACCTACCGCTTTGTCTTGCGCGGTC
CACCACTCGTCTTGGGCCATTTGCCGGGCGACATATACTACAATAGCGGA
AATGTCGTGGTCTCCGCCCCGCTTTTCTCCTGCTTCTTGGCCTCCATGGC
CTTTAGCCAAGTAGCTCGTCTCTTCCAGCGCAGGTGA
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Coding sequence (CDS) from alignment at CM002466.1:516086..516772-

>rna5660 ID=rna5660|Name=rna5660|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at CM002466.1:516086..516772- (Nannochloropsis gaditana)
ATGAGACGCCGCCAGGTGCACGGGGATGGGGTCACCACGGACAACGCCTC
ATCAACTCCAGCATCAGCCCCTACCACATACGAAGGAACATGGCCAGCCC
CCGCATCAGAAACATCCCCCCCCGCAGCAACTGCTGCTGTGAACGAGGAA
GAGGCGCTACGGGCAAAGGCATTGGGAGTGGACGCCTTGCGACGGGGTGA
TTACGACCGCGCGGCTCGGTTTCTGGGGATCAGCAGTCGCTTACTTCCAG
AAAATGCGGACATTAGAGGGCTTCTCAACTCCGCTTTGGCAGGCCAAGCG
CGAACGGACACTCGACGAGCTTCCGCACACCGTGCTGCGGCGGCCACAGC
CCCACCATGGTCGCCACAACACGTTTCGGGCCGATTCATGAACGGTTTGG
ACGCGGTGCTAGATAAAGTTTGGGCGTCTTTGCCCTCGGCGGGTCAAAAT
CTCATCACACGCTACACCCACCCGTCTATGCGCAAACCTTTGGCATACGT
ATCGATCCTGATAATAACTGCAGCCACCTACCGCTTTGTCTTGCGCGGTC
CACCACTCGTCTTGGGCCATTTGCCGGGCGACATATACTACAATAGCGGA
AATGTCGTGGTCTCCGCCCCGCTTTTCTCCTGCTTCTTGGCCTCCATGGC
CTTTAGCCAAGTAGCTCGTCTCTTCCAGCGCAGGTGA
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Synonyms
Publications