rna5658, rna5658 (mRNA) Nannochloropsis gaditana

Overview
Namerna5658
Unique Namerna5658
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1980
Alignment locationCM002466.1:508642..509811 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g10.2085.mrna
Orig protein idgnl|cribi|Naga_100049g10.2085
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:508642..509811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g10gene5466Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5658rna5658-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25026.1cds5643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5658 ID=rna5658|Name=rna5658|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp
ATGCAAGCGCACCGCTGGCATACAGAGGTCATGGTCGGGGTATGTGAGGT
CACACTTTTGGCATCAATGGCGCGTGACATACTCCTCTTCATGCTTTTTC
TCGGACAGGCGGGCCTACGGAATGATGAGAAGGATATTATTCTCTGTAGT
AGGGCGGAGCGTGCTTCTGCTCGGCTGCTTCCAGATCCCCTGCACAGCCT
GGGCGTACATCAATCCCGGGGGCTGTCTTGGCTCCTGGAGTCCGTCATCT
TCGTTATCAAGTATGACTGGATCACTTCGAGCTGGCTCGGGCAGAGCCTT
CAGCGCCGGACTTCGCATGGCGATGAGCAACGACGGGGGCCTGCCCCTTG
GCGAAGAGCCGGAAGGGACTCGTGTGGAAGAGGCGCTGCGCGTGACGACC
CGTCAAATCAAGGCCTTGCAACGCTTGGTGGATAGCTTCCAAGACGTACC
GCCTGCAGATCAGCCACCCGTGTTTCCCCCGGCGGAGGTGCGGTTGCCCG
TGGCGACCCGGGAGAGCGTGGAGGGCGACAAAGCGCAGGTCCTCGAGTTG
AACGCCAAGTACTACGACGATCTGAACGGCCGGGATGTGAAGAGCATTTT
GAGCCTATGGAAGGAGGATGGCGCGGTGCAGATGTACGCGAACGAGGACC
GCGTGATCCGGGGGCTGGAGGAGATCGACAAGCACATGGACTCTCGTTTC
AAACAGCCGTGGGCGACGAACAAACATAAAGAGCGCATGGACGTGACGAA
GGAAGACGAGCGGGTCTTCCTCCGGGGCATCAACGCCTTGGTAACCAATA
AGGAGATGTGGGTCAACCCCATCAGCAAGGATAAGCTGATCATGTTCTCG
ACCAAGATCTGGCAGAAGAGCAACGGGGAGTGGAGGCTGGTGCACGTGCA
CTCGGGAGACGGGAGTCAGGTGGAAGTCCACCCGAACGGACAGATGAAAC
TGTCCGAAGGCAGCCGGGGCATGGGCCAGCAGCAACTCTTTCCCTCTTCC
AGCTCGGGTGTTACAGGGGGACGGCTGGAGGCGGGGCAGTCGCAACTGGG
GAGTGTCTTGGGGGGCCTTTTAGGGGGGGGGAGCGGCGGTCTGGGCGGCA
TCGTGCCGGGGGAGTCGGGGTTCACAGCCGACGGGCGGGAATACCGGACC
ATCATGACGCCGGAGGGCTACCGCATCATCGTGGGATCGGGTCAAGCGCA
GGGTGGGCTGTTAGGGGCAGGGAGTGGTCAAGGTCGCTCCGGACAGGAGA
CGAAGGAGGCTCTGCTGAAAGCGCTCATCCAGGACCTGTCGAAGAACGGG
AAGCAGGAGGTCATCCCCTTGCAGTTGGGGGCTCGGGGAGGGAGGGGCGG
CGGGGGGGGGGAACTCTTTTCAGGGTCTTTGGACGGCGGGCGAGGCCGAC
GGGGTGGCGGAGACGGGGCAAATGACGGTCTGGAGGACCTGGGTCGGAAG
ACGGTGGATGCGGTCCGACAGCTCTGCCACGAAGGGCGTCTCACGGTAAC
GCAGAAGCAGAAACTGATCTTCTCGGTGATCCGATCAACCAAGCAAGAGG
AGGTGTCGCAGGTAGAGATGGCGTACGATCTATTGGTGGAGAACGCGCTG
GCGGGGGAAGACAGCGCATTGGAAGAGTTTGCGGATCAGTGTGTATTGCT
CTGCGCGGCGGGGGGGGCGGCGAGTAGCTTGGTGTATGACGAGGCAGGCC
CGGAGGAGGGAGAGGATGGTATCGACGAGTAAGTGTTTGGAAATAAGAGG
CTGGGGTGAAGGGGGATGTATTGCAAAATTGCGTGTCCGGTAAAATTGTG
TGGTAGTGTAGACATGCGTTTAATGACTCGGAGCTTGCTGTATGTCTGTA
GCAGGGTCAAAATGCGATAAGTAGGAGGATGCGGTGGCTTTCTAAAAGTC
AAGGGAGTGTACAGGATAACCAAGGGCAACAAGATCAAAGACGTTTGAGC
ACTTGCATGGTTTTGAAAGCATCCAGTTGA
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protein sequence of rna5658

>rna5658-protein ID=rna5658-protein|Name=rna5658|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MPEQSASAGGRASRAPPQVVVKAALDHVARRGREGCTVKEIWDECEVGCD
SALKAFLWRALRRQRKYVFCRKTAVARPGSQRGAIKGEKNCKAENWAHAP
LNAEELDSLSLDAWDSVMVIASEDHRLRALGALHASDLPEETHGTEILEI
LAAAGS
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mRNA from alignment at CM002466.1:508642..509811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5658 ID=rna5658|Name=rna5658|organism=Nannochloropsis gaditana|type=mRNA|length=1170bp|location=Sequence derived from alignment at CM002466.1:508642..509811+ (Nannochloropsis gaditana)
ATGCCAGAGCAGTCCGCCtcggcggggggcagggctAGCCGGGCTCCACC
CCAAGTTGTTGTCAAAGCAGCCCTTGACCATGTTGCGCGACGAGGTAGGC
CGGATGGGGAAGGATTAAAAAATCGCTCTCCTATGCTTCAATATGCTCCC
CCCGTGCCGCAAAACGATGATGGACTTGAAAGTGTGAAGACACTTTTGAA
GGGAACAAAGGGGCCATGTGCACGTGTTTCTTGTGAAACATGGAGATGCC
TACACAGTGGACACCTCATCGACAAAGAGGCTGCTGCCTCGCCCCCTCAC
ATggactcttcctcctccaccggctctTATCTCCGCGCAAAATGTTTcac
aggcagggaagggtgcACGGTTAAGGAGATATGGGATGAATGCGAGGTGG
GCTGCGATTCTGCTCTGAAGGCATTCTTGTGGCGCGCTCTCCGCCGGCAA
CGCAAGTATGTGTTCTGCAGGAAGACGGCAGtggcgaggccggggagcCA
AAGAGGAGCGatcaagggggaaaagaattGCAAAGCGGAAAATTGGGCGG
TATGACGGGACAAAGtcgggaaggaaatgcgTGATCATGCCTGTACGACC
ACAGTAGATTCGACAGGAGGATAGCCAGCCCTCTGGCCACCGGCGATTGA
CCCTGTCCATTCCCTACCGTATGCACTCGCAGCACGCGCCTCTAAACGCA
GAGGAGTTGGACTCCCTGTCTCTGGATGCGTGGGACAGCGTCATGGTTAT
TGGTACGTGCGTGTGGGCGCCTGCAaggctttccccttccctccccctct
gctctccccctggcccctgattgattcctccccctcggcacCACGACAGC
TTCCGAAGACCACCGTCTTCGCGCCTTGGGCGCCTTGCACGCCTCGGACC
TGCCCGAAGAGACCCACGGGACGGAGATCTTGGAGATCCTGGCCGCGTCA
AAGGCGAGGGGACTGACCGGCGCGGAGGTGGACGCCGAGGCCAAAGGCCG
GGGACTCAAGGGCGCGACTCCTAGCTTCCTCTTGGACCGCCTGGTCGGAC
AAGGGCATGTGAAAAAAACTGCCCGGCTGGTGCCCAACCCGCCGGGGAAG
CCCCCTGGAAACAAGCGCGTCCTCTTTTCACGTCTGTCGCGCGACCACTA
CCCGGAGCGCGGGCAGCTGA
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Coding sequence (CDS) from alignment at CM002466.1:508642..509811+

>rna5658 ID=rna5658|Name=rna5658|organism=Nannochloropsis gaditana|type=CDS|length=2355bp|location=Sequence derived from alignment at CM002466.1:508642..509811+ (Nannochloropsis gaditana)
ATGCCAGAGCAGTCCGCCtcggcggggggcagggctAGCCGGGCTCCACC
CCAAGTTGTTGTCAAAGCAGCCCTTGACCATGTTGCGCGACGAGgcaggg
aagggtgcACGGTTAAGGAGATATGGGATGAATGCGAGGTGGGCTGCGAT
TCTGCTCTGAAGGCATTCTTGTGGCGCGCTCTCCGCCGGCAACGCAAGTA
TGTGTTCTGCAGGAAGACGGCAGtggcgaggccggggagcCAAAGAGGAG
CGatcaagggggaaaagaattGCAAAGCGGAAAATTGGGCGCACGCGCCT
CTAAACGCAGAGGAGTTGGACTCCCTGTCTCTGGATGCGTGGGACAGCGT
CATGGTTATTGCTTCCGAAGACCACCGTCTTCGCGCCTTGGGCGCCTTGC
ACGCCTCGGACCTGCCCGAAGAGACCCACGGGACGGAGATCTTGGAGATC
CTGGCCGCCGCGGGCAGCTGAATGCCAGAGCAGTCCGCCtcggcgggggg
cagggctAGCCGGGCTCCACCCCAAGTTGTTGTCAAAGCAGCCCTTGACC
ATGTTGCGCGACGAGgcagggaagggtgcACGGTTAAGGAGATATGGGAT
GAATGCGAGGTGGGCTGCGATTCTGCTCTGAAGGCATTCTTGTGGCGCGC
TCTCCGCCGGCAACGCAAGTATGTGTTCTGCAGGAAGACGGCAGtggcga
ggccggggagcCAAAGAGGAGCGatcaagggggaaaagaattGCAAAGCG
GAAAATTGGGCGCACGCGCCTCTAAACGCAGAGGAGTTGGACTCCCTGTC
TCTGGATGCGTGGGACAGCGTCATGGTTATTGCTTCCGAAGACCACCGTC
TTCGCGCCTTGGGCGCCTTGCACGCCTCGGACCTGCCCGAAGAGACCCAC
GGGACGGAGATCTTGGAGATCCTGGCCGCCGCGGGCAGCTGAATGCCAGA
GCAGTCCGCCtcggcggggggcagggctAGCCGGGCTCCACCCCAAGTTG
TTGTCAAAGCAGCCCTTGACCATGTTGCGCGACGAGgcagggaagggtgc
ACGGTTAAGGAGATATGGGATGAATGCGAGGTGGGCTGCGATTCTGCTCT
GAAGGCATTCTTGTGGCGCGCTCTCCGCCGGCAACGCAAGTATGTGTTCT
GCAGGAAGACGGCAGtggcgaggccggggagcCAAAGAGGAGCGatcaag
ggggaaaagaattGCAAAGCGGAAAATTGGGCGCACGCGCCTCTAAACGC
AGAGGAGTTGGACTCCCTGTCTCTGGATGCGTGGGACAGCGTCATGGTTA
TTGCTTCCGAAGACCACCGTCTTCGCGCCTTGGGCGCCTTGCACGCCTCG
GACCTGCCCGAAGAGACCCACGGGACGGAGATCTTGGAGATCCTGGCCGC
CGCGGGCAGCTGAATGCCAGAGCAGTCCGCCtcggcggggggcagggctA
GCCGGGCTCCACCCCAAGTTGTTGTCAAAGCAGCCCTTGACCATGTTGCG
CGACGAGgcagggaagggtgcACGGTTAAGGAGATATGGGATGAATGCGA
GGTGGGCTGCGATTCTGCTCTGAAGGCATTCTTGTGGCGCGCTCTCCGCC
GGCAACGCAAGTATGTGTTCTGCAGGAAGACGGCAGtggcgaggccgggg
agcCAAAGAGGAGCGatcaagggggaaaagaattGCAAAGCGGAAAATTG
GGCGCACGCGCCTCTAAACGCAGAGGAGTTGGACTCCCTGTCTCTGGATG
CGTGGGACAGCGTCATGGTTATTGCTTCCGAAGACCACCGTCTTCGCGCC
TTGGGCGCCTTGCACGCCTCGGACCTGCCCGAAGAGACCCACGGGACGGA
GATCTTGGAGATCCTGGCCGCCGCGGGCAGCTGAATGCCAGAGCAGTCCG
CCtcggcggggggcagggctAGCCGGGCTCCACCCCAAGTTGTTGTCAAA
GCAGCCCTTGACCATGTTGCGCGACGAGgcagggaagggtgcACGGTTAA
GGAGATATGGGATGAATGCGAGGTGGGCTGCGATTCTGCTCTGAAGGCAT
TCTTGTGGCGCGCTCTCCGCCGGCAACGCAAGTATGTGTTCTGCAGGAAG
ACGGCAGtggcgaggccggggagcCAAAGAGGAGCGatcaagggggaaaa
gaattGCAAAGCGGAAAATTGGGCGCACGCGCCTCTAAACGCAGAGGAGT
TGGACTCCCTGTCTCTGGATGCGTGGGACAGCGTCATGGTTATTGCTTCC
GAAGACCACCGTCTTCGCGCCTTGGGCGCCTTGCACGCCTCGGACCTGCC
CGAAGAGACCCACGGGACGGAGATCTTGGAGATCCTGGCCGCCGCGGGCA
GCTGA
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Synonyms
Publications