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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100049g11.2096.mrna |
| Orig protein id | gnl|cribi|Naga_100049g11.2096 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:505453..508132 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5656 ID=rna5656|Name=rna5656|organism=Nannochloropsis gaditana|type=mRNA|length=664bp
GGGGGGCGCATCCGGGAGCGAAATTTGAAATACTATCCCTGCCATCCACG
CTGACAGTGTCACAGCACCCCATCCTCCAGGAGAAGATGTCATTCGAGCT
GGACCTGGCGCTGCCCTTGCTCAAGGAGCCGGTTGATCAAATGCGGGAGG
GGTTGAAAGCAGGCGGCTTCAGAAGTGAAGCAGTTGCCCCCCACCCTGTG
CAGGCTTTCCAAGCCACGCGAAAAGAAGCAGAATTTCAAGCCCGCCTCGA
CACGATAGCAAGGTTGTACGGTATTGCTGCGGCCATGCGCCTGAAAACAG
AAAGAGACATTCTCAGTCGAGTTTGCCGGGCGCCCGGTCTTCCCTCGTCC
ATGGTGGGGCTGGAAACGGTGTTGGGAACCGATGAGACTATCGAGTTCGA
GGACGTGCTGAACGATCCGCAAGAGAGGCCCGATATGCCCTTGATTCCTG
TGCACGAGAGAATGGAGGCGCGGCTGGGGCTTTAAACGGATGCCGGGGAT
GGGTAACTCGTGGAGAGGGAGGGAAGGAGATAACATAGGTGTGGGGGGGT
TCATGGTGGAAGGAAGGAGAGCGGGATCATGCGCCTTGAAGGACACAGAG
CGTTGTACGAGGTGCAAAATCAAAGATTAAGTCAGCAAATACTCACAGCA
CGGTCATTCCCGTC back to topprotein sequence of rna5656 >rna5656-protein ID=rna5656-protein|Name=rna5656|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MMRRILFSVVGRSVLLLGCFQIPCTAWAYINPGGCLGSWSPSSSLSSMTG
SLRAGSGRAFSAGLRMAMSNDGGLPLGEEPEGTRVEEALRVTTRQIKALQ
RLVDSFQDVPPADQPPVFPPAEVRLPVATRESVEGDKAQVLELNAKYYDD
LNGRDVKSILSLWKEDGAVQMYANEDRVIRGLEEIDKHMDSRFKQPWATN
KHKERMDVTKEDERVFLRGINALVTNKEMWVNPISKDKLIMFSTKIWQKS
NGEWRLVHVHSGDGSQVEVHPNGQMKRGWRAGREGGREGGSGLEKEAKRE
GKAMLGVSFNLTSNHARAPCWLHGRASITRESHFSGHVPLPLPQCPKAAG
AWASSNSFPLPARVLQGDGWRRGSRNWGVSWGAF back to topmRNA from alignment at CM002466.1:505453..508132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5656 ID=rna5656|Name=rna5656|organism=Nannochloropsis gaditana|type=mRNA|length=2680bp|location=Sequence derived from alignment at CM002466.1:505453..508132+ (Nannochloropsis gaditana)
GAACCCTTGCGCTGTGTCTGTCGCCCCACTTTTTCTTGCTGtacacctcc
cttcccttctccaagGTGATGCAAGCGCACCGCTGGCATACAGAGGTCAT
GGTCGGGGTATGTGAGGTCACACTTTTGGCATCAATGGCGCGTGACATAC
TCCTCTTCATGCTTTTTCTCGGACAGGCGGGCCTACGGAATGATGAGAAG
GATATTATTCTCTGTAGTAGGGCGGAGCGTGCTTCTGCTCGGCTGCTTCC
AGATCCCCTGCACAGCCTGGGCGTACATCAATCCCGGGGGCTGTCTTGGC
TCCTGGAGTCCGTCATCTTCGTTATCAAGTATGACTGGATCACTTCGAGG
TAGGGATTTCGGGTGAGGGCCGAAAAAAAAGCGGATCGGTTCATTTTTCA
CGACTAAGGATATCACTGTTGGTGCACTGCGTTGCCCTGTAGTGGCGCCA
ACTTTTCGACTTGGCACGTGCATGACAGGCCTCGTTGTGTTCAATCACTT
TCTCTTGCCACTCACCCTAATCTCCCTTTAAATCCTCCGCAGCTGGCTCG
GGCAGAGCCTTCAGCGCCGGACTTCGCATGGCGATGAGCAACGACGGGGG
CCTGCCCCTTGGCGAAGAGCCGGAAGGGACTCGTGTGGAAGAGGCGCTGC
GCGTGACGACCCGTCAAATCAAGGCCTTGCAACGCTTGGTGGATAGCTTC
CAAGACGTACCGCCTGCAGATCAGCCACCCGTGTTTCCCCCGGCGGAGGT
GCGGTTGCCCGTGGCGACCCgggagagcgtggagggcgacaaagCGCAGG
TCCTCGAGTTGAACGCCAAGTACTACGACGATCTGAACGGCCGGGATGTG
AAGAGCATTTTGAGCCtatggaaggaggatggcgcgGTGCAGATGTACGC
GAACGAGGACCGCGTGATCCGGGGGTAAGgagctgaggagggaggaagag
ggggaagcgggcacTGGGACGAGGGCTGGGTCCGCGCTGTATTGGGGCAT
GCTCTGGCAAGGCTTGTCATTCCGGTGTGGGTTGTAATGTTCTTGTGTAG
TTTTAGCCTCCCCGACTGTCGGCGCCCGTCGTATCGACGCGGGGGGGCAA
GATGGTATGCGTGGATTGATTGATTGATTGACTCAACCCCTGGCTTCCCC
TCTGTCGCaggctggaggagatcgacAAGCACATGGACTCTCGTTTCAAA
CAGCCGTGGGCGACGAACAAACATAAAGAGCGCATGGACGTgacgaagga
agacgagcggGTCTTCCTCCGGGGCATCAACGCCTTGGTAACCAATAAGG
AGATGTGGGTCAACCCCATCAGCAAGGATAAGCTGATCATGTTCTCGACC
AAGATCTGGCAGAAGAGCAACGGGGAGTGGAGGCTGGTGCACGTGCACTC
GGGAGACGGGAGTCAGGTGGAAGTCCACCCGAACGGACAGATGAAAcgtg
ggtggagggcgggaagggagggagggagggaaggagggagcggattggag
aaagaggccaagagggagggaaaagcgatGCTTGGCGTGTCTTTTAATCT
CACGTCCAATCATGCGCGGGCTCCGTGTTGGCTGCATGGACGCGCGTCAA
TCACCAGGGAGTCTCATTTCTCCGGGCAtgttccccttcccctacccCAG
TGTCCGAAGGCAGCCGGGGCATGGGCCAGCAGCaactctttccctcttcc
agctcGGGTGTTACAGGGGGAcggctggaggcggggcagtCGCAACTGGG
GAGTGTCTTGGGGGGCCTTttagggggggggagcggcggTCTGGGCGGCA
TCGTGCCGGGGGAGTCGGGGTTCACAGCCGACGGGCGGGAATACCGGACC
ATCATGACGCCGGAGGGCTACCGCATCATCGTGGGATCGGGTCAAGCGCA
GGGTGGGCTGTTAGGGGCAGGGAGTGGTCAAGGTCGCTCCGGacaggaga
cgaaggaggctcTGCTGAAAGCGCTCATCCAGGACCTGTCGAAGAacggg
aagcaggaggtCATCCCCTTGCAGTTGGGggctcggggagggaggggcgg
cggggggggggaactcTTTTCAGGGTCTTTGGACGGCGGGCGAGGCCGAC
ggggtggcggagacggggcaAATGACGGTCTGGAGGACCTGGGTCGGAAG
ACGGTGGATGCGGTCCGACAGCTCTGCCACGAAGGGCGTCTCACGGTAAC
GCAGAAGCAGAAACTGATCTTCTCGGTGATCCGATCAACCAAGCAAGAGG
AGGTGTCGCAGGTAGAGATGGCGTACGATCTATTGGTGGAGAACGcgctg
gcgggggaagaCAGCGCATTGGAAGAGTTTGCGGATCAGTGTGTATTGCT
CTgcgcggcggggggggcggcgagtAGCTTGGTGTATGACGAGGCAGgcc
cggaggagggagaggatggtatCGACGAGTAAGTGTTTGGAAATAAGAGG
CTGGGGTGAAGGGGGATGTATTGCAAAATTGCGTGTCCGGTAAAATTGTG
TGGTAGTGTAGACATGCGTTTAATGACTCGGAGCTTGCTGTATGTCTGTA
GCAGGGTCAAAATGCGATAAGTAGGAGGATGCGGTGGCTTTCTAAAAGTC
AAGGGAGTGTACAGGATAACCAAGGGCAACAAGATCAAAGACGTTTGAGC
ACTTGCATGGTTTTGAAAGCATCCAGTTGA back to topCoding sequence (CDS) from alignment at CM002466.1:505453..508132+ >rna5656 ID=rna5656|Name=rna5656|organism=Nannochloropsis gaditana|type=CDS|length=3465bp|location=Sequence derived from alignment at CM002466.1:505453..508132+ (Nannochloropsis gaditana)
ATGATGAGAAGGATATTATTCTCTGTAGTAGGGCGGAGCGTGCTTCTGCT
CGGCTGCTTCCAGATCCCCTGCACAGCCTGGGCGTACATCAATCCCGGGG
GCTGTCTTGGCTCCTGGAGTCCGTCATCTTCGTTATCAAGTATGACTGGA
TCACTTCGAGCTGGCTCGGGCAGAGCCTTCAGCGCCGGACTTCGCATGGC
GATGAGCAACGACGGGGGCCTGCCCCTTGGCGAAGAGCCGGAAGGGACTC
GTGTGGAAGAGGCGCTGCGCGTGACGACCCGTCAAATCAAGGCCTTGCAA
CGCTTGGTGGATAGCTTCCAAGACGTACCGCCTGCAGATCAGCCACCCGT
GTTTCCCCCGGCGGAGGTGCGGTTGCCCGTGGCGACCCgggagagcgtgg
agggcgacaaagCGCAGGTCCTCGAGTTGAACGCCAAGTACTACGACGAT
CTGAACGGCCGGGATGTGAAGAGCATTTTGAGCCtatggaaggaggatgg
cgcgGTGCAGATGTACGCGAACGAGGACCGCGTGATCCGGGGgctggagg
agatcgacAAGCACATGGACTCTCGTTTCAAACAGCCGTGGGCGACGAAC
AAACATAAAGAGCGCATGGACGTgacgaaggaagacgagcggGTCTTCCT
CCGGGGCATCAACGCCTTGGTAACCAATAAGGAGATGTGGGTCAACCCCA
TCAGCAAGGATAAGCTGATCATGTTCTCGACCAAGATCTGGCAGAAGAGC
AACGGGGAGTGGAGGCTGGTGCACGTGCACTCGGGAGACGGGAGTCAGGT
GGAAGTCCACCCGAACGGACAGATGAAAcgtgggtggagggcgggaaggg
agggagggagggaaggagggagcggattggagaaagaggccaagagggag
ggaaaagcgatGCTTGGCGTGTCTTTTAATCTCACGTCCAATCATGCGCG
GGCTCCGTGTTGGCTGCATGGACGCGCGTCAATCACCAGGGAGTCTCATT
TCTCCGGGCAtgttccccttcccctacccCAGTGTCCGAAGGCAGCCGGG
GCATGGGCCAGCAGCaactctttccctcttccagctcGGGTGTTACAGGG
GGAcggctggaggcggggcagtCGCAACTGGGGAGTGTCTTGGGGGGCCT
TttagATGATGAGAAGGATATTATTCTCTGTAGTAGGGCGGAGCGTGCTT
CTGCTCGGCTGCTTCCAGATCCCCTGCACAGCCTGGGCGTACATCAATCC
CGGGGGCTGTCTTGGCTCCTGGAGTCCGTCATCTTCGTTATCAAGTATGA
CTGGATCACTTCGAGCTGGCTCGGGCAGAGCCTTCAGCGCCGGACTTCGC
ATGGCGATGAGCAACGACGGGGGCCTGCCCCTTGGCGAAGAGCCGGAAGG
GACTCGTGTGGAAGAGGCGCTGCGCGTGACGACCCGTCAAATCAAGGCCT
TGCAACGCTTGGTGGATAGCTTCCAAGACGTACCGCCTGCAGATCAGCCA
CCCGTGTTTCCCCCGGCGGAGGTGCGGTTGCCCGTGGCGACCCgggagag
cgtggagggcgacaaagCGCAGGTCCTCGAGTTGAACGCCAAGTACTACG
ACGATCTGAACGGCCGGGATGTGAAGAGCATTTTGAGCCtatggaaggag
gatggcgcgGTGCAGATGTACGCGAACGAGGACCGCGTGATCCGGGGgct
ggaggagatcgacAAGCACATGGACTCTCGTTTCAAACAGCCGTGGGCGA
CGAACAAACATAAAGAGCGCATGGACGTgacgaaggaagacgagcggGTC
TTCCTCCGGGGCATCAACGCCTTGGTAACCAATAAGGAGATGTGGGTCAA
CCCCATCAGCAAGGATAAGCTGATCATGTTCTCGACCAAGATCTGGCAGA
AGAGCAACGGGGAGTGGAGGCTGGTGCACGTGCACTCGGGAGACGGGAGT
CAGGTGGAAGTCCACCCGAACGGACAGATGAAAcgtgggtggagggcggg
aagggagggagggagggaaggagggagcggattggagaaagaggccaaga
gggagggaaaagcgatGCTTGGCGTGTCTTTTAATCTCACGTCCAATCAT
GCGCGGGCTCCGTGTTGGCTGCATGGACGCGCGTCAATCACCAGGGAGTC
TCATTTCTCCGGGCAtgttccccttcccctacccCAGTGTCCGAAGGCAG
CCGGGGCATGGGCCAGCAGCaactctttccctcttccagctcGGGTGTTA
CAGGGGGAcggctggaggcggggcagtCGCAACTGGGGAGTGTCTTGGGG
GGCCTTttagATGATGAGAAGGATATTATTCTCTGTAGTAGGGCGGAGCG
TGCTTCTGCTCGGCTGCTTCCAGATCCCCTGCACAGCCTGGGCGTACATC
AATCCCGGGGGCTGTCTTGGCTCCTGGAGTCCGTCATCTTCGTTATCAAG
TATGACTGGATCACTTCGAGCTGGCTCGGGCAGAGCCTTCAGCGCCGGAC
TTCGCATGGCGATGAGCAACGACGGGGGCCTGCCCCTTGGCGAAGAGCCG
GAAGGGACTCGTGTGGAAGAGGCGCTGCGCGTGACGACCCGTCAAATCAA
GGCCTTGCAACGCTTGGTGGATAGCTTCCAAGACGTACCGCCTGCAGATC
AGCCACCCGTGTTTCCCCCGGCGGAGGTGCGGTTGCCCGTGGCGACCCgg
gagagcgtggagggcgacaaagCGCAGGTCCTCGAGTTGAACGCCAAGTA
CTACGACGATCTGAACGGCCGGGATGTGAAGAGCATTTTGAGCCtatgga
aggaggatggcgcgGTGCAGATGTACGCGAACGAGGACCGCGTGATCCGG
GGgctggaggagatcgacAAGCACATGGACTCTCGTTTCAAACAGCCGTG
GGCGACGAACAAACATAAAGAGCGCATGGACGTgacgaaggaagacgagc
ggGTCTTCCTCCGGGGCATCAACGCCTTGGTAACCAATAAGGAGATGTGG
GTCAACCCCATCAGCAAGGATAAGCTGATCATGTTCTCGACCAAGATCTG
GCAGAAGAGCAACGGGGAGTGGAGGCTGGTGCACGTGCACTCGGGAGACG
GGAGTCAGGTGGAAGTCCACCCGAACGGACAGATGAAAcgtgggtggagg
gcgggaagggagggagggagggaaggagggagcggattggagaaagaggc
caagagggagggaaaagcgatGCTTGGCGTGTCTTTTAATCTCACGTCCA
ATCATGCGCGGGCTCCGTGTTGGCTGCATGGACGCGCGTCAATCACCAGG
GAGTCTCATTTCTCCGGGCAtgttccccttcccctacccCAGTGTCCGAA
GGCAGCCGGGGCATGGGCCAGCAGCaactctttccctcttccagctcGGG
TGTTACAGGGGGAcggctggaggcggggcagtCGCAACTGGGGAGTGTCT
TGGGGGGCCTTttag back to top
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