rna5655, rna5655 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5655
Unique Name	rna5655
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3431
Alignment location	CM002466.1:504254..505250 -

Link to JBrowse

Properties


Property Name	Value
Product	proteasome maturation factor ump1 family protein
Orig transcript id	gnl\|cribi\|Naga_100049g12.2087.mrna
Orig protein id	gnl\|cribi\|Naga_100049g12.2087
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:504254..505250 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100049g12	gene5464	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5655	rna5655-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25028.1	cds5640	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:504254..505250-
coding sequence from alignment at CM002466.1:504254..505250-

mRNA sequence

>rna5655 ID=rna5655|Name=rna5655|organism=Nannochloropsis gaditana|type=mRNA|length=3431bp
GGGTCAAAAGTAGAAGCCCAGGTCCACAACTCTCAGATTGCAACGCAGCA
TAGTTCAGCATACCCTCTCGGAGGGCAAATATTTGGTAAGAATTCTCGCA
AAAGGATATTTATTCGTCTTTTAACCTCATTACTACCCTGTATATGTAAA
ATTAAAGAAGCAATCTGTGTTGCTTTGCCGAGGATTGGCACAGAGATTCT
TCTCCTTGAATACGTTGCATGTCACAAAGGAAAAACGTCGCAGTAAGTCA
TCGATCACGAATGATCTTAACTTTTTGATATATTTGTTGAATACACGAGT
AGTGTCTGTCATGTTAATCCTGTAGGAGGTGCTTAAAATGAGAGACGTCC
AAATCCTGAAGCCCGGGCTCGTTGGGCTGGGGAGGTTTTTGAAAAAGCAG
GGATTTAAGAAATGCCCGGGGACATCAGAAGAATCAATCAGAATGTTTAC
AAGCGAATGAAGACTTGGATACTGGACAGACATCATATCCGTAGTCTACA
ACAATGGTATGCATGCGCCTTGCACGCAGTGTGTCACGCCTTCGTACCTT
TCTAGCCATTGTTGTTTTTTTCCTTGATCTTAACAATTTGCAGGTCTGTC
GCTTCCGTTCCTCTTCTCAGATTCGACTAATCACTATTAGTGGAGAAAAA
GTGGTTTTTCACTGGGACAACCACTCGCGTCGACCACCAAAATAAAGTTG
GTTTGCCGATGACCCAGCAATCGGTGGCGAGCAGCAGTGGTGCCTCAGGC
CCGCCGTCGTCAATGCAGACCAGGAGGTCTGCGGTAAGCTTCGTCTCCGA
AGCTGGTGAAGAGAAAGCGTCTCTCTTGCCCACCAAGGCCACCTTTCCTC
GGAGCAAGACCTTACCACTTCACGCTCTATGGCAGCATCGGAGCGGCAGC
GAGACGGATGAGACAAACGATGATGAGTACGACCCGTGCCTCCTTGACAC
GGAGGAGGAGGGAGGTGATGCAGGCTTTTTGATGTGCCCGGAGGCGGAAG
ACTACGGTATTGCTGCACTCCGACAGCAGCCATCCGTCTTTCCGCAACCC
TCAGAAGAATTACCGACGACAATCACCCCGGCGCAGCGCAAGCCGTTGCT
GCACATCCCGTACTTACCTTGGATGCGGTACAAGGGTTACTTTAAAAAGA
ATTTTGGGAAAGACCTGATGGCCGGTATCGTTGTCAGCGTGGTCGCCATT
CCGCAGGGTTTGGCCTATGCTGTTCTGGCCTCGTTACCGGCGCAAATGGG
GCTCTATACCTCCTGCATCCCCCCACTCGTGTACGGCTTCCTCGGCACCT
CGAGGCACCTGAGCGCAGGACCTGTGGCGCTCGTCAGCATGTTCATTCCT
CAGATTGCCGTCTCCCTCCACATGAGTGAGGACTCGAATCTCCGCGTTAT
CGTGGCGGCCGCCGCCTGCGTCGTGTCCGGCCTCCTCCTCCTGGTCGTCG
GCGTCTTCCGCATGGGATCCTTGGTCAAATTCATCAGCTCCCCCGTCCTA
GCCGGCTTCACCACCGCGGCCGCTGTCGTCATCGGGGTGGACCAGCTCCA
GCACCTGGTGGGCTACCCTTTCAGCAAGGACTCTAAGTACAACTGGGACA
TGGTGAACGACCTGATCGCCAACGTGGGCGAGACCAACCCCCTCACCCTC
CTGATCGGTGGGAGCACCGTCCTTTTCCTCGTCGGGGTCCGCCAGGTCTC
CCGCAAGCACAAGAAGGTGAAATGGCTCAAGCTCCTCAGCGTCACCTCCA
CCCTGATCGCCGTCGTCTGCGCCACCACGGCCGCCTTCCTCTTTAGCCAC
CAGGGCTACCACCTCCCCCTTGTCGGCCACGTCCCCGCGGGCCTGCCCCA
TTTCCTGGTCCCAAGCGCCGCCATCACCGACTTGGCCAGCGTGGGCAGCC
TGGTAGTAGCCTGCATGCCCGTGACCTGCCTGGCCTTCATGAGTTCCTGG
AGCTTGGCCCGGAACTACGCGGTCAAGTCCGGGCAGACGGACTTGGACGC
CAACCAAGAAGCGGTCAGTCAGGCCCTGCACGCCCCTACGTTTCCAACGC
GGTCATCTTCCTCGATCTCACCCTTGCCCTTACTCCCCTCCCCCGTGGCA
CCAGGTGGCGATCGGCGCCGCCAATTTCGTGGCTGGCTTCTTCCTCTGCT
TCCCCAGCTCCGGCTCCTTCGGCCGCACCTCCCTCAACGCCCAGAACGGG
GCCCGCTCCCCTCTCAGCAACGTCTCCGCCAGCCTGGCCGTCTTTCTCGT
CCTCCTCTGCTTGACCCCGTACCTCTACTACCTGCCCATGTGCTGCCTGG
GCGCCATCATCCAGGTCTCTCTCATCTCTCTTTTTGACCTCAAGCCCTTC
AAGCGCGCCTACAAGATCTCCATGCCGGACTTTGTGGTGACCATGACCAC
CTTCCTCTTCACCGCCCTGGTCAACATCGAGGTCGGCCTTGTCACCGGCG
TCCTCGTCAGCATCGCCGTCTTGCTTCAGGAGCTGAGCGAGATCCACACA
TCCACCTTGGTCCCCGTCGCGAGCAGCGGGGGGGGGTACATGGTCAGGTC
GCAGAGCGTGGACCCCGTGCACCTGCTGGAGGAGTCTCAGGACATCAAGG
TGGTGCGGCTGACGGCCTCGCTATTTTTCGGGAACAACGAGGAGATGAAG
ACCGAGTTTGAAGGGCTCTTGTCTGCGGGAGGAGACGACGGGCAGGGGGA
AGGGCTGGGCCTTGGGGGGGGGCACCCACCGAGGGCGATCGTCATCGATG
CCAGCGGCGTCTCTCACCTGGACCTGAGCGGCGTGGAGGCGGTCGAGCAC
TTGCAGAAGCTCGCCTTGGAGAAGGGGGTGAAACTGGCCTTCGTGAACGC
CAAGGGCGTCTTCAGAGACCGGCTTCGCGCCTCCAAGCTGTGGGAGAAGG
TGGGGGGGGAGGCCTACGACTCCATGAGCGTGGACGAGGTGGTCACGCAC
CTGGTGATGGAGATGGGCATGCAGCCTTTCCCCCCCGGGGGGGGGCAGCA
GGCTATGGCAAACTCCGGCTTGCGGCCCCATCTTGGGAAGGGAAACGGAC
ACAGCGCAAGCTATCGACCTGCCGGGGAGCCGCCACTCATCAGTGGGGCC
CCGCACCAAGGGCCAGTAAAGGGTATCGGCACCGGGCCTGGGAGAGACGG
GGAGGCGACTGGAGGGGCCAAGCCGACGGGCGAGGGAGCGAAGGCCGGGA
AGTATGGGGCGGTGTGAGGGTGACGGACGAGGGGAGGACAGAGTACAAGA
CAGCACGAGAGATGGGGGTGGGTGCGAAGGACGAGTTGATATTGAGGCAA
GGCCGCGGGGCATGTAGAAAACCTTGAGGGGCGCGATATGACGGGGAGCG
GCTTATGGAGTATTTCATTGGCAGAAAGCCTGGGCGCGAAAGGTGTTTCA
AAGAAATCTTGACGGGAATGACCGTGCTGTG

protein sequence of rna5655

>rna5655-protein ID=rna5655-protein|Name=rna5655|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEF
QARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDE
TIEFEDVLNDPQERPDMPLIPVHERMEARLGL

mRNA from alignment at CM002466.1:504254..505250-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5655 ID=rna5655|Name=rna5655|organism=Nannochloropsis gaditana|type=mRNA|length=997bp|location=Sequence derived from alignment at CM002466.1:504254..505250- (Nannochloropsis gaditana)
GGGGGGCGCATCCGGGAGCGAAATTTGAAATACTATCCCTGCCATCCACG
CTGACAGTGTCACAGCACCCCATCCTCCAGGAGAAGATGTCATTCGAGCT
GGACCTGGCGCTGCCCTTGCTCAAGGAGCCGGTTGATCAAATGCGGGAGG
GGTTGAAAGCAGGCGGCTTCAGAAGTGAAGCAGTTGCCCCCCACCCTGTG
CAGGCTTTCCAAGCCACGGTACGTGCCATTGGAGAATTTGCAATTATCCT
ACCTGGTTGCGGAAAATGTAAAATAGCATGCTTCGATAGATCCCATGGTG
TCCAAGGTCGTAGTGGCTTGACTTCTTTTTCGTTTGAGATACCGGCCATG
TGCGTCCTTCTTCAATTGCTTCCTATGCTCCGCTTGCTCTACGTGCGCGT
TAGTGAAGGGGACTTCGAGCAAGTGTGCGCAGAAGTGAACTCTGTTTTCC
GTACTTCCGTGTAATTTCGCGTCACTGTCATCGTCTTGAAGCGTGAAGCC
CGGATCGAAGCACGTGTGAGCATACTCATCTTTGTCCTGCACGCCCGACA
GCGAAAAGAAGCAGAATTTCAAGCCCGCCTCGACACGATAGCAAGGTTGT
ACGGTATTGCTGCGGCCATGCGCCTGAAAACAGAAAGAGACATTCTCAGT
CGAGTTTGCCGGGCGCCCGGTCTTCCCTCGTCCATGGTGGGGCTGGAAAC
GGTGTTGGGAACCGATGAGACTATCGAGTTCGAGGACGTGCTGAACGATC
CGCAAGAGAGGCCCGATATGCCCTTGATTCCTGTGCACGAGAGAATGGAG
GCGCGGCTGGGGCTTTAAACGGATGCCGGGGATGGGTAACTCGTGGAGAG
GGAGGGAAGGAGATAACATAGGTGTGGGGGGGTTCATGGTGGAAGGAAGG
AGAGCGGGATCATGCGCCTTGAAGGACACAGAGCGTTGTACGAGGTGCAA
AATCAAAGATTAAGTCAGCAAATACTCACAGCACGGTCATTCCCGTC

Coding sequence (CDS) from alignment at CM002466.1:504254..505250-

>rna5655 ID=rna5655|Name=rna5655|organism=Nannochloropsis gaditana|type=CDS|length=798bp|location=Sequence derived from alignment at CM002466.1:504254..505250- (Nannochloropsis gaditana)
CGAAAAGAAGCAGAATTTCAAGCCCGCCTCGACACGATAGCAAGGTTGTA
CGGTATTGCTGCGGCCATGCGCCTGAAAACAGAAAGAGACATTCTCAGTC
GAGTTTGCCGGGCGCCCGGTCTTCCCTCGTCCATGGTGGGGCTGGAAACG
GTGTTGGGAACCGATGAGACTATCGAGTTCGAGGACGTGCTGAACGATCC
GCAAGAGAGGCCCGATATGCCCTTGATTCCTGTGCACGAGAGAATGGAGG
CGCGGCTGGGGCTTTAAATGTCATTCGAGCTGGACCTGGCGCTGCCCTTG
CTCAAGGAGCCGGTTGATCAAATGCGGGAGGGGTTGAAAGCAGGCGGCTT
CAGAAGTGAAGCAGTTGCCCCCCACCCTGTGCAGGCTTTCCAAGCCACGC
GAAAAGAAGCAGAATTTCAAGCCCGCCTCGACACGATAGCAAGGTTGTAC
GGTATTGCTGCGGCCATGCGCCTGAAAACAGAAAGAGACATTCTCAGTCG
AGTTTGCCGGGCGCCCGGTCTTCCCTCGTCCATGGTGGGGCTGGAAACGG
TGTTGGGAACCGATGAGACTATCGAGTTCGAGGACGTGCTGAACGATCCG
CAAGAGAGGCCCGATATGCCCTTGATTCCTGTGCACGAGAGAATGGAGGC
GCGGCTGGGGCTTTAAATGTCATTCGAGCTGGACCTGGCGCTGCCCTTGC
TCAAGGAGCCGGTTGATCAAATGCGGGAGGGGTTGAAAGCAGGCGGCTTC
AGAAGTGAAGCAGTTGCCCCCCACCCTGTGCAGGCTTTCCAAGCCACG

Synonyms

Publications