EWM25028.1, cds5640 (CDS) Nannochloropsis gaditana

Overview
NameEWM25028.1
Unique Namecds5640
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:505033..505164 -
Alignment locationCM002466.1:504433..504699 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25028.1
Productproteasome maturation factor ump1 family protein
Orig transcript idgnl|cribi|Naga_100049g12.2087.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:505033..505164 -
CM002466.1supercontigCM002466.1:504433..504699 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008012UMP1
Homology
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|585106664|gb|EWM25028.1| (proteasome maturation factor ump1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 265.003 bits (676), Expect = 9.508e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL
Sbjct:    1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|298706300|emb|CBJ29315.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 118.242 bits (295), Expect = 1.186e-31
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            A+P+ + P DQMR G  +  F  +A A HP++A    R   EF  ++D   ++YG A  MR+KTE   LS+    PGLPSSM+GLETVLG DET+EFED L+ P +RP+ P   VHE ME + GL
Sbjct:    8 AMPMARAPHDQMRFGFSS--FAQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 130          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|567945767|gb|ETK71578.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|567974421|gb|ETL25015.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568003890|gb|ETL78230.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570935734|gb|ETP00991.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970637368|gb|KUF81428.1| Proteasome maturation protein [Phytophthora nicotianae] >gi|970648889|gb|KUF88306.1| Proteasome maturation protein [Phytophthora nicotianae])

HSP 1 Score: 108.997 bits (271), Expect = 4.021e-28
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            LPL++ P D +R G  +    SE V P H VQ  Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L +  R PGLPSS  GL+T+ G DE IEF D LNDP E P+     VHE ME +L +
Sbjct:    6 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPENTF-RVHEAMEVKLSI 126          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|675179601|ref|XP_008898685.1| (hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >gi|566008263|gb|ETI31174.1| hypothetical protein F443_21813 [Phytophthora parasitica P1569] >gi|568033796|gb|ETM31490.1| hypothetical protein L914_20948 [Phytophthora parasitica] >gi|568101665|gb|ETN16351.1| hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >gi|570311943|gb|ETO59891.1| hypothetical protein F444_21836 [Phytophthora parasitica P1976] >gi|570966013|gb|ETP29132.1| hypothetical protein F442_21673 [Phytophthora parasitica P10297])

HSP 1 Score: 108.997 bits (271), Expect = 8.484e-28
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            LPL++ P D +R G  +    SE V P H VQ  Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L +  R PGLPSS  GL+T+ G DE IEF D LNDP E P+     VHE ME +L +
Sbjct:   27 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 147          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|675179599|ref|XP_008898684.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566008264|gb|ETI31175.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567945766|gb|ETK71577.1| hypothetical protein L915_21207 [Phytophthora parasitica] >gi|567974420|gb|ETL25014.1| hypothetical protein L916_21075 [Phytophthora parasitica] >gi|568003889|gb|ETL78229.1| hypothetical protein L917_20931 [Phytophthora parasitica] >gi|568033797|gb|ETM31491.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568101666|gb|ETN16352.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570311944|gb|ETO59892.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570935733|gb|ETP00990.1| hypothetical protein F441_21694 [Phytophthora parasitica CJ01A1] >gi|570966014|gb|ETP29133.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 108.612 bits (270), Expect = 9.413e-28
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            LPL++ P D +R G  +    SE V P H VQ  Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L +  R PGLPSS  GL+T+ G DE IEF D LNDP E P+     VHE ME +L +
Sbjct:   21 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 141          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|301118314|ref|XP_002906885.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108234|gb|EEY66286.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 107.842 bits (268), Expect = 1.072e-27
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            +LPL++ P D +R G  +    SE V P H VQ  Q T +++ ++ ++ T+ ++YG AAAMRL++E+ +L +  R PGLPSS  GL+T+ G DE IEF D LNDP E P+     VHE ME +L +
Sbjct:    5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRSEKAVLEQFTRLPGLPSSHAGLDTLTGADEQIEFTDFLNDPNEHPENTF-RVHEAMEVKLSI 126          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|673021284|ref|XP_008864603.1| (hypothetical protein H310_02758 [Aphanomyces invadans] >gi|574479534|gb|ETW06528.1| hypothetical protein H310_02758 [Aphanomyces invadans])

HSP 1 Score: 107.071 bits (266), Expect = 2.785e-27
Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            +LPLL+   D MR G +     SE   P H VQ  +  R+   F+ ++ ++ ++YG AAAMRL+TE+ +L +  R PGLPSS  GL+TVLG D+T++F D+LNDPQ+ P+ P   VH+ ME +L +
Sbjct:    5 SLPLLRAGPDLMRVGFQRA---SEDTRPVHEVQRLETHRRLRGFEGKMRSVEQIYGKAAAMRLRTEKILLEQHTRLPGLPSSRCGLDTVLGNDDTLDFTDILNDPQDSPEAPQFRVHDVMEVKLAI 127          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|695377501|ref|XP_009516025.1| (hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae] >gi|348688936|gb|EGZ28750.1| hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae])

HSP 1 Score: 106.301 bits (264), Expect = 4.140e-27
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            +LPL++ P D +R G  +    SE V P H VQ  Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L +  R PGLPSS  G++T+ G DE I+F D LNDP E P+     VHE ME +L +
Sbjct:    5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGVDTLTGEDEQIDFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 126          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|1173933685|gb|OQR85315.1| (hypothetical protein THRCLA_23042 [Thraustotheca clavata])

HSP 1 Score: 103.99 bits (258), Expect = 4.547e-26
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            +LPLL+   D +R G ++    S AV  H VQ  +  ++   F+ +++T+ ++YG AAAMRL+TE+ +L +  R PGLPSS VGL+T+LG D+ I+F DVLN+P E P+     VH+ ME +L +
Sbjct:    5 SLPLLRAGPDVLRVGWQSAAQDSRAV--HEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEATF-RVHDAMEVKLAI 126          
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|813103301|ref|XP_012194089.1| (hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65] >gi|641541984|gb|KDO35729.1| hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 101.293 bits (251), Expect = 4.145e-25
Identity = 52/125 (41.60%), Postives = 84/125 (67.20%), Query Frame = 0
Query:    8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
            +LPLL+   D +R G +      +A   H VQ  +  R+   F+A+++++ ++YG AAAMRL+TE+ +L +  R PGLPSS VGL+T++G D+T++F D+LN+PQE P++    VH+ ME +L +
Sbjct:    5 SLPLLRAGPDVLRVGWQRAD--QDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEVHF-RVHDAMEVKLAI 126          
The following BLAST results are available for this feature:
BLAST of EWM25028.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106664|gb|EWM25028.1|9.508e-90100.00proteasome maturation factor ump1 family protein [... [more]
gi|298706300|emb|CBJ29315.1|1.186e-3148.80conserved unknown protein [Ectocarpus siliculosus][more]
gi|567945767|gb|ETK71578.1|4.021e-2845.60hypothetical protein, variant [Phytophthora parasi... [more]
gi|675179601|ref|XP_008898685.1|8.484e-2845.60hypothetical protein PPTG_06511 [Phytophthora para... [more]
gi|675179599|ref|XP_008898684.1|9.413e-2845.60hypothetical protein, variant [Phytophthora parasi... [more]
gi|301118314|ref|XP_002906885.1|1.072e-2744.44conserved hypothetical protein [Phytophthora infes... [more]
gi|673021284|ref|XP_008864603.1|2.785e-2744.44hypothetical protein H310_02758 [Aphanomyces invad... [more]
gi|695377501|ref|XP_009516025.1|4.140e-2743.65hypothetical protein PHYSODRAFT_353577 [Phytophtho... [more]
gi|1173933685|gb|OQR85315.1|4.547e-2643.20hypothetical protein THRCLA_23042 [Thraustotheca c... [more]
gi|813103301|ref|XP_012194089.1|4.145e-2541.60hypothetical protein SPRG_18875 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5655rna5655Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications