EWM25028.1, cds5640 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|585106664|gb|EWM25028.1| (proteasome maturation factor ump1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 265.003 bits (676), Expect = 9.508e-90 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query: 1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL
Sbjct: 1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|298706300|emb|CBJ29315.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 118.242 bits (295), Expect = 1.186e-31 Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
A+P+ + P DQMR G + F +A A HP++A R EF ++D ++YG A MR+KTE LS+ PGLPSSM+GLETVLG DET+EFED L+ P +RP+ P VHE ME + GL
Sbjct: 8 AMPMARAPHDQMRFGFSS--FAQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 130
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|567945767|gb|ETK71578.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|567974421|gb|ETL25015.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568003890|gb|ETL78230.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570935734|gb|ETP00991.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970637368|gb|KUF81428.1| Proteasome maturation protein [Phytophthora nicotianae] >gi|970648889|gb|KUF88306.1| Proteasome maturation protein [Phytophthora nicotianae]) HSP 1 Score: 108.997 bits (271), Expect = 4.021e-28 Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
LPL++ P D +R G + SE V P H VQ Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L + R PGLPSS GL+T+ G DE IEF D LNDP E P+ VHE ME +L +
Sbjct: 6 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPENTF-RVHEAMEVKLSI 126
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|675179601|ref|XP_008898685.1| (hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >gi|566008263|gb|ETI31174.1| hypothetical protein F443_21813 [Phytophthora parasitica P1569] >gi|568033796|gb|ETM31490.1| hypothetical protein L914_20948 [Phytophthora parasitica] >gi|568101665|gb|ETN16351.1| hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >gi|570311943|gb|ETO59891.1| hypothetical protein F444_21836 [Phytophthora parasitica P1976] >gi|570966013|gb|ETP29132.1| hypothetical protein F442_21673 [Phytophthora parasitica P10297]) HSP 1 Score: 108.997 bits (271), Expect = 8.484e-28 Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
LPL++ P D +R G + SE V P H VQ Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L + R PGLPSS GL+T+ G DE IEF D LNDP E P+ VHE ME +L +
Sbjct: 27 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 147
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|675179599|ref|XP_008898684.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566008264|gb|ETI31175.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567945766|gb|ETK71577.1| hypothetical protein L915_21207 [Phytophthora parasitica] >gi|567974420|gb|ETL25014.1| hypothetical protein L916_21075 [Phytophthora parasitica] >gi|568003889|gb|ETL78229.1| hypothetical protein L917_20931 [Phytophthora parasitica] >gi|568033797|gb|ETM31491.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568101666|gb|ETN16352.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570311944|gb|ETO59892.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570935733|gb|ETP00990.1| hypothetical protein F441_21694 [Phytophthora parasitica CJ01A1] >gi|570966014|gb|ETP29133.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 108.612 bits (270), Expect = 9.413e-28 Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 9 LPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
LPL++ P D +R G + SE V P H VQ Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L + R PGLPSS GL+T+ G DE IEF D LNDP E P+ VHE ME +L +
Sbjct: 21 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 141
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|301118314|ref|XP_002906885.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108234|gb|EEY66286.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 107.842 bits (268), Expect = 1.072e-27 Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
+LPL++ P D +R G + SE V P H VQ Q T +++ ++ ++ T+ ++YG AAAMRL++E+ +L + R PGLPSS GL+T+ G DE IEF D LNDP E P+ VHE ME +L +
Sbjct: 5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRSEKAVLEQFTRLPGLPSSHAGLDTLTGADEQIEFTDFLNDPNEHPENTF-RVHEAMEVKLSI 126
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|673021284|ref|XP_008864603.1| (hypothetical protein H310_02758 [Aphanomyces invadans] >gi|574479534|gb|ETW06528.1| hypothetical protein H310_02758 [Aphanomyces invadans]) HSP 1 Score: 107.071 bits (266), Expect = 2.785e-27 Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
+LPLL+ D MR G + SE P H VQ + R+ F+ ++ ++ ++YG AAAMRL+TE+ +L + R PGLPSS GL+TVLG D+T++F D+LNDPQ+ P+ P VH+ ME +L +
Sbjct: 5 SLPLLRAGPDLMRVGFQRA---SEDTRPVHEVQRLETHRRLRGFEGKMRSVEQIYGKAAAMRLRTEKILLEQHTRLPGLPSSRCGLDTVLGNDDTLDFTDILNDPQDSPEAPQFRVHDVMEVKLAI 127
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|695377501|ref|XP_009516025.1| (hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae] >gi|348688936|gb|EGZ28750.1| hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae]) HSP 1 Score: 106.301 bits (264), Expect = 4.140e-27 Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAP-HPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
+LPL++ P D +R G + SE V P H VQ Q T +++ ++ ++ T+ ++YG AAAMRL+TE+ +L + R PGLPSS G++T+ G DE I+F D LNDP E P+ VHE ME +L +
Sbjct: 5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGVDTLTGEDEQIDFTDFLNDPNEHPEN-TFRVHEAMEVKLSI 126
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|1173933685|gb|OQR85315.1| (hypothetical protein THRCLA_23042 [Thraustotheca clavata]) HSP 1 Score: 103.99 bits (258), Expect = 4.547e-26 Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
+LPLL+ D +R G ++ S AV H VQ + ++ F+ +++T+ ++YG AAAMRL+TE+ +L + R PGLPSS VGL+T+LG D+ I+F DVLN+P E P+ VH+ ME +L +
Sbjct: 5 SLPLLRAGPDVLRVGWQSAAQDSRAV--HEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEATF-RVHDAMEVKLAI 126
BLAST of EWM25028.1 vs. NCBI_GenBank
Match: gi|813103301|ref|XP_012194089.1| (hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65] >gi|641541984|gb|KDO35729.1| hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 101.293 bits (251), Expect = 4.145e-25 Identity = 52/125 (41.60%), Postives = 84/125 (67.20%), Query Frame = 0
Query: 8 ALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
+LPLL+ D +R G + +A H VQ + R+ F+A+++++ ++YG AAAMRL+TE+ +L + R PGLPSS VGL+T++G D+T++F D+LN+PQE P++ VH+ ME +L +
Sbjct: 5 SLPLLRAGPDVLRVGWQRAD--QDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEVHF-RVHDAMEVKLAI 126 The following BLAST results are available for this feature:
BLAST of EWM25028.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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