rna5645, rna5645 (mRNA) Nannochloropsis gaditana

Overview
Namerna5645
Unique Namerna5645
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationCM002466.1:473335..474177 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g21.2084.mrna
Orig protein idgnl|cribi|Naga_100049g21.2084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:473335..474177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g21gene5455Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25025.1cds5630Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5645rna5645-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5645 ID=rna5645|Name=rna5645|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGGCATCCTATGTATGGTTTCCGCAAGCCACTGCTGTTCATTTTGAAGG
ACATCACCATCTCGAGCTTCACGAGCAGAGCGAGTCAATGAAATGGAAAC
ACCAGCATGCTGCAGCCCTGGCAGCACTTGAGCAACCAACACAAGCGGCC
GAAGATCTGTCGTTCCTGTACCGAAAGACATCCGTGGCACAAGCGCTGGC
AGAAGGCTTGCAAGAGTTCTCAGAAACACAAGACCTGCCCGAAAATGTGG
TAGCAGATACCATGGAGGCATTCGACAAGGCCATTCTCACAGCGATGGAG
ACAGTGCGGAATGTGGCAGGCAGGGCGAAGGGAGAGGCGGAGCTGGATGC
GTACAATAACATAAACGAGCGCTGGCGTTTCGTATTCCAGGACGGTGCCT
CGCTGGCGACAGTATCGGACATGTCCTTGTACGCGGAGCAGGACGGGGAT
GTAGCAGGCTGCATTATAGGACCCTGTAGCGTGAGCGCGGTGGATGTGGC
CAAGGTGGTGAAGGGGGGCAACGTGCGGCATGGCCCGGGCCGAGCTAAGG
GATGA
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protein sequence of rna5645

>rna5645-protein ID=rna5645-protein|Name=rna5645|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MSPFLGKNIFVLALAFHVLLCQAYVATDNIARGISAISQLYKAKIDDMSI
CRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLK
ETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSY
HNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHL
LREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGG
FWRVYELDCPGMINCRILERFSSNTFQFRA
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mRNA from alignment at CM002466.1:473335..474177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5645 ID=rna5645|Name=rna5645|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002466.1:473335..474177- (Nannochloropsis gaditana)
ATGTCTCCTTTTCTTGGAAAGAACATTTTTGTGTTGGCCTTGGCGTTCCA
TGTTCTCCTTTGTCAGGCGTATGTAGCCACGGATAACATAGCAAGGGGAA
TCAGTGCCATAAGTCAGCTATATAAGGCCAAAATAGATGATATGTCCATA
TGCCGACACGTACACTTGTCCCTGAGGCCCACACCACGAAAGTCGCGGCT
CCACTTGCAAGATCAGACTACTCGTCACGACACTGACGCATGCTCGCCAA
AACGGGACGCAGCACTTGAGCGCCAAAGCACCGCGTTTGAGCCCCTGAAA
GAAACAGCAATGTACGGCAATTTTCGTTCGGGGATATCAGAGCGCGTGGG
GTCCAAGGACGTGGAAATTCGATTGCCGGAGTCATTCAGTCCGCTCGAGC
GAGTGGCACTGTCCGCGGAGGGCGACTTGCAACGTATTATCAGCTCCTAC
CACAATTCGGCCGTCACAGTCCGCATCAAACGCTGTCTGGAAATTGAGCC
AGGGGTATTCGACCGGGAGGTGGACCTGTCGGTCATGGGTCACGTCTTCT
GTACGGCTACGAGCAGCCTCAGCGCCAGGACGCCGGAGTGCGCACATCTG
CTGCGGGAGAAGAGCGTTGGCCTTGGTCAGCTGTTTCGACATCTCAGAGT
GTATCCAACCTTCCGGTTGTTGGACGTAGGAAGGACCGAGGTGGAGGATG
GCGAGGAGAGAGACGTCGAGGGGCTGAGAGAACGTGAGGGGGGCGGGGGG
TTCTGGCGTGTGTATGAGCTTGACTGTCCCGGGATGATCAACTGTAGAAT
TCTTGAGAGATTTTCGAGCAACACCTTCCAATTTCGTGCATAG
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Coding sequence (CDS) from alignment at CM002466.1:473335..474177-

>rna5645 ID=rna5645|Name=rna5645|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002466.1:473335..474177- (Nannochloropsis gaditana)
ATGTCTCCTTTTCTTGGAAAGAACATTTTTGTGTTGGCCTTGGCGTTCCA
TGTTCTCCTTTGTCAGGCGTATGTAGCCACGGATAACATAGCAAGGGGAA
TCAGTGCCATAAGTCAGCTATATAAGGCCAAAATAGATGATATGTCCATA
TGCCGACACGTACACTTGTCCCTGAGGCCCACACCACGAAAGTCGCGGCT
CCACTTGCAAGATCAGACTACTCGTCACGACACTGACGCATGCTCGCCAA
AACGGGACGCAGCACTTGAGCGCCAAAGCACCGCGTTTGAGCCCCTGAAA
GAAACAGCAATGTACGGCAATTTTCGTTCGGGGATATCAGAGCGCGTGGG
GTCCAAGGACGTGGAAATTCGATTGCCGGAGTCATTCAGTCCGCTCGAGC
GAGTGGCACTGTCCGCGGAGGGCGACTTGCAACGTATTATCAGCTCCTAC
CACAATTCGGCCGTCACAGTCCGCATCAAACGCTGTCTGGAAATTGAGCC
AGGGGTATTCGACCGGGAGGTGGACCTGTCGGTCATGGGTCACGTCTTCT
GTACGGCTACGAGCAGCCTCAGCGCCAGGACGCCGGAGTGCGCACATCTG
CTGCGGGAGAAGAGCGTTGGCCTTGGTCAGCTGTTTCGACATCTCAGAGT
GTATCCAACCTTCCGGTTGTTGGACGTAGGAAGGACCGAGGTGGAGGATG
GCGAGGAGAGAGACGTCGAGGGGCTGAGAGAACGTGAGGGGGGCGGGGGG
TTCTGGCGTGTGTATGAGCTTGACTGTCCCGGGATGATCAACTGTAGAAT
TCTTGAGAGATTTTCGAGCAACACCTTCCAATTTCGTGCATAG
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Synonyms
Publications