EWM25025.1, cds5630 (CDS) Nannochloropsis gaditana

Overview
NameEWM25025.1
Unique Namecds5630
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:473335..474177 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25025.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g21.2084.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:473335..474177 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028978Chorismate_lyase_/UTRA_dom
Homology
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|585106661|gb|EWM25025.1| (hypothetical protein Naga_100049g21 [Nannochloropsis gaditana])

HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MSPFLGKNIFVLALAFHVLLCQAYVATDNIARGISAISQLYKAKIDDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFRA 280
            MSPFLGKNIFVLALAFHVLLCQAYVATDNIARGISAISQLYKAKIDDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFRA
Sbjct:    1 MSPFLGKNIFVLALAFHVLLCQAYVATDNIARGISAISQLYKAKIDDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFRA 280          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|553192273|ref|XP_005855542.1| (hypothetical protein NGA_2037520, partial [Nannochloropsis gaditana CCMP526] >gi|422293518|gb|EKU20818.1| hypothetical protein NGA_2037520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 405.601 bits (1041), Expect = 1.128e-141
Identity = 197/199 (98.99%), Postives = 199/199 (100.00%), Query Frame = 0
Query:   12 LALAFHVLLCQAYVATDNIARGISAISQLYKAKIDDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQ 210
            +ALAFHVLLCQAYVATDNIARGISAISQLYKAK+DDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQ
Sbjct:    1 MALAFHVLLCQAYVATDNIARGISAISQLYKAKVDDMSICRHVHLSLRPTPRKSRLHLQDQTTRHDTDACSPKRDAALERQSTAFEPLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQ 199          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|1001617984|gb|KXS21723.1| (hypothetical protein M427DRAFT_130446 [Gonapodya prolifera JEL478])

HSP 1 Score: 115.546 bits (288), Expect = 7.139e-28
Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 0
Query:  119 KDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIE--------PG----------VFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQF 278
            ++  + LP  FSPLER+ L+A G++QRI+S+Y+NS V+V I R  +I+        PG          VFDREV +  +G V C A S++     EC  L+ E+ VG+GQLFR+L V P+F LL+ GR+                   G FWR Y L   G + C I E F    F F
Sbjct:   32 RETSLTLPPGFSPLERILLTANGNVQRILSAYYNSPVSVVIVRNRKIDGASNHVPPPGITSKPKNALAVFDREVRIECLGQVCCKAVSTVKILNDECLRLVDEQKVGIGQLFRYLNVLPSFALLNCGRST------------------GQFWRDYALTSEG-VRCEIREEFPDGVFNF 190          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|470517360|ref|XP_004353197.1| (hypothetical protein ACA1_073030 [Acanthamoeba castellanii str. Neff] >gi|440802740|gb|ELR23669.1| hypothetical protein ACA1_073030 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 112.849 bits (281), Expect = 8.446e-27
Identity = 67/209 (32.06%), Postives = 108/209 (51.67%), Query Frame = 0
Query:   77 DTDACSPKRDAALERQSTAFEPLKETAMYGNFR-----SGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEI-EPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFR 279
            D+    P +   +E     F P   T  +G  +     +   + +  +++   LP  F+ LER+ LSA G+LQR++S+Y+NS V+V I +   + +  +F+REV+L+  G  FC A S+++ +  E   L+ E+ VG+GQLF HLR+ P+F LL  GR+                 GG   WR Y L+   ++ C I E F ++ F  R
Sbjct:   14 DSPTTRPNKVPRMENNGGPFSP--ATTGFGGEQIERKPNHFGDILAPREITTVLPAGFTGLERIVLSANGNLQRLMSAYYNSPVSVEIIKNDRVGQTSIFEREVNLTCFGKAFCNAKSTVTIKKEEHLRLVLEEKVGIGQLFFHLRLLPSFVLLQAGRS-----------------GGVSLWREYRLEADSIV-CEIREEFVADLFDLR 202          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|929761923|ref|XP_014155942.1| (hypothetical protein SARC_05677 [Sphaeroforma arctica JP610] >gi|906952519|gb|KNC82040.1| hypothetical protein SARC_05677 [Sphaeroforma arctica JP610])

HSP 1 Score: 113.62 bits (283), Expect = 1.003e-26
Identity = 77/212 (36.32%), Postives = 100/212 (47.17%), Query Frame = 0
Query:   71 DQTTRHDTDACSPK---RDAALERQSTAFE--PLKETAMYGNFRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRC-LEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTF 276
            D  T +D D  +     + A    +ST     P   TA        + + +G +     LP  F+ LER+ L+A G LQRIISSY+N+ VTV+I+      + G +DREV+L +   VFC ATS +     E   L+    +GLGQLFRHL + P F LL VGR                    GG  R Y L  PG I CRI E F    F
Sbjct:   35 DSHTENDADTTTSTNGDQSAEYRMESTPLHTPPANATATALKEAPHLGDLMGWRTTFTELPGQFTGLERIVLTANGTLQRIISSYYNAEVTVKIRHNRPRTDQGWYDREVELLIFDQVFCIATSEIHLDRKEYVDLVEINRIGLGQLFRHLNLLPFFHLLKVGRNP-----------------EGGLKRTYTLQSPG-ITCRITETFPRKLF 228          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|1026964139|ref|XP_016610228.1| (hypothetical protein SPPG_02677 [Spizellomyces punctatus DAOM BR117] >gi|907096660|gb|KND02189.1| hypothetical protein SPPG_02677 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 112.849 bits (281), Expect = 1.145e-26
Identity = 64/174 (36.78%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  116 VGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEP---------GVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFRA 280
            + S++  + LP  FSP+ER+ L+A G++QRI+S+Y+NS V+V I     I            VF REV+L  +  + C A S+++   PE   L+ E+ VG+GQLFR+L + P F LL VGRT                     FWR Y+L   G +NCRI E F    F  + 
Sbjct:   37 MSSRETTLILPTDFSPMERILLTANGNVQRILSAYYNSTVSVDIIHNELINEESASNAETESVFRREVNLRCLNQICCNAKSTVTITDPEYLRLILEQQVGIGQLFRYLNILPEFELLQVGRT------------------VNSFWREYDLRSNG-VNCRIREEFPLGVFNLQG 191          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|224000021|ref|XP_002289683.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974891|gb|EED93220.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.775 bits (286), Expect = 2.398e-26
Identity = 73/199 (36.68%), Postives = 102/199 (51.26%), Query Frame = 0
Query:  109 RSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCL--------EIEPG---------------------VFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGE-ERDV------EGLREREGGGGFWRVYELDCPGMINCRILERF 271
            + G+  + G  ++  R   +F+P+ER+AL+A G+LQRI SS++++ V V +  C         EI+ G                     V+DR V L V    FC ATS +  R+ EC  L+ + +VGLGQLFR+L   PTF LLD GRTE    E E+ +      + L+  E  GG WR YEL C   + C I E F
Sbjct:  118 KDGLVTKEGG-ELNARFNCNFTPMERIALTANGNLQRIFSSFYDAPVHVHVDSCARRELSARDEIQIGFTDANGFSTEKYRTHIDEGDAVWDRVVHLYVHDKTFCRATSVIHVRSHECIRLIEDGTVGLGQLFRYLNKLPTFSLLDAGRTEYAHAESEQSISKNDSKQALQPHEFEGGMWRTYELQCE-ELTCLIHEEF 314          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|551555301|ref|XP_005764847.1| (hypothetical protein EMIHUDRAFT_422141 [Emiliania huxleyi CCMP1516] >gi|485614636|gb|EOD12418.1| hypothetical protein EMIHUDRAFT_422141 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 102.449 bits (254), Expect = 4.068e-23
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 0
Query:  123 IRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTFQFRA 280
            + LP  FSPL+R+ L+A G+++RI+SS++   +TV +    +  P V+DR+V + V G  F  A S++    P    ++  +   LG +FR + V PTF L  VGR              R+  G G FWRVY L   GM  C I E F+ +TF+ R+
Sbjct:    8 VTLPNGFSPLQRLLLTANGNVERIVSSFYYEPLTVLVNLNHKRSPCVYDRQVTMLVRGEPFLHAKSTIYLTDPAWEEMVERRGTPLGAVFRVMGVLPTFHLRSVGRG-------------RDSSGSGFFWRVYTLASQGM-TCEITETFADDTFEKRS 151          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|1210523686|dbj|GAX17646.1| (hypothetical protein FisN_18Lu312 [Fistulifera solaris])

HSP 1 Score: 98.2117 bits (243), Expect = 1.357e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 0
Query:  130 SPLERVALSAEGDLQRIISSYHNSAVTVRIKRCL--EIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERF 271
            +PL+R+ L+A G+LQR+I+SY+++ V+VR++ C   +  P V+DR V L V+G  FC A S ++ +   C  L+    VGLGQLFR+L V P F L + G   +                 GG WR Y L C  +  C+I E F
Sbjct:   32 NPLDRLVLTANGNLQRLIASYYDADVSVRVEGCSFRQENPRVWDRTVYLEVLGVEFCRAESEVTIQQDSCQELVASGQVGLGQLFRYLNVLPMFFLREAGVDPIT----------------GGIWREYTLQCDAL-TCQIREEF 158          
BLAST of EWM25025.1 vs. NCBI_GenBank
Match: gi|1183325311|gb|ORX55081.1| (hypothetical protein DM01DRAFT_1407119 [Hesseltinella vesiculosa])

HSP 1 Score: 98.5969 bits (244), Expect = 1.729e-21
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = 0
Query:  112 ISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHN--SAVTVRIKRCLEIEPGV----FDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGGGGFWRVYELDCPGMINCRILERFSSNTF 276
             +E + SK+V ++LPE+FSP++R+ L A G+LQR++S+Y N  S V +   R +  +  +    F+R+V +     +   A S L  + P    L+ +   GLGQ+F H +  P F LL VGR               + + G  FWR Y L  P +++C I E+F    F
Sbjct:   20 FTEELSSKNVFVQLPEAFSPVQRMLLQASGNLQRLVSAYFNVPSRVEIIYNRPMYEQSNLPNRHFERKVQIYFAEKMVIEADSILYVKDPNVLDLIEKHKYGLGQIFAHTKRTPDFMLLAVGR--------------HDNKAGSSFWRDYSLTIPDVLDCFIREKFVEGLF 176          
The following BLAST results are available for this feature:
BLAST of EWM25025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106661|gb|EWM25025.1|0.000e+0100.00hypothetical protein Naga_100049g21 [Nannochlorops... [more]
gi|553192273|ref|XP_005855542.1|1.128e-14198.99hypothetical protein NGA_2037520, partial [Nannoch... [more]
gi|1001617984|gb|KXS21723.1|7.139e-2838.20hypothetical protein M427DRAFT_130446 [Gonapodya p... [more]
gi|470517360|ref|XP_004353197.1|8.446e-2732.06hypothetical protein ACA1_073030 [Acanthamoeba cas... [more]
gi|929761923|ref|XP_014155942.1|1.003e-2636.32hypothetical protein SARC_05677 [Sphaeroforma arct... [more]
gi|1026964139|ref|XP_016610228.1|1.145e-2636.78hypothetical protein SPPG_02677 [Spizellomyces pun... [more]
gi|224000021|ref|XP_002289683.1|2.398e-2636.68predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551555301|ref|XP_005764847.1|4.068e-2336.08hypothetical protein EMIHUDRAFT_422141 [Emiliania ... [more]
gi|1210523686|dbj|GAX17646.1|1.357e-2138.19hypothetical protein FisN_18Lu312 [Fistulifera sol... [more]
gi|1183325311|gb|ORX55081.1|1.729e-2132.75hypothetical protein DM01DRAFT_1407119 [Hesseltine... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5645rna5645Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications