rna5643, rna5643 (mRNA) Nannochloropsis gaditana

Overview
Namerna5643
Unique Namerna5643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length303
Alignment locationCM002466.1:470546..471686 -

Link to JBrowse

Properties
Property NameValue
Productpolyphosphate synthetase vtc4
Orig transcript idgnl|cribi|Naga_100049g23.2118.mrna
Orig protein idgnl|cribi|Naga_100049g23.2118
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:470546..471686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g23gene5453Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5643rna5643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25059.1cds5628Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5643 ID=rna5643|Name=rna5643|organism=Nannochloropsis gaditana|type=mRNA|length=303bp
ATGCAGGCGCCGTGGGGTAATCCCCGAGGCGGCCGTGGGAACGCCAGAGA
CTTCGCGAGAGCGGGACGTAGACAGGATGATATGAGGGGAGCAGATGGAG
ATGAGGCATCCAAAGGGAAGAAAATTGAAAAGCTGAAACGAAAAGGCGAC
CACGAGATTTGTCGCCCCTTGAAAACGTCAGAAAGCCTCTGTCCGAAAAC
CATGACGATGGATAGACTTGACGAGTCCCTGCATTGCCACGCGATCCTTC
CGGCCTTGGCTGGCCAAGAAGCTGATCTTCATGAATGCCTCCAGCGAAAA
TAA
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protein sequence of rna5643

>rna5643-protein ID=rna5643-protein|Name=rna5643|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTS
APAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKV
FFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFC
VYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI
YTPSGSGGGSEGGRVPINGGFEG
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mRNA from alignment at CM002466.1:470546..471686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5643 ID=rna5643|Name=rna5643|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp|location=Sequence derived from alignment at CM002466.1:470546..471686- (Nannochloropsis gaditana)
ATGCCAACAAGAAATGGGACTCAGGAGGAAAAACAGCCATTGCGATCTGG
AACAGAAATAAGACCAATATACTCTATTCCCAATTCTGGGGACCTTGGGA
GCGGATCAGATGTAAGTGATTGAGCTGTGAAGGTGATGGAAGAGAGGAAG
AGCACTACGACTAATACGAGACCCCGTGCACAGGCTCATCGCAACGGAGA
CCGACCCGTGATCACAACGTCCGCTCCAGCTCCACACGCACACTGTAAGT
TGAAAGGATGATAGAAGGATGGTGAAACCTGACGCATATCGTATTGTCCG
ACGTGCGGTATATCTCTCATCTTCCGATTTGCCGCTTTAGTACTTATCCA
TGTGTGATGTGATTTCATGCTTGTTTCACCCCAACCACGACAAGTGAATG
CCAATGCCTCTTACTTTCCTTCCACAGCACTTTTTGGAAACTGGTGGCCG
TTCTCAAAGGGAAGATTTTCCGGAGACCATGACTCACTCGGAAGCCCCTC
CGCTTCCGGCGCACGTAAAGTCCGTAAAGCGCCCGTCAAAGTGGAGCCCA
AGGTAGGTGCTTGCGTGAATGTACGTGCATGAATGGCTCCTCCGTCCCCC
TGGTGATGCCCTGCGATCCCCTTCCATGGACAAGAGCGAGGTGCCCGCGC
GACCTCACCTCTGTCTCGGCCCTGCCAGGTCTTCTTTGCGAACGAGAGGA
CGTTCTTGGCCTGGCTCAACATGTCGGTGACGCTTTCCTCGATCTCTGTG
GCCATCTTAGCCTTCGCGGACCACAACGAGTTCTCACAAGTGTACGGCTT
TATCATCCTCCCGGTGGCCATCTGTTTCTGTGTCTACGCGATGCGGACGT
ACATGAAAAGGTGAGGGTGGCGGGGCGGGGACTGACCTTCCTTCGTTTCC
TCTCCAAAGGGTTGCCTCACACTCACGCGGCCCCTCCATTTCCCTCAGGT
CATCCATGCTTCGGAACCGCATGCCAGGCCCTTACGAGGATCGACTCGGA
CCCATCGTTCTGACCGTGCTGCTCGTTCTCACCATTCTCATCAACACGCT
TCTGAAAATTATCGACATCTACACGCCGTCTGGAAGCGGAGGAGGGAGCG
AGGGAGGGAGGGTGCCGATCAATGGTGGATTCGAAGGCTAA
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Coding sequence (CDS) from alignment at CM002466.1:470546..471686-

>rna5643 ID=rna5643|Name=rna5643|organism=Nannochloropsis gaditana|type=CDS|length=3360bp|location=Sequence derived from alignment at CM002466.1:470546..471686- (Nannochloropsis gaditana)
GTCATCCATGCTTCGGAACCGCATGCCAGGCCCTTACGAGGATCGACTCG
GACCCATCGTTCTGACCGTGCTGCTCGTTCTCACCATTCTCATCAACACG
CTTCTGAAAATTATCGACATCTACACGCCGTCTGGAAGCGGAGGAGGGAG
CGAGGGAGGGAGGGTGCCGATCAATGGTGGATTCGAAGGCTAAGTCTTCT
TTGCGAACGAGAGGACGTTCTTGGCCTGGCTCAACATGTCGGTGACGCTT
TCCTCGATCTCTGTGGCCATCTTAGCCTTCGCGGACCACAACGAGTTCTC
ACAAGTGTACGGCTTTATCATCCTCCCGGTGGCCATCTGTTTCTGTGTCT
ACGCGATGCGGACGTACATGAAAAGCACTTTTTGGAAACTGGTGGCCGTT
CTCAAAGGGAAGATTTTCCGGAGACCATGACTCACTCGGAAGCCCCTCCG
CTTCCGGCGCACGTAAAGTCCGTAAAGCGCCCGTCAAAGTGGAGCCCAAG
GCTCATCGCAACGGAGACCGACCCGTGATCACAACGTCCGCTCCAGCTCC
ACACGCACACTATGCCAACAAGAAATGGGACTCAGGAGGAAAAACAGCCA
TTGCGATCTGGAACAGAAATAAGACCAATATACTCTATTCCCAATTCTGG
GGACCTTGGGAGCGGATCAGATGTCATCCATGCTTCGGAACCGCATGCCA
GGCCCTTACGAGGATCGACTCGGACCCATCGTTCTGACCGTGCTGCTCGT
TCTCACCATTCTCATCAACACGCTTCTGAAAATTATCGACATCTACACGC
CGTCTGGAAGCGGAGGAGGGAGCGAGGGAGGGAGGGTGCCGATCAATGGT
GGATTCGAAGGCTAAGTCTTCTTTGCGAACGAGAGGACGTTCTTGGCCTG
GCTCAACATGTCGGTGACGCTTTCCTCGATCTCTGTGGCCATCTTAGCCT
TCGCGGACCACAACGAGTTCTCACAAGTGTACGGCTTTATCATCCTCCCG
GTGGCCATCTGTTTCTGTGTCTACGCGATGCGGACGTACATGAAAAGCAC
TTTTTGGAAACTGGTGGCCGTTCTCAAAGGGAAGATTTTCCGGAGACCAT
GACTCACTCGGAAGCCCCTCCGCTTCCGGCGCACGTAAAGTCCGTAAAGC
GCCCGTCAAAGTGGAGCCCAAGGCTCATCGCAACGGAGACCGACCCGTGA
TCACAACGTCCGCTCCAGCTCCACACGCACACTATGCCAACAAGAAATGG
GACTCAGGAGGAAAAACAGCCATTGCGATCTGGAACAGAAATAAGACCAA
TATACTCTATTCCCAATTCTGGGGACCTTGGGAGCGGATCAGATGTCATC
CATGCTTCGGAACCGCATGCCAGGCCCTTACGAGGATCGACTCGGACCCA
TCGTTCTGACCGTGCTGCTCGTTCTCACCATTCTCATCAACACGCTTCTG
AAAATTATCGACATCTACACGCCGTCTGGAAGCGGAGGAGGGAGCGAGGG
AGGGAGGGTGCCGATCAATGGTGGATTCGAAGGCTAAGTCTTCTTTGCGA
ACGAGAGGACGTTCTTGGCCTGGCTCAACATGTCGGTGACGCTTTCCTCG
ATCTCTGTGGCCATCTTAGCCTTCGCGGACCACAACGAGTTCTCACAAGT
GTACGGCTTTATCATCCTCCCGGTGGCCATCTGTTTCTGTGTCTACGCGA
TGCGGACGTACATGAAAAGCACTTTTTGGAAACTGGTGGCCGTTCTCAAA
GGGAAGATTTTCCGGAGACCATGACTCACTCGGAAGCCCCTCCGCTTCCG
GCGCACGTAAAGTCCGTAAAGCGCCCGTCAAAGTGGAGCCCAAGGCTCAT
CGCAACGGAGACCGACCCGTGATCACAACGTCCGCTCCAGCTCCACACGC
ACACTATGCCAACAAGAAATGGGACTCAGGAGGAAAAACAGCCATTGCGA
TCTGGAACAGAAATAAGACCAATATACTCTATTCCCAATTCTGGGGACCT
TGGGAGCGGATCAGATGTCATCCATGCTTCGGAACCGCATGCCAGGCCCT
TACGAGGATCGACTCGGACCCATCGTTCTGACCGTGCTGCTCGTTCTCAC
CATTCTCATCAACACGCTTCTGAAAATTATCGACATCTACACGCCGTCTG
GAAGCGGAGGAGGGAGCGAGGGAGGGAGGGTGCCGATCAATGGTGGATTC
GAAGGCTAAGTCTTCTTTGCGAACGAGAGGACGTTCTTGGCCTGGCTCAA
CATGTCGGTGACGCTTTCCTCGATCTCTGTGGCCATCTTAGCCTTCGCGG
ACCACAACGAGTTCTCACAAGTGTACGGCTTTATCATCCTCCCGGTGGCC
ATCTGTTTCTGTGTCTACGCGATGCGGACGTACATGAAAAGCACTTTTTG
GAAACTGGTGGCCGTTCTCAAAGGGAAGATTTTCCGGAGACCATGACTCA
CTCGGAAGCCCCTCCGCTTCCGGCGCACGTAAAGTCCGTAAAGCGCCCGT
CAAAGTGGAGCCCAAGGCTCATCGCAACGGAGACCGACCCGTGATCACAA
CGTCCGCTCCAGCTCCACACGCACACTATGCCAACAAGAAATGGGACTCA
GGAGGAAAAACAGCCATTGCGATCTGGAACAGAAATAAGACCAATATACT
CTATTCCCAATTCTGGGGACCTTGGGAGCGGATCAGATGTCATCCATGCT
TCGGAACCGCATGCCAGGCCCTTACGAGGATCGACTCGGACCCATCGTTC
TGACCGTGCTGCTCGTTCTCACCATTCTCATCAACACGCTTCTGAAAATT
ATCGACATCTACACGCCGTCTGGAAGCGGAGGAGGGAGCGAGGGAGGGAG
GGTGCCGATCAATGGTGGATTCGAAGGCTAAGTCTTCTTTGCGAACGAGA
GGACGTTCTTGGCCTGGCTCAACATGTCGGTGACGCTTTCCTCGATCTCT
GTGGCCATCTTAGCCTTCGCGGACCACAACGAGTTCTCACAAGTGTACGG
CTTTATCATCCTCCCGGTGGCCATCTGTTTCTGTGTCTACGCGATGCGGA
CGTACATGAAAAGCACTTTTTGGAAACTGGTGGCCGTTCTCAAAGGGAAG
ATTTTCCGGAGACCATGACTCACTCGGAAGCCCCTCCGCTTCCGGCGCAC
GTAAAGTCCGTAAAGCGCCCGTCAAAGTGGAGCCCAAGGCTCATCGCAAC
GGAGACCGACCCGTGATCACAACGTCCGCTCCAGCTCCACACGCACACTA
TGCCAACAAGAAATGGGACTCAGGAGGAAAAACAGCCATTGCGATCTGGA
ACAGAAATAAGACCAATATACTCTATTCCCAATTCTGGGGACCTTGGGAG
CGGATCAGAT
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Synonyms
Publications