EWM25059.1, cds5628 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|585106695|gb|EWM25059.1| (polyphosphate synthetase vtc4 [Nannochloropsis gaditana]) HSP 1 Score: 457.988 bits (1177), Expect = 4.632e-163 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG 223
MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG
Sbjct: 1 MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG 223
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|585104498|gb|EWM23453.1| (protein of unknown function DUF202 [Nannochloropsis gaditana]) HSP 1 Score: 199.134 bits (505), Expect = 2.708e-60 Identity = 104/200 (52.00%), Postives = 129/200 (64.50%), Query Frame = 0
Query: 9 EEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPH--------AHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI 200
E L+S E +P+Y +P + + R + +PH + WPF+ D G K+RKAPVKVEPKVFFANERTFLAWLNMSVTL+SISVAILAFADHNEFSQ+YGF +LPVA+ F +YA+ TY +RS MLRNRMPGPYEDR+GP+VLT+LL L+I +N +LK+IDI
Sbjct: 52 ERTSLLKSSAEPKPVYVVPRTNSI----------SRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQ----DTTRYG--------KIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1210514299|dbj|GAX26629.1| (hypothetical protein FisN_2Hh439 [Fistulifera solaris]) HSP 1 Score: 147.132 bits (370), Expect = 2.085e-40 Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 0
Query: 88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNE--FSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYT 202
K+RKAP+K+EPKVFFANERTFLAW+++SV L+ S+AILA AD +E Q+YG ++LPVAI F VY+M Y +R++M+RNR PGPYED +GP VL V+L+++IL LK+ I T
Sbjct: 114 KLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSIAT 230
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1210525322|dbj|GAX15840.1| (hypothetical protein FisN_2Lh439 [Fistulifera solaris]) HSP 1 Score: 147.132 bits (370), Expect = 2.452e-40 Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 0
Query: 88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNE--FSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYT 202
K+RKAP+K+EPKVFFANERTFLAW+++SV L+ S+AILA AD +E Q+YG ++LPVAI F VY+M Y +R++M+RNR PGPYED +GP VL V+L+++IL LK+ I T
Sbjct: 114 KLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSIAT 230
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1072235234|gb|OEU19963.1| (hypothetical protein FRACYDRAFT_181535 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 135.576 bits (340), Expect = 2.796e-37 Identity = 64/114 (56.14%), Postives = 89/114 (78.07%), Query Frame = 0
Query: 88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEF-SQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI 200
K R AP+K+EPKVFFANERTFLAW+++SV L+ SVAILA +D+++ Q+YG I+LPVAI F VY+M Y+KRS M+RN++PGPY+D +GP VL ++L+ +I +K+I I
Sbjct: 3 KPRAAPIKIEPKVFFANERTFLAWMHISVILAGASVAILALSDYDDIGKQLYGLIMLPVAIAFLVYSMFQYVKRSYMIRNKLPGPYDDTVGPTVLGIMLMASITAQFAIKLIAI 116
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|219126180|ref|XP_002183341.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405097|gb|EEC45041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 135.191 bits (339), Expect = 3.058e-37 Identity = 63/106 (59.43%), Postives = 87/106 (82.08%), Query Frame = 0
Query: 93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFA-DHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
PVK+EPKVFFANERTFLAW+++SV L+ S+AILAF D+N FSQ+YG I+LPVAI F VY+M Y +R++M+R+R PGPYED +GP+VL ++L+++I+ LK+
Sbjct: 1 PVKIEPKVFFANERTFLAWMHLSVVLAGASIAILAFTEDNNPFSQLYGVILLPVAISFIVYSMYQYARRANMIRHRHPGPYEDTVGPVVLGIMLMVSIVAQFSLKL 106
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|224001320|ref|XP_002290332.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973754|gb|EED92084.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 122.865 bits (307), Expect = 2.238e-32 Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = 0
Query: 93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFS--QVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
PVKVEPKVFFANERTFLAWL++SV L+ SVAI+AF+D + Q+YG I+LPV+I F +YAM Y +R++M+R + PGPY D GP VLTV+L+L+I+ +K+
Sbjct: 2 PVKVEPKVFFANERTFLAWLHVSVILAGASVAIVAFSDARAATPDQLYGIILLPVSIAFILYAMIQYSRRATMIRRKSPGPYVDIAGPTVLTVILMLSIVAQFTIKL 108
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|224011539|ref|XP_002295544.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209583575|gb|ACI64261.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 112.079 bits (279), Expect = 3.290e-28 Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0
Query: 93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHN--EFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
PVKV+PKVFFANERTFLAWL++SV L+ SVAI+AF+D + Q+YG I+LPV+I F +Y +Y +R+SM+R + PGPY D GP VLTV+L+ +I+ +K+
Sbjct: 3 PVKVDPKVFFANERTFLAWLHVSVILAGASVAIVAFSDSHAPNSDQLYGVILLPVSIAFILY---SYSRRASMIRRKAPGPYVDIAGPTVLTVILMCSIVAQFSIKL 106
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|343426476|emb|CBQ70006.1| (probable VTC1-protein controls Sec18p/NSF-dependent priming of SNAREs and HOPS [Sporisorium reilianum SRZ2]) HSP 1 Score: 109.768 bits (273), Expect = 3.390e-27 Identity = 53/104 (50.96%), Postives = 77/104 (74.04%), Query Frame = 0
Query: 93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLK 196
PV+VEPKVFFANERTFL+WLN +VTLS+++ +L F D + ++ + VA+ VYA+ TY R+S +RNR GPY+DRLGP VL+V+L++ +L+N +L+
Sbjct: 18 PVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KIGRISAAMFSFVAMAIMVYALLTYHWRASAIRNRGSGPYDDRLGPTVLSVMLLIAVLVNFILR 119
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1003331405|emb|CDU22414.1| (probable VTC1-protein controls Sec18p/NSF-dependent priming of SNAREs and HOPS [Sporisorium scitamineum]) HSP 1 Score: 109.768 bits (273), Expect = 3.985e-27 Identity = 53/104 (50.96%), Postives = 77/104 (74.04%), Query Frame = 0
Query: 93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLK 196
PV+VEPKVFFANERTFL+WLN +VTLS+++ +L F D + ++ + VA+ VYA+ TY R+S +RNR GPY+DRLGP VL+V+L++ +L+N +L+
Sbjct: 18 PVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KIGRISAAMFSFVAMAIMVYALLTYHWRASAIRNRGSGPYDDRLGPTVLSVMLLIAVLVNFVLR 119 The following BLAST results are available for this feature:
BLAST of EWM25059.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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