EWM25059.1, cds5628 (CDS) Nannochloropsis gaditana

Overview
NameEWM25059.1
Unique Namecds5628
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:471576..471686 -
Alignment locationCM002466.1:471443..471503 -
Alignment locationCM002466.1:471135..471259 -
Alignment locationCM002466.1:470827..471008 -
Alignment locationCM002466.1:470546..470738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25059.1
Productpolyphosphate synthetase vtc4
Orig transcript idgnl|cribi|Naga_100049g23.2118.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:471576..471686 -
CM002466.1supercontigCM002466.1:471443..471503 -
CM002466.1supercontigCM002466.1:471135..471259 -
CM002466.1supercontigCM002466.1:470827..471008 -
CM002466.1supercontigCM002466.1:470546..470738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003807DUF202
Homology
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|585106695|gb|EWM25059.1| (polyphosphate synthetase vtc4 [Nannochloropsis gaditana])

HSP 1 Score: 457.988 bits (1177), Expect = 4.632e-163
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG 223
            MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG
Sbjct:    1 MPTRNGTQEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPHAHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYTPSGSGGGSEGGRVPINGGFEG 223          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|585104498|gb|EWM23453.1| (protein of unknown function DUF202 [Nannochloropsis gaditana])

HSP 1 Score: 199.134 bits (505), Expect = 2.708e-60
Identity = 104/200 (52.00%), Postives = 129/200 (64.50%), Query Frame = 0
Query:    9 EEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPH--------AHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI 200
            E    L+S  E +P+Y +P +  +           R  +     +PH        +       WPF+      D    G        K+RKAPVKVEPKVFFANERTFLAWLNMSVTL+SISVAILAFADHNEFSQ+YGF +LPVA+ F +YA+ TY +RS MLRNRMPGPYEDR+GP+VLT+LL L+I +N +LK+IDI
Sbjct:   52 ERTSLLKSSAEPKPVYVVPRTNSI----------SRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQ----DTTRYG--------KIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1210514299|dbj|GAX26629.1| (hypothetical protein FisN_2Hh439 [Fistulifera solaris])

HSP 1 Score: 147.132 bits (370), Expect = 2.085e-40
Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 0
Query:   88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNE--FSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYT 202
            K+RKAP+K+EPKVFFANERTFLAW+++SV L+  S+AILA AD +E    Q+YG ++LPVAI F VY+M  Y +R++M+RNR PGPYED +GP VL V+L+++IL    LK+  I T
Sbjct:  114 KLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSIAT 230          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1210525322|dbj|GAX15840.1| (hypothetical protein FisN_2Lh439 [Fistulifera solaris])

HSP 1 Score: 147.132 bits (370), Expect = 2.452e-40
Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 0
Query:   88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNE--FSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDIYT 202
            K+RKAP+K+EPKVFFANERTFLAW+++SV L+  S+AILA AD +E    Q+YG ++LPVAI F VY+M  Y +R++M+RNR PGPYED +GP VL V+L+++IL    LK+  I T
Sbjct:  114 KLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSIAT 230          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1072235234|gb|OEU19963.1| (hypothetical protein FRACYDRAFT_181535 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 135.576 bits (340), Expect = 2.796e-37
Identity = 64/114 (56.14%), Postives = 89/114 (78.07%), Query Frame = 0
Query:   88 KVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEF-SQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI 200
            K R AP+K+EPKVFFANERTFLAW+++SV L+  SVAILA +D+++   Q+YG I+LPVAI F VY+M  Y+KRS M+RN++PGPY+D +GP VL ++L+ +I     +K+I I
Sbjct:    3 KPRAAPIKIEPKVFFANERTFLAWMHISVILAGASVAILALSDYDDIGKQLYGLIMLPVAIAFLVYSMFQYVKRSYMIRNKLPGPYDDTVGPTVLGIMLMASITAQFAIKLIAI 116          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|219126180|ref|XP_002183341.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405097|gb|EEC45041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 135.191 bits (339), Expect = 3.058e-37
Identity = 63/106 (59.43%), Postives = 87/106 (82.08%), Query Frame = 0
Query:   93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFA-DHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
            PVK+EPKVFFANERTFLAW+++SV L+  S+AILAF  D+N FSQ+YG I+LPVAI F VY+M  Y +R++M+R+R PGPYED +GP+VL ++L+++I+    LK+
Sbjct:    1 PVKIEPKVFFANERTFLAWMHLSVVLAGASIAILAFTEDNNPFSQLYGVILLPVAISFIVYSMYQYARRANMIRHRHPGPYEDTVGPVVLGIMLMVSIVAQFSLKL 106          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|224001320|ref|XP_002290332.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973754|gb|EED92084.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 122.865 bits (307), Expect = 2.238e-32
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = 0
Query:   93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFS--QVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
            PVKVEPKVFFANERTFLAWL++SV L+  SVAI+AF+D    +  Q+YG I+LPV+I F +YAM  Y +R++M+R + PGPY D  GP VLTV+L+L+I+    +K+
Sbjct:    2 PVKVEPKVFFANERTFLAWLHVSVILAGASVAIVAFSDARAATPDQLYGIILLPVSIAFILYAMIQYSRRATMIRRKSPGPYVDIAGPTVLTVILMLSIVAQFTIKL 108          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|224011539|ref|XP_002295544.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209583575|gb|ACI64261.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 112.079 bits (279), Expect = 3.290e-28
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0
Query:   93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHN--EFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKI 197
            PVKV+PKVFFANERTFLAWL++SV L+  SVAI+AF+D +     Q+YG I+LPV+I F +Y   +Y +R+SM+R + PGPY D  GP VLTV+L+ +I+    +K+
Sbjct:    3 PVKVDPKVFFANERTFLAWLHVSVILAGASVAIVAFSDSHAPNSDQLYGVILLPVSIAFILY---SYSRRASMIRRKAPGPYVDIAGPTVLTVILMCSIVAQFSIKL 106          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|343426476|emb|CBQ70006.1| (probable VTC1-protein controls Sec18p/NSF-dependent priming of SNAREs and HOPS [Sporisorium reilianum SRZ2])

HSP 1 Score: 109.768 bits (273), Expect = 3.390e-27
Identity = 53/104 (50.96%), Postives = 77/104 (74.04%), Query Frame = 0
Query:   93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLK 196
            PV+VEPKVFFANERTFL+WLN +VTLS+++  +L F D  +  ++   +   VA+   VYA+ TY  R+S +RNR  GPY+DRLGP VL+V+L++ +L+N +L+
Sbjct:   18 PVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KIGRISAAMFSFVAMAIMVYALLTYHWRASAIRNRGSGPYDDRLGPTVLSVMLLIAVLVNFILR 119          
BLAST of EWM25059.1 vs. NCBI_GenBank
Match: gi|1003331405|emb|CDU22414.1| (probable VTC1-protein controls Sec18p/NSF-dependent priming of SNAREs and HOPS [Sporisorium scitamineum])

HSP 1 Score: 109.768 bits (273), Expect = 3.985e-27
Identity = 53/104 (50.96%), Postives = 77/104 (74.04%), Query Frame = 0
Query:   93 PVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLK 196
            PV+VEPKVFFANERTFL+WLN +VTLS+++  +L F D  +  ++   +   VA+   VYA+ TY  R+S +RNR  GPY+DRLGP VL+V+L++ +L+N +L+
Sbjct:   18 PVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KIGRISAAMFSFVAMAIMVYALLTYHWRASAIRNRGSGPYDDRLGPTVLSVMLLIAVLVNFVLR 119          
The following BLAST results are available for this feature:
BLAST of EWM25059.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106695|gb|EWM25059.1|4.632e-163100.00polyphosphate synthetase vtc4 [Nannochloropsis gad... [more]
gi|585104498|gb|EWM23453.1|2.708e-6052.00protein of unknown function DUF202 [Nannochloropsi... [more]
gi|1210514299|dbj|GAX26629.1|2.085e-4058.12hypothetical protein FisN_2Hh439 [Fistulifera sola... [more]
gi|1210525322|dbj|GAX15840.1|2.452e-4058.12hypothetical protein FisN_2Lh439 [Fistulifera sola... [more]
gi|1072235234|gb|OEU19963.1|2.796e-3756.14hypothetical protein FRACYDRAFT_181535 [Fragilario... [more]
gi|219126180|ref|XP_002183341.1|3.058e-3759.43predicted protein, partial [Phaeodactylum tricornu... [more]
gi|224001320|ref|XP_002290332.1|2.238e-3257.01predicted protein, partial [Thalassiosira pseudona... [more]
gi|224011539|ref|XP_002295544.1|3.290e-2854.21predicted protein, partial [Thalassiosira pseudona... [more]
gi|343426476|emb|CBQ70006.1|3.390e-2750.96probable VTC1-protein controls Sec18p/NSF-dependen... [more]
gi|1003331405|emb|CDU22414.1|3.985e-2750.96probable VTC1-protein controls Sec18p/NSF-dependen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5643rna5643Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications