rna5642, rna5642 (mRNA) Nannochloropsis gaditana

Overview
Namerna5642
Unique Namerna5642
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length636
Alignment locationCM002466.1:470127..470513 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g24.2107.mrna
Orig protein idgnl|cribi|Naga_100049g24.2107
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:470127..470513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g24gene5452Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5642rna5642-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25048.1cds5627Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5642 ID=rna5642|Name=rna5642|organism=Nannochloropsis gaditana|type=mRNA|length=636bp
ATGCAGTACATGGATGTTTGTGAAAAGAGTCGGTGCCGAAACGGGAGTGG
ATGGTCTAAGTACGCTGTGTGTGAAGAGAGCTCGGGCCATGAGACAGCGT
GGGATCATTCTCTGTGGGGAGAGTTGGGGAGAAGGGAAGAAGGAGGCGTG
TGTACTGAACAACGCAAACAAAGCATCGCACACCTGCGCAGCCGCACAAC
GATTGAGTGGATGTACCAGGAACGGTGCAAGAGGCAGGTCATTTACCACA
AAAAACTGGGGTTGGAGGGGGAGGGAGGAACAGAAAGGGCGCGAAAAGAA
AGCACAGTGATGGAAATGGACTTAATGTATGGAATGCCTTGGGGAAGTAT
GCATTTGGGGAAGTATGCATTCGGCGGAGCAACTCGAGAAATTTTGAGCT
CAGGCTCTAGTTGTAGGAATTCATCGAAACCGGGCATCTATCAGGGATTC
ATACGGAGAAAGGGAAGGAGGAGGAGCGACGGGGCATATGCCTCCTGGAG
GTTCTGTCTCAGGTTCTGTGAGGTTCTGTCTCAAATCGGGATGGCCTCTG
CTTCAGGTTCAGTACGCGGTCTTGTCATCTTGAAATGTTTCCCAGCAGGG
GGCTGGGGCATACCATGTTGCATATTTTATCTTTGA
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protein sequence of rna5642

>rna5642-protein ID=rna5642-protein|Name=rna5642|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MQAPWGNPRGGRGNARDFARAGRRQDDMRGADGDEASKGKKIEKLKRKGD
HEICRPLKTSESLCPKTMTMDRLDESLHCHAILPALAGQEADLHECLQRK
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mRNA from alignment at CM002466.1:470127..470513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5642 ID=rna5642|Name=rna5642|organism=Nannochloropsis gaditana|type=mRNA|length=387bp|location=Sequence derived from alignment at CM002466.1:470127..470513- (Nannochloropsis gaditana)
ATGCAGGCGCCGTGGGGTAATCCCCGAGGCGGCCGTGGGAACGCCAGAGA
CTTCGCGAGAGCGGGACGTAGACAGGATGATAGTCGAGGCGCCAGAGACT
TTGCGAGAGCGGGACGTAGACAGGATGATAGTCGAGGCGCAGGGTGTGAT
GAGAAGAAAACATAAGTGAGGGGAGCAGATGGAGATGAGGCATCCAAAGG
GAAGAAAATTGAAAAGCTGAAACGAAAAGGCGACCACGAGATTTGTCGCC
CCTTGAAAACGTCAGAAAGCCTCTGTCCGAAAACCATGACGATGGATAGA
CTTGACGAGTCCCTGCATTGCCACGCGATCCTTCCGGCCTTGGCTGGCCA
AGAAGCTGATCTTCATGAATGCCTCCAGCGAAAATAA
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Coding sequence (CDS) from alignment at CM002466.1:470127..470513-

>rna5642 ID=rna5642|Name=rna5642|organism=Nannochloropsis gaditana|type=CDS|length=606bp|location=Sequence derived from alignment at CM002466.1:470127..470513- (Nannochloropsis gaditana)
TGAGGGGAGCAGATGGAGATGAGGCATCCAAAGGGAAGAAAATTGAAAAG
CTGAAACGAAAAGGCGACCACGAGATTTGTCGCCCCTTGAAAACGTCAGA
AAGCCTCTGTCCGAAAACCATGACGATGGATAGACTTGACGAGTCCCTGC
ATTGCCACGCGATCCTTCCGGCCTTGGCTGGCCAAGAAGCTGATCTTCAT
GAATGCCTCCAGCGAAAATAAATGCAGGCGCCGTGGGGTAATCCCCGAGG
CGGCCGTGGGAACGCCAGAGACTTCGCGAGAGCGGGACGTAGACAGGATG
ATATGAGGGGAGCAGATGGAGATGAGGCATCCAAAGGGAAGAAAATTGAA
AAGCTGAAACGAAAAGGCGACCACGAGATTTGTCGCCCCTTGAAAACGTC
AGAAAGCCTCTGTCCGAAAACCATGACGATGGATAGACTTGACGAGTCCC
TGCATTGCCACGCGATCCTTCCGGCCTTGGCTGGCCAAGAAGCTGATCTT
CATGAATGCCTCCAGCGAAAATAAATGCAGGCGCCGTGGGGTAATCCCCG
AGGCGGCCGTGGGAACGCCAGAGACTTCGCGAGAGCGGGACGTAGACAGG
ATGATA
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Synonyms
Publications