EWM25048.1, cds5627 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25048.1
Unique Name	cds5627
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:470432..470513 -
Alignment location	CM002466.1:470127..470347 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25048.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100049g24.2107.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:470432..470513 -
CM002466.1	supercontig	CM002466.1:470127..470347 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM25048.1 vs. NCBI_GenBank
Match: gi|585106684|gb|EWM25048.1| (hypothetical protein Naga_100049g24 [Nannochloropsis gaditana])

HSP 1 Score: 204.912 bits (520), Expect = 5.915e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query:    1 MQAPWGNPRGGRGNARDFARAGRRQDDMRGADGDEASKGKKIEKLKRKGDHEICRPLKTSESLCPKTMTMDRLDESLHCHAILPALAGQEADLHECLQRK 100
            MQAPWGNPRGGRGNARDFARAGRRQDDMRGADGDEASKGKKIEKLKRKGDHEICRPLKTSESLCPKTMTMDRLDESLHCHAILPALAGQEADLHECLQRK
Sbjct:    1 MQAPWGNPRGGRGNARDFARAGRRQDDMRGADGDEASKGKKIEKLKRKGDHEICRPLKTSESLCPKTMTMDRLDESLHCHAILPALAGQEADLHECLQRK 100

The following BLAST results are available for this feature:

BLAST of EWM25048.1 vs. NCBI_GenBank

BLAST of EWM25048.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106684\|gb\|EWM25048.1\|	5.915e-67	100.00	hypothetical protein Naga_100049g24 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5642	rna5642	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications