rna5628, rna5628 (mRNA) Nannochloropsis gaditana

Overview
Namerna5628
Unique Namerna5628
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1854
Alignment locationCM002466.1:441392..443583 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g39.2103.mrna
Orig protein idgnl|cribi|Naga_100049g39.2103
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:441392..443583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g39gene5439Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25044.1cds5614Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5628rna5628-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5628 ID=rna5628|Name=rna5628|organism=Nannochloropsis gaditana|type=mRNA|length=1854bp
GCACACCATTCTATTGGGATGAAAGACATGACAGAAAGCAGGCACCGAAA
TCGTTCCAATTTTTACACCTTGTCTTCATTAAGACGTAGCGGCATTCTCA
TGTCAGCATTGGCACGCACGATTCCTAGTCAACACATGGCACTTTTTCCT
GCAGCCCCTCCATGCGTCTTGAACAAAGGCGATAAGAAAGGGTTTAACTG
AGCATTTAAACCGTCGTCAGAGCCTCACACACACATGTATTTCGATACGC
GCGCAGGCCTTTCCCCTTGGGCCAATGCAAGCGGAACACAAGCCCCTACG
CGACCTGGATTCAGGGAGAGAAATTGTAAGGGTTCAGATCATTCACTTGG
CCCTTGCGGCCTGGGGATTGTCCTCATGGATTTTATTTAACGGTCTATGG
GGCCAGCTGCCGATGTTTGTGCGGACCCTGCCGGAGGGAAACAAGCTGGG
TGTGCTTATTTTGACGGCAGAGCAGCTCGCCTACATCTTCCCCTTGCTCT
TCATGTACAAAAAGCGCCACTTTAGCAACTCCCGTCGATCACAAGAGGTA
CGACTCGAGCTTCCAAACCTCCAAATCAAGCCCACGCACCAGATTCTAAT
CCCTTCCCTCCTCCTCTTGAGCTGCTTGCTCCCTCCCTCCAGACGATTGA
CACCTCTCCACACCTACCATCGTGGTTGCCCCTCTTTCCATCCAGATCGA
CATTTGGATCCTCCTCGCCTCGGGGCTTGTCGTCTCCCTCCTTCTCCCGC
GCTACTGGCGGGCCCAAGTCCCTATCCAGGGCGTACCCCATAGCGCCGGC
CTCCTCGTCCTCGCCTTTTTCACCGGCGCCGTCTGCAGCAGCACGGGCGT
GGTCTTCACGCCCTACCTGGCCACACTCCCCAAGAGCTACACCTCCACCC
ACACGGCCGGGGCGGGGCTCAGTGGCCTGGCAATCGCCCTCCTCACCCTG
GCGGCGGACGCCGGCTCCCTCCATCCCCGCCTCTCCCCGGGGCACTACTT
CAACCTCCTCTCCCTCGTCCTCCTCGTCGGCATGGCGGCTTTCGGCTTCG
TGAGCCGGCGCGTGCACGCCTCCGTCCAAGAGGAGCGGGAAGAAGCCCGG
GACGCCGAGCCTGCGGCCGGCATCGAGGAGGCGCATGGGCCGCGGCAGTA
CGGGACTCTGGCCGACCGGAGTCTGGAGGAGTCGGGAGAGCGGCCTGACG
GCGACCGCCACCCCCTCATCCCCCGTGGGGTCGACTCGGGAGACCCGCTG
GAGGCGCCCGCGGACCCTTCCTCCTCCCTTCCCTACGCCTCCCCCCCTCC
ACTCTTCCCTCCCCTCTGTCCGAGACTCCCACGTGGCGGTGTTCGGCTTG
CAATGTCTCCTCTCCGCCCTCGCCTACGGCGTCGTCCCTTCCACCCTCCC
CATGGCCTGCACGGGCTACCAAAACCCCTCGCGGGTCCTGCTGTTAGCCA
ATGGAGGCTTCATGTGCGCGGACCCCCTGGGAAAGCTGGCCACGAGCTTT
CTTCCCACCGGCCGAATCTTCATGTCCGGGGCAGCAACCATCTGCCTTGC
TGTCTTGCTCTTGTACTGCGCCTTCAGTGGGTCCGCGCCCCCCCTGGCCC
TTCGCCCGTACGGCGGAGTGCTGGTGGTGGTGGCCAACACCATGTTCAGC
TTCATGTTCTCTTTCACGTCCATATCCATTTTTTTTCGACCGGCGGCGTC
AGGAGGAAGCGGCGCGGGCCCGGAAGGCGGGGAGGATCGGAGGCGACGGG
GGCGACGCAGCGTACCAGTGGTTCGCATTGTCGGCCTTCATGGTGCAGAC
GGGCGCGTTTTTGGGCACAGGCCTGTCCTTGGCTGGCGTGCTCCTGTGGT
CGTA
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protein sequence of rna5628

>rna5628-protein ID=rna5628-protein|Name=rna5628|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MAAFGFVSRRVHASVQEEREEARDAEPAAGIEEAHGPRQYGTLADRSLEE
SGERPDGDRHPLIPRGVDSGDPLEAPADPSSSLPYASPPPLFPPLCPRLP
RGGVRLAMSPLRPRLRRRPFHPPHGLHGLPKPLAGPAVSQWRLHVRGPPG
KAGHELSSHRPNLHVRGSNHLPCCLALVLRLQWVRAPPGPSPVRRSAGGG
GQHHVQLHVLFHVHIHFFSTGGVRRKRRGPGRRGGSEATGATQRTSGSHC
RPSWCRRARFWAQACPWLACSCGR
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mRNA from alignment at CM002466.1:441392..443583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5628 ID=rna5628|Name=rna5628|organism=Nannochloropsis gaditana|type=mRNA|length=2192bp|location=Sequence derived from alignment at CM002466.1:441392..443583- (Nannochloropsis gaditana)
GCACACCATTCTATTGGGATGAAAGACATGACAGAAAGCAGGCACCGAAA
TCGTTCCAATTTTTACACCTTGTCTTCATTAAGACGTAGCGGCATTCTCA
TGTCAGCATTGGCACGCACGATTCCTAGTCAACACATGGCACTTTTTCCT
GCAGCCCCTCCATGCGTCTTGAACAAAGGCGATAAGAAAGGGTTTAACTG
AGCATTTAAACCGTCGTCAGAGCCTCACACACACATGTATTTCGATACGC
GCGCAGGCCTTTCCCCTTGGGCCAATGCAAGCGGAACACAAGCCCCTACG
CGACCTGGATTCAGGGAGAGAAATTGTAAGGGTTCAGATCATTCACTTGG
CCCTTGCGGCCTGGGGATTGTCCTCATGGATTTTATTTAACGGTATGTAT
TCGGGGACGGATGCGTGCGTGGTGTGGGAAGTGAGCTGAAAGCCCGGTAG
AGGGAAGGAATGGCATGGCCACGCGTACACGATTCCAGGCTCGAGACCTC
CCCGCATTCGGCCAAGTGTATTCTGTATGTTACTGCCCCCTGTTCCGCAC
ATTCTGCTCGCATGAACACGTTCTCACTAAGTCTCTGCCCCTTCTGTGCC
GGGAGCAGGTCTATGGGGCCAGCTGCCGATGTTTGTGCGGACCCTGCCGG
AGGTAAGTTGTCGCGAGCCACTCAGGCGTCTGTCCCAGGGCGACGAGGAT
CATGACTTTGCTTGTGCCTTATCCTGACTGGATATTTCTGGCCCTCTTGT
CCGTACGTTCCATTTCTCTGGAAGGGAAACAAGCTGGGTGTGCTTATTTT
GACGGCAGAGCAGCTCGCCTACATCTTCCCCTTGCTCTTCATGTACAAAA
AGCGCCACTTTAGCAACTCCCGTCGATCACAAGAGGTACGACTCGAGCTT
CCAAACCTCCAAATCAAGCCCACGCACCAGATTCTAATCCCTTCCCTCCT
CCTCTTGAGCTGCTTGCTCCCTCCCTCCAGACGATTGACACCTCTCCACA
CCTACCATCGTGGTTGCCCCTCTTTCCATCCAGATCGACATTTGGATCCT
CCTCGCCTCGGGGCTTGTCGTCTCCCTCCTTCTCCCGCGCTACTGGCGGG
CCCAAGTCCCTATCCAGGGCGTACCCCATAGCGCCGGCCTCCTCGTCCTC
GCCTTTTTCACCGGCGCCGTCTGCAGCAGCACGGGCGTGGTCTTCACGCC
CTACCTGGCCACACTCCCCAAGAGCTACACCTCCACCCACACGGCCGGGG
CGGGGCTCAGTGGCCTGGCAATCGCCCTCCTCACCCTGGCGGCGGACGCC
GGCTCCCTCCATCCCCGCCTCTCCCCGGGGCACTACTTCAACCTCCTCTC
CCTCGTCCTCCTCGTCGGCATGGCGGCTTTCGGCTTCGTGAGCCGGCGCG
TGCACGCCTCCGTCCAAGAGGAGCGGGAAGAAGCCCGGGACGCCGAGCCT
GCGGCCGGCATCGAGGAGGCGCATGGGCCGCGGCAGTACGGGACTCTGGC
CGACCGGAGTCTGGAGGAGTCGGGAGAGCGGCCTGACGGCGACCGCCACC
CCCTCATCCCCCGTGGGGTCGACTCGGGAGACCCGCTGGAGGCGCCCGCG
GACCCTTCCTCCTCCCTTCCCTACGCCTCCCCCCCTCCACTCTTCCCTCC
CCTCTGTCCGAGACTCCCACGTGGCGGTGTTCGGCTTGCAATGTCTCCTC
TCCGCCCTCGCCTACGGCGTCGTCCCTTCCACCCTCCCCATGGCCTGCAC
GGGCTACCAAAACCCCTCGCGGGTCCTGCTGTTAGCCAATGGAGGCTTCA
TGTGCGCGGACCCCCTGGGAAAGCTGGCCACGAGCTTTCTTCCCACCGGC
CGAATCTTCATGTCCGGGGCAGCAACCATCTGCCTTGCTGTCTTGCTCTT
GTACTGCGCCTTCAGTGGGTCCGCGCCCCCCCTGGCCCTTCGCCCGTACG
GCGGAGTGCTGGTGGTGGTGGCCAACACCATGTTCAGCTTCATGTTCTCT
TTCACGTCCATATCCATTTTTTTTCGACCGGCGGCGTCAGGAGGAAGCGG
CGCGGGCCCGGAAGGCGGGGAGGATCGGAGGCGACGGGGGCGACGCAGCG
TACCAGTGGTTCGCATTGTCGGCCTTCATGGTGCAGACGGGCGCGTTTTT
GGGCACAGGCCTGTCCTTGGCTGGCGTGCTCCTGTGGTCGTA
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Coding sequence (CDS) from alignment at CM002466.1:441392..443583-

>rna5628 ID=rna5628|Name=rna5628|organism=Nannochloropsis gaditana|type=CDS|length=823bp|location=Sequence derived from alignment at CM002466.1:441392..443583- (Nannochloropsis gaditana)
ATGGCGGCTTTCGGCTTCGTGAGCCGGCGCGTGCACGCCTCCGTCCAAGA
GGAGCGGGAAGAAGCCCGGGACGCCGAGCCTGCGGCCGGCATCGAGGAGG
CGCATGGGCCGCGGCAGTACGGGACTCTGGCCGACCGGAGTCTGGAGGAG
TCGGGAGAGCGGCCTGACGGCGACCGCCACCCCCTCATCCCCCGTGGGGT
CGACTCGGGAGACCCGCTGGAGGCGCCCGCGGACCCTTCCTCCTCCCTTC
CCTACGCCTCCCCCCCTCCACTCTTCCCTCCCCTCTGTCCGAGACTCCCA
CGTGGCGGTGTTCGGCTTGCAATGTCTCCTCTCCGCCCTCGCCTACGGCG
TCGTCCCTTCCACCCTCCCCATGGCCTGCACGGGCTACCAAAACCCCTCG
CGGGTCCTGCTGTTAGCCAATGGAGGCTTCATGTGCGCGGACCCCCTGGG
AAAGCTGGCCACGAGCTTTCTTCCCACCGGCCGAATCTTCATGTCCGGGG
CAGCAACCATCTGCCTTGCTGTCTTGCTCTTGTACTGCGCCTTCAGTGGG
TCCGCGCCCCCCCTGGCCCTTCGCCCGTACGGCGGAGTGCTGGTGGTGGT
GGCCAACACCATGTTCAGCTTCATGTTCTCTTTCACGTCCATATCCATTT
TTTTTCGACCGGCGGCGTCAGGAGGAAGCGGCGCGGGCCCGGAAGGCGGG
GAGGATCGGAGGCGACGGGGGCGACGCAGCGTACCAGTGGTTCGCATTGT
CGGCCTTCATGGTGCAGACGGGCGCGTTTTTGGGCACAGGCCTGTCCTTG
GCTGGCGTGCTCCTGTGGTCGTA
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Synonyms
Publications