rna5623, rna5623 (mRNA) Nannochloropsis gaditana

Overview
Namerna5623
Unique Namerna5623
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1207
Alignment locationCM002466.1:430905..431578 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100098g20.5277.mrna
Orig protein idgnl|cribi|Naga_100098g20.5277
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:430905..431578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g20gene5435Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5623rna5623-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25083.1cds5609Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5623 ID=rna5623|Name=rna5623|organism=Nannochloropsis gaditana|type=mRNA|length=1207bp
ATCACAAGCATCGAAATCATTGATTGCTTCCCTCTCATCTTCATACAAAT
GATACAGAGGAAGCTTCATGAAATCCTCTGTAGCCCCATCAGGGAAGGAC
CTGGATGCCTGGCTGTCAACGTGGCCGCATGTACACGGGCAATATCGATC
CCTTATCACAAGTCTGCAGCGGCGGAAAGTGGCAGGCTCACTACCATGCG
CCAAGATGACCATCGAGTTGCTGAAGGCAGTAATGGGCACCTGTCGGTGG
ACGACAGCGGCCGAGCTCATGAGCGTGGTCAAGCGCGTGGGCAAGGCCCT
GGTCGACGCGCAGCCCCTCCAGCTCGTCGTAGGAAATGTAGTGCGTCGGA
TCCTTTTCATCATCCGAGAGGAGCATAAAAACAAGCTGCGGGAGGTTCGT
GCCCGCGAAGGGGGAGCCACCGCGTCCTTGTCCGACGACGGCGAGGCAGG
AAACGAGCTGGAGGCAAGCGTACCAGGGCTCCGGACGGGCGTCATGGAGG
CGATCGGAGAGCTTCAGTTGGAACTGGACAATGTGTACAATGAGATATGC
GAACTCGCCCTTGAGCATATCCACGCGAATGAGGTGATCCTGACGGTGGG
CAGGTCGAAGACGGTGGAAACCTTCCTTCGAGAGGCTGCTGAGAGACGGC
GGGCCTTTGAGGTGATAGTTGCGGAGTCGGCCCCGGACATCGCAGGGCGG
GAGATGGCCAAGAGCCTGGCAGCCGCGGGGATTGAGACCACCGTCATAAG
CGACAGTGCCGTATACGCAATCATGGCGCGGGTGAATCAGGTCCTCCTGC
CATGCCGAGCACTGATAGCGAACGGGGGGCTGATCGCACCCTGCGGGGGG
CACATGGCGGCGTTGGCGGCCAAGGAGCTGTCAGTGCCCGTGGTGTGCGT
GACGGGGCTGTTCAAACTCTCCCCAGTGTACCGGCACGATCAAGACGCCT
TCAACGACCTCAGGTCCCCCAGCGCCCTGATCGAGTACGCCGACACCCAG
CTCTTGCCGGAGGCAGATTTCTTGAATCCGGCCTACGACTACGTGCCTCC
CGAACTGGTGGACCTGTACATAACCAACACTGGCGGTCACCAGACCTTTT
ACTTGTACCGACTTCTGGGCGAGTACTACCATCATGACGACTCGAGTTTG
GACTAGGGCTCGGGGGGGGCGGGGGGATAAAGTGGGGAGGCAACGAGCTT
GCATGCA
back to top

protein sequence of rna5623

>rna5623-protein ID=rna5623-protein|Name=rna5623|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MAGATDKRRAKVFFPVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAP
RHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNH
SLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGL
VLLSSSTTLKAEDEKSNKSKGNESA
back to top

mRNA from alignment at CM002466.1:430905..431578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5623 ID=rna5623|Name=rna5623|organism=Nannochloropsis gaditana|type=mRNA|length=674bp|location=Sequence derived from alignment at CM002466.1:430905..431578+ (Nannochloropsis gaditana)
ACCAACAGGACAAAATTTATAAACAAGCTACCACGTCGAGCCATCGTTGT
GTCTCATTTACAAACGGGAGAGTGCAGACGTGGTACAACGACACGGGCGG
CGGCGctggggcgggggaggaggtaaagggaACCTATCCATGGCAGGTGC
CACcgacaagaggagggcaaaggtGTTCTTTCCTGTCTTACTTCTCCTAC
ACGCGAATAACATCTCTTTAAGCCATGCGGCCTTTGTGCGGAGATTTTCA
ATTTTGAATGCCAGCCCCCGGGTCATGGCCGTAGCACCTCGACATGCCGC
CTCTGTGCCGTCCTACCGCGTAATCCGCCGTGCTCCCATGCACAGGAATG
AAAGTTTAGCGCGAGACGTAACGATAACCGTAAGCCTTGCGGATGGTAGA
AATTTCACCTTTCAGGATGCCTGTCCACCCACCAACCACTCTCTGTTGCA
TGCCGAGATAGACCCTGAGATCCTTTCCATTCGAGACCCCGTGTTCGGTA
CTCGGTTCGACATGCGCACGGGCAACCTTCGCGGGATGTGGTGTCCTCAA
AGGTGGTGGGCACGCAACCTTTTTGAGCCTGCGGGGCTCGTCTTGCTGTC
GTCCTCCACAACCTTAAaagcggaggacgagaagagcAACAAATCAAAAG
GAAACGAAAGCGCTTGACAACTAC
back to top

Coding sequence (CDS) from alignment at CM002466.1:430905..431578+

>rna5623 ID=rna5623|Name=rna5623|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002466.1:430905..431578+ (Nannochloropsis gaditana)
ATGGCAGGTGCCACcgacaagaggagggcaaaggtGTTCTTTCCTGTCTT
ACTTCTCCTACACGCGAATAACATCTCTTTAAGCCATGCGGCCTTTGTGC
GGAGATTTTCAATTTTGAATGCCAGCCCCCGGGTCATGGCCGTAGCACCT
CGACATGCCGCCTCTGTGCCGTCCTACCGCGTAATCCGCCGTGCTCCCAT
GCACAGGAATGAAAGTTTAGCGCGAGACGTAACGATAACCGTAAGCCTTG
CGGATGGTAGAAATTTCACCTTTCAGGATGCCTGTCCACCCACCAACCAC
TCTCTGTTGCATGCCGAGATAGACCCTGAGATCCTTTCCATTCGAGACCC
CGTGTTCGGTACTCGGTTCGACATGCGCACGGGCAACCTTCGCGGGATGT
GGTGTCCTCAAAGGTGGTGGGCACGCAACCTTTTTGAGCCTGCGGGGCTC
GTCTTGCTGTCGTCCTCCACAACCTTAAaagcggaggacgagaagagcAA
CAAATCAAAAGGAAACGAAAGCGCTTGA
back to top
Synonyms
Publications