EWM25083.1, cds5609 (CDS) Nannochloropsis gaditana

Overview
NameEWM25083.1
Unique Namecds5609
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:431044..431571 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25083.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100098g20.5277.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:431044..431571 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR017941Rieske_2Fe-2S
Homology
[Close]
BLAST of EWM25083.1 vs. NCBI_GenBank
Match: gi|585106720|gb|EWM25083.1| (hypothetical protein Naga_100098g20 [Nannochloropsis gaditana])

HSP 1 Score: 359.762 bits (922), Expect = 8.611e-126
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 
Query:    1 MAGATDKRRAKVFFPVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLSSSTTLKAEDEKSNKSKGNESA 175
            MAGATDKRRAKVFFPVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLSSSTTLKAEDEKSNKSKGNESA
Sbjct:    1 MAGATDKRRAKVFFPVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLSSSTTLKAEDEKSNKSKGNESA 175
[Close]
BLAST of EWM25083.1 vs. NCBI_GenBank
Match: gi|553193102|ref|XP_005855709.1| (hypothetical protein NGA_2060500, partial [Nannochloropsis gaditana CCMP526] >gi|422293352|gb|EKU20652.1| hypothetical protein NGA_2060500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 313.923 bits (803), Expect = 5.265e-108
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0 
Query:    1 MAGATDKRRAKVFFPVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLS 154
            MAGATDK RAKVFFPVLLLLH NNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLS
Sbjct:    1 MAGATDKMRAKVFFPVLLLLHVNNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLS 154
The following BLAST results are available for this feature:
BLAST of EWM25083.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106720|gb|EWM25083.1|8.611e-126100.00hypothetical protein Naga_100098g20 [Nannochlorops... [more]
gi|553193102|ref|XP_005855709.1|5.265e-10898.70hypothetical protein NGA_2060500, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5623rna5623Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications