rna5618, rna5618 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5618
Unique Name	rna5618
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1548
Alignment location	CM002466.1:417106..421180 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100098g15.5264.mrna
Orig protein id	gnl\|cribi\|Naga_100098g15.5264
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:417106..421180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100098g15	gene5430	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5618	rna5618-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25070.1	cds5604	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:417106..421180+
coding sequence from alignment at CM002466.1:417106..421180+

mRNA sequence

>rna5618 ID=rna5618|Name=rna5618|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp
AAACTGGACATAGCCTGTTCATGATCCACCAAAAAAATTGATCGAAAGAT
GTCCGACATGTGGTGCGTCACAACGGAATAAGGCACTTTTTTCTCCCTGC
AGACCGCCGGGGCGTTGAAGTTTGAACACAAGCATCGTAAGATACGCCCC
TGAGTTCTGATGCTTGAGCGGCATCAGTTGCTCTGAAAACAAGCTGATTG
TGCGCCAATATGCGCAAAATGCTTTTTCCATATGTGGATTGTGAAGGTCC
ACGCAGCAGCTGGTGAGTCGACACGTTCTACTCGTCCGTTGTTTATTTCA
AGGGGCAAAAGATTTTCGTGCTTGCCTGCTTTTGCCAGCAAGAGCAAGAA
AGAAGAACGTTGACGGGCATTGCTCGTATAAGCAGTCGCGTCACAAAAGA
TGGATGAGCAGAACAGTTTCACTATTCTGTCAAATGCATCACGCGTAGAC
AAGATAATCTAGCTGTGTCTCAAAATCATACTGATGCCTTTGCATCTCTT
TCTCCTTCTAGATATCCGACTACTATGCGTGTCATCTCAACTGCAGCTTT
TTTGGCCCTTCTAGGCTCCGCCATCGCCTTCATTCCTCAGGCACCTCAGT
CCACTCAGAAGATGGACCTTGGCAAGGCAGTCCAGAAACTCCTCGTAGGC
CCCGCTCTAGTCCTCGGCGTTTACGGGGGCCCCATGATCCAGCCCGTGCA
CGCCGACGGGAGTGTGTCCTCCACGACCGTCCAGCGCGCAAGTGGGCTTT
ACGGTCCACGCGTCATTGCCTTGAAGGATGCTGTCGCCAAGGGCGACTTT
GCGGCACTGGATAAGGCAGATGGCGCGATACGCTTGTTCAACAGCGGAGC
ATTTGCCCTCAACAAGCCTCAAAAATTGAAGGTCCAGGCCCTTTATAACG
ACGTGAGGGCCGCAGTGGTGAAGAAAGATGCGAGCCGCCTGAAGACGGCT
TGGGCCATGTACTTCAAGGAAGCGGGATTGGACAAGACCAACCCCTTCTC
GCTCAAGGACGCAGGGCAAAGCTATTCTGGAGACTTTGATTTCCGCCGTG
GCTCGCCCCTTTTCGACCCGCGCGTGGGAAATTAAACAGTCAATTTGAAG
GAATTCGCTGACAACGGACGGCCATTCGGGTAAGGGGTATAGGAGGGGAG
TGCAAAAGTGACGGCTGGGGTATCAGATGAAGGTGAGAAGGCTTGAAAGA
GCAGTCATTGGGATGAGAAAGTTTTCCGGAACGAAAGTCGACGAGCCATC
TGGCCCAATCTGCGTGAGCCACCGGGTACTGCATGCCGCATGTTCAGAGC
GAAATCCGTTCTGGAAAAAGAAGAATGAATTTCAGTGCATTTGCCGTCCT
GCGACTGGAAAACCAAGGCGACGGGGTGTTTTTTAAAAGAAGCTCGTTTG
AGAATCGACCTCCTTCCACGATTATTTAGTTTACTTTCAGACATCTCGAG
CTTCCATATTGGAACAAGATCTAGGTAGTTTTACAAGTGTTACCAGCCTA
ATTTGATCAAGCACAATGGAAGACGAGAAGAACATAACTCCTGTAGCC

protein sequence of rna5618

>rna5618-protein ID=rna5618-protein|Name=rna5618|organism=Nannochloropsis gaditana|type=polypeptide|length=992bp
MEKLPAAAACGGIRLGAAQDVQLPRERKRRRPGTMLCRGVEDSRTDRKCE
PHAILTVDSAVTSDISLTDVCSSHSACWNDSSLEEWRGGGLVPGRLPPSA
RKSGSPFLCRAQRGKSFTSCVLSSPVLVLLVLLVPLRLVEAFTFLPQLPT
CRHHFFFHPADPPPPGSSPLSTIVNLAAGGESGGAGPEEHMPGGASLVDL
ARRRFWRWTVWRRLYHSSVATVLKQQASVAAYLPSINRRRSGHDSTYTKP
RPFLFSAPDAGPVTVASSSCAFNAVHLVTRAAAPEQKSLIYVNGTEVSGH
LRLGGVAPTPSPRRSRRRDGQGTGTMTERTASAQGVLDPKAPLSLSLVGE
FCIDKPAYLHIAPTKAGAMPLLWVTQFSITRRGSVSGINIFGQAHAPDPT
ASPLPLPPAFPPTSLSTQAPAARSSASVSSQVQPPPPSSLLLQDQSPADM
PIARPRSPAPGTEPIHPNPAPEEIKLGFSFRWPNEVYNLPPNTIAGVSEE
ALLVADGFLMPGRSDGGLYVVQQPGTSLERVTSLTRHRPGWFYHKATWVD
LLGPGGRPCLLTARATKPFFAQTEGELVLLLQPEGPFPLAEWNTPWQEVV
LAKGPDVMFDVADLDPTDDVLEVFASEFFSRRLSLHRIIKGDWRTGRLPR
VLTSEVLDDALGPAYSVVLADLRGQGRPSHVLVSSHECQYEGLVEGGSVK
EGGRGSGRQTRDERLRREAAAYAEGKETEARRSKDPLGFSGAGPILESVG
LTGASGRALSDGVDGGREDTEGQDGAGRAADEGAALNGGSLFAYEIPPDW
RQRACWKRSTLATGFHVKNWGQINPGAPGFPYVFYPHRSLRGQPGQRPYI
LLAGDCSHAAYIYRPVLGRDGGGGDEAEVQYEPMAQINCGGTVGSLAVGH
LPLAVGESEEWEEDDDGWAKIFIPNFDTDKVYAFSFGPEKVSFLSGLSPP
SVPSEPHLKLEAERKARVAEEDEIVNGINSYAKTRGEKTKIG

mRNA from alignment at CM002466.1:417106..421180+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5618 ID=rna5618|Name=rna5618|organism=Nannochloropsis gaditana|type=mRNA|length=4075bp|location=Sequence derived from alignment at CM002466.1:417106..421180+ (Nannochloropsis gaditana)
taTCGGCCCGCGGTTCTGGAACAGGAATAGAATCCATGGCTGTCTCGGAG
TAAACTTCGAGTCAGCGTGCATTGTCGGGAGTCAAAGGAGTCACTCGGCG
CCAATTAAATGAGACCGAGAGGGTAGACCTCCCCTTTGgccatgctccct
cctcgctccgtGCCATCACTGAAGCGCTCCCGACACAATGAGTCATGGAG
ATAATGCAGAACCTTTTGAGCATTTGTACACTTGAAATCTTGCATTCATC
ATTGATATATGTGTGATTGTGTAATGTGTAGAAATGCATTGACAGCACCA
GCGTGTTTCACGTGCACGACGAGAGCGGACGACGAAAGGGTGAGCACGAT
AACTGAGGTGGTAAGAGTCGTCGGTCGGCCGAGCCCCTGAGGCTGCCACT
TTTGATTTGCAACCCCATGCATCGTCACGTGGATTTTTTCTGTACTCATA
ACAGCGTTGCTGTGAGGTCAAGGTGCTGACACCTCACGACCAATTCCGAC
AACTCAAAGCACGCGATGGCAAACGAGTAGGGCTGACTCCAGGTACGAGG
GGAACAGGTGTGCAACTGGCCATGACAAGAATATTCAGGTTCACCTCTTA
GGGGGCatatggggaggggaaatcgTCCCCTTCGTCATCCGTGCTCTGTG
CAGTAGAGGTTGATTGTGAGCTTGAGTCCTTTCGCGAGTTCGTCTGTAAC
AGCAGTAGTTCCGAGATGCTATCGGTCTTGCAAGTAATTTGTTTACAATC
TGATGCGACCACTCCATTTTCGTTTATCCATGTACCCTGTCAAATGAAGC
ATGGAAAAACTACCCGCAGCGGCGGCATGCGGTGGCATCAGACTTGGCGC
TGCCCAAGACGTGCAGCTGCccagagagaggaaaagacggAGACCCGGGA
CCATGCTGTGCAGGGGGGTTGAGGACTCCCGCACAGACAGGAAATGCGAA
CCACATGCAATCTTGACCGTAGATTCTGCCGTCACGAGCGACATCAGCCT
AACGGATGTCTGCAGCAGTCATAGCGCCTGCTGGAACGACAGCAGTctgg
aggaatggaggggcgggggcctcgTCCCAGGAAGACTTCCACCGTCGGCC
AGAAAGTCGGGCTCACCATTCCTTTGTCGTGCtcaaagaggaaagagcTT
TACATCCTGCGTGTTGTCCTCGCCCGTTCTGgtcctgctcgtcctccttg
tccccctaCGCCTCGTCGAGGCCTTCACCTTCTTGCCGCAGCTTCCCACC
TGCCGCCatcacttcttcttccacccaGCCGATCCCCCACCGCCAGGAAG
CAGCCCTTTGTCCACCATCGTCAACTTggccgcgggaggagagagcggtg
gtgcggggccggaggagcaCATGCCGGGGGGAGCGTCCCTGGTCGACCTG
GCCCGCCGCCGGTTCTGGCGATGGACGGTCTGGCGCCGCCTCTATCATTC
CTCGGTCGCCACGGTGCTCAAACAGCAGGCCAGTGTGGCGGCCTACTTGC
CGAGCATTAACCGGCGGCGGTCTGGGCACGACTCGACGTACACGAAGCCG
AggcctttcctcttcagcgCTCCCGACGCGGGTCCCGTCACcgtcgcctc
ttcctcttgcgccTTCAATGCCGTTCATCTTGTCACTCGGGCGGCAGCAC
CGGAGCAGAAATCGCTCATTTATGTGAACGGAACGGAGGTTTCGGGTCAT
TTACGCCTGGGGGGTGTCGCTCCGACGCCCTCACCGCGGAGGTCGAGGCG
TCGCGATGGACAAGGGACTGGGACGATGACTGAGAGGACAGCGTCCGCAC
AAGGTGTTCTTGACCCCAAGGCCCCTTTAAGTCTGAGTCTGGTCGGCGAG
TTTTGCATCGACAAGCCCGCATACCTGCACATCGCCCCTACCAAGGCGGG
CGCCATGCCCCTGCTCTGGGTCACCCAGTTCAGTATCACGCGCCGTGGCT
CCGTAAGCGGGATCAACATATTTGGACAGGCCCATGCCCCCGatcccacg
gcctcccccttgcctctccctccagccttccccccgacctccctaTCGAC
TCAGGCGCCGGCGGCAAGGTCATCAGCCTCGGTGTCCTCCCAGGttcagc
ctcctccgccgtcgtccctcctcctccaagaccaAAGCCCCGCCGACATG
CCAATTGCACGGCCAAGATCCCCAGCCCCCGGCACAGAGCCTATCCATCC
TAATCCGGCGCCGGAGGAAATAAAGCTCGGCTTTTCTTTCCGCTGGCCGA
ACGAAGTCTACAACCTCCCCCCGAATACCATTGCTGGAGTCTCTGAAGAA
GCGCTGCTCGTGGCGGACGGCTTTCTCATGCCGGGGCGCTCCGATGGGGG
CCTGTACGTGGTCCAGCAGCCTGGCACCTCCTTGGAGCGAGTCACGAGCC
TCACGCGGCACCGGCCTGGCTGGTTCTACCACAAGGCGACGTGGGTGGAC
CTGCTGGGACCGGGGGGGCGACCCTGCCTCCTGACGGCGCGGGCGACGAA
ACCCTTCTTCGCGCAAACAGAGGGAGAGTTGGTCTTGCTCCTGCAACCGG
AGGGCCCTTTCCCGCTCGCCGAATGGAACACGCCCTGGCAGGAGGTGGTT
CTAGCCAAGGGGCCTGACGTCATGTTCGACGTGGCCGACCTGGACCCGAC
GGACGACGTGCTGGAGGTATTCGCGTCGGAATTCTTTTCCCGCCGGCTCT
CCTTGCACCGCATCATCAAAGGGGACTGGCGGACAGGCCGGCTGCCGCGC
GTGTTGACCTCAGAGGTGCTGGATGATGCCTTGGGCCCCGCGTACAGCGT
AGTGCTCGCCGACCTCAGAGGACAGGGGCGGCCCTCCCACGTCCTTGTCT
CGAGCCACGAATGCCAGTACGAGGGCCTGGTCGAGGGGGGGTcggtgaag
gaaggggggagagggagcgggaggcagacCCGGGATGAGCGGCTGAGGCG
CGAGGCGGCAGCGtacgcggaggggaaggagactgAAGCCCGCCGGTCAA
AGGATCCCCTTGGTTTCAGTGGTGCTGGCCCGATCCTGGAAAGTGTGGGG
CTTACAGGTGCATCCGGACGGGCTTTGAGCGACGGGGTCGACGGAGGCCG
TGAGGACACCGAGGGTCAGGACGGCGCAGGCAGGGCGGCAGACGAGGGAG
CAGCCTTGAACGGCGGCTCCTTGTTCGCTTACGAGATCCCCCCGGACTGG
CGCCAGCGCGCGTGTTGGAAACGCTCCACCCTCGCCACGGGCTTCCACGT
CAAAAACTGGGGCCAGATCAATCCGGGCGCCCCCGGATTTCCCTATGTTT
TTTACCCCCACCGGTCCCTCCGCGGCCAGCCGGGTCAGCGCCCGTACATC
CTCTTGGCCGGAGATTGCTCCCATGCTGCCTACATATACAGGCCGGTGCT
TGGTcgtgacggcggaggaggggacgaagccGAAGTCCAGTATGAACCCA
TGGCGCAGATCAATTGCGGAGGCACGGTGGGCTCCTTGGCCGTAGGCCAT
TTGCCTTTGGCAGtgggagaaagcgaggaatgggaagaggacgacgacgg
aTGGGCGAAGATATTTATACCCAATTTTGATACGGACAAAGTTTATGCAT
TCTCATTCGGGCCAGAGAAGGTCTCCTTTTTGTCGGGTTTGAGTCCGCCC
TCGGTGCCTTCAGAGCCTCATTTGAAATTAGAGGCTGAGAGGAAAGCGCG
CgttgcggaggaggatgagattGTGAATGGTATAAACTCGTATGCGAAGa
caaggggagaaaagacgaAAATAGGTTGAGAGTAAGTTGAGAGTGTCTGA
CGGATACGGGAAAAACACTCAGCATGATGTACATTGCTCTTGAGAGGTGT
CCGATGCGGGAACGAGCGGAAAGATTCATAGACAGATGATAATCAAACGG
CGAAGTAAAGAAGCTAGGCAGGCTCCAACTGTGTGTAAGATAGAGAAAAT
CAAAGTGATCTCCCTTGATGAGTGGTCTTGATGGAAGAGAGCAACCCTCC
TGTCTGGATCAGGGAGTGTAAGCATAACTGGAAGCACACCGctcgaaagg
aaaaaaatgaatcGGTCGAAATGTC

Coding sequence (CDS) from alignment at CM002466.1:417106..421180+

>rna5618 ID=rna5618|Name=rna5618|organism=Nannochloropsis gaditana|type=CDS|length=2979bp|location=Sequence derived from alignment at CM002466.1:417106..421180+ (Nannochloropsis gaditana)
ATGGAAAAACTACCCGCAGCGGCGGCATGCGGTGGCATCAGACTTGGCGC
TGCCCAAGACGTGCAGCTGCccagagagaggaaaagacggAGACCCGGGA
CCATGCTGTGCAGGGGGGTTGAGGACTCCCGCACAGACAGGAAATGCGAA
CCACATGCAATCTTGACCGTAGATTCTGCCGTCACGAGCGACATCAGCCT
AACGGATGTCTGCAGCAGTCATAGCGCCTGCTGGAACGACAGCAGTctgg
aggaatggaggggcgggggcctcgTCCCAGGAAGACTTCCACCGTCGGCC
AGAAAGTCGGGCTCACCATTCCTTTGTCGTGCtcaaagaggaaagagcTT
TACATCCTGCGTGTTGTCCTCGCCCGTTCTGgtcctgctcgtcctccttg
tccccctaCGCCTCGTCGAGGCCTTCACCTTCTTGCCGCAGCTTCCCACC
TGCCGCCatcacttcttcttccacccaGCCGATCCCCCACCGCCAGGAAG
CAGCCCTTTGTCCACCATCGTCAACTTggccgcgggaggagagagcggtg
gtgcggggccggaggagcaCATGCCGGGGGGAGCGTCCCTGGTCGACCTG
GCCCGCCGCCGGTTCTGGCGATGGACGGTCTGGCGCCGCCTCTATCATTC
CTCGGTCGCCACGGTGCTCAAACAGCAGGCCAGTGTGGCGGCCTACTTGC
CGAGCATTAACCGGCGGCGGTCTGGGCACGACTCGACGTACACGAAGCCG
AggcctttcctcttcagcgCTCCCGACGCGGGTCCCGTCACcgtcgcctc
ttcctcttgcgccTTCAATGCCGTTCATCTTGTCACTCGGGCGGCAGCAC
CGGAGCAGAAATCGCTCATTTATGTGAACGGAACGGAGGTTTCGGGTCAT
TTACGCCTGGGGGGTGTCGCTCCGACGCCCTCACCGCGGAGGTCGAGGCG
TCGCGATGGACAAGGGACTGGGACGATGACTGAGAGGACAGCGTCCGCAC
AAGGTGTTCTTGACCCCAAGGCCCCTTTAAGTCTGAGTCTGGTCGGCGAG
TTTTGCATCGACAAGCCCGCATACCTGCACATCGCCCCTACCAAGGCGGG
CGCCATGCCCCTGCTCTGGGTCACCCAGTTCAGTATCACGCGCCGTGGCT
CCGTAAGCGGGATCAACATATTTGGACAGGCCCATGCCCCCGatcccacg
gcctcccccttgcctctccctccagccttccccccgacctccctaTCGAC
TCAGGCGCCGGCGGCAAGGTCATCAGCCTCGGTGTCCTCCCAGGttcagc
ctcctccgccgtcgtccctcctcctccaagaccaAAGCCCCGCCGACATG
CCAATTGCACGGCCAAGATCCCCAGCCCCCGGCACAGAGCCTATCCATCC
TAATCCGGCGCCGGAGGAAATAAAGCTCGGCTTTTCTTTCCGCTGGCCGA
ACGAAGTCTACAACCTCCCCCCGAATACCATTGCTGGAGTCTCTGAAGAA
GCGCTGCTCGTGGCGGACGGCTTTCTCATGCCGGGGCGCTCCGATGGGGG
CCTGTACGTGGTCCAGCAGCCTGGCACCTCCTTGGAGCGAGTCACGAGCC
TCACGCGGCACCGGCCTGGCTGGTTCTACCACAAGGCGACGTGGGTGGAC
CTGCTGGGACCGGGGGGGCGACCCTGCCTCCTGACGGCGCGGGCGACGAA
ACCCTTCTTCGCGCAAACAGAGGGAGAGTTGGTCTTGCTCCTGCAACCGG
AGGGCCCTTTCCCGCTCGCCGAATGGAACACGCCCTGGCAGGAGGTGGTT
CTAGCCAAGGGGCCTGACGTCATGTTCGACGTGGCCGACCTGGACCCGAC
GGACGACGTGCTGGAGGTATTCGCGTCGGAATTCTTTTCCCGCCGGCTCT
CCTTGCACCGCATCATCAAAGGGGACTGGCGGACAGGCCGGCTGCCGCGC
GTGTTGACCTCAGAGGTGCTGGATGATGCCTTGGGCCCCGCGTACAGCGT
AGTGCTCGCCGACCTCAGAGGACAGGGGCGGCCCTCCCACGTCCTTGTCT
CGAGCCACGAATGCCAGTACGAGGGCCTGGTCGAGGGGGGGTcggtgaag
gaaggggggagagggagcgggaggcagacCCGGGATGAGCGGCTGAGGCG
CGAGGCGGCAGCGtacgcggaggggaaggagactgAAGCCCGCCGGTCAA
AGGATCCCCTTGGTTTCAGTGGTGCTGGCCCGATCCTGGAAAGTGTGGGG
CTTACAGGTGCATCCGGACGGGCTTTGAGCGACGGGGTCGACGGAGGCCG
TGAGGACACCGAGGGTCAGGACGGCGCAGGCAGGGCGGCAGACGAGGGAG
CAGCCTTGAACGGCGGCTCCTTGTTCGCTTACGAGATCCCCCCGGACTGG
CGCCAGCGCGCGTGTTGGAAACGCTCCACCCTCGCCACGGGCTTCCACGT
CAAAAACTGGGGCCAGATCAATCCGGGCGCCCCCGGATTTCCCTATGTTT
TTTACCCCCACCGGTCCCTCCGCGGCCAGCCGGGTCAGCGCCCGTACATC
CTCTTGGCCGGAGATTGCTCCCATGCTGCCTACATATACAGGCCGGTGCT
TGGTcgtgacggcggaggaggggacgaagccGAAGTCCAGTATGAACCCA
TGGCGCAGATCAATTGCGGAGGCACGGTGGGCTCCTTGGCCGTAGGCCAT
TTGCCTTTGGCAGtgggagaaagcgaggaatgggaagaggacgacgacgg
aTGGGCGAAGATATTTATACCCAATTTTGATACGGACAAAGTTTATGCAT
TCTCATTCGGGCCAGAGAAGGTCTCCTTTTTGTCGGGTTTGAGTCCGCCC
TCGGTGCCTTCAGAGCCTCATTTGAAATTAGAGGCTGAGAGGAAAGCGCG
CgttgcggaggaggatgagattGTGAATGGTATAAACTCGTATGCGAAGa
caaggggagaaaagacgaAAATAGGTTGA

Synonyms

Publications