rna5612, rna5612 (mRNA) Nannochloropsis gaditana

Overview
Namerna5612
Unique Namerna5612
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length384
Alignment locationCM002466.1:406155..407105 +

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Properties
Property NameValue
Productprotein binding protein
Orig transcript idgnl|cribi|Naga_100098g9.5256.mrna
Orig protein idgnl|cribi|Naga_100098g9.5256
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:406155..407105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g9gene5424Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5612rna5612-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25062.1cds5598Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5612 ID=rna5612|Name=rna5612|organism=Nannochloropsis gaditana|type=mRNA|length=384bp
ATGAAGCCTGGCACTACGCCAACCCAAGCCATGAGTGAGGTGGACGTCAT
CCTTCGAGATCTGAAAGCGCAGCCCGGCTTTTCCTCCTACATGATAATGA
ACAACGATGGAATCGTCATAAAATACGAGAATATTGAGTACAAGCGCGCG
GTGCAGATTGCTCATTTGGTGCTAGACTTAGCCTCCAAAGCAAAGCGCGC
AGCCCGAAATCTTTTGGAATCTCCAGAGAATGAAGTAGAGTCTATTCGAC
TCAAAAGCAGGGACTACGAGCTGATCGTTGGGCAAAGTGGAAACTTCACG
TTGGCAGTGGTACAAAATCAGACCCATCATTTTCCACAAGCATCTATCAA
TAGAAGTGGCCACGCCAATGGCAAGAAAGCATGA
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protein sequence of rna5612

>rna5612-protein ID=rna5612-protein|Name=rna5612|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLS
SALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPV
LHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTP
LVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTI
LNDVENGCTMSLPLVYVVMVATVLVTFREWRQLNEDT
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mRNA from alignment at CM002466.1:406155..407105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5612 ID=rna5612|Name=rna5612|organism=Nannochloropsis gaditana|type=mRNA|length=951bp|location=Sequence derived from alignment at CM002466.1:406155..407105+ (Nannochloropsis gaditana)
AAAATGGCGGCGGCTGGCCTCATGTGGGGTGCTGGGCTCATCGTTTTCTC
TCCCATTTCTTGCGTGTTCATCCTTGTCGTCACACGCCGACCCGAACTTG
TCATCATTGCCATCAGCGGCGCGTTCGCTTACCTGGTAGCATTGCTGCTA
TCATCAGCTCTTTGGGCAATGTTTGGGCCTGTCAAGCAGACGGCGGCCAT
CATGGTGGTTTTGGGCGTACTCTGCCAAGTCGTCATGCGTGCAGTCCTCT
ACCGACTTTATCACCGCACAGAAATTCTCATCAAATCTGCAAATCATCCC
GTCCTTCATATGCCTTTGAACGACATTACTTCCTCATTGGCAGCGGGGAC
GGGCTATGGGCTGATGCACGCCGTCATGATTTTCGGAAGCGTACTTGCCT
CGGGTAATTCCGACCCCGGAGTGCTCTTCGCACCATCCTGCACTAGAACA
CCTCTTGTGGTCGTTTTAGCACTTTTGGCGCTTGCGTTTACAATGATGGA
CTTGTCGTTCATGGCGTTAACATTCCTCTACCTTCGTCGACGGAAATGTT
TCAGGATGGGAGTAATATTTCTTATGCATAGTGCTGCTTCAGGGCTGGTG
AGTAAGTTTAGTATATGTGGGAGAAGACTTGTGTCGCGTCCCGCTCAGAA
GAGAGTGAGGGGAATTGGAACAGATTCAATTATCAAATTCTGTTTTTATA
TTCGACTGCCGTAGGCGGTCTCTTGAACGACTCTTCAAAGTATGCCTCGT
CCCAtacgtcctctccctgtctctGCATTCTTTACTCGCACAGACCATAT
TAAATGACGTTGAGAACGGTTGCACGATGTCGCTGCCACTCGTGTACGTT
GTTATGGTTGCCACCGTCCTTGTAACCTTCCGCGAGTGGAGACAGCTGAA
CGAAGACACGTAAGAAAAGCAAGGGCGTCGAAATCAACTTGACCGCTTAT
A
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Coding sequence (CDS) from alignment at CM002466.1:406155..407105+

>rna5612 ID=rna5612|Name=rna5612|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002466.1:406155..407105+ (Nannochloropsis gaditana)
ATGGCGGCGGCTGGCCTCATGTGGGGTGCTGGGCTCATCGTTTTCTCTCC
CATTTCTTGCGTGTTCATCCTTGTCGTCACACGCCGACCCGAACTTGTCA
TCATTGCCATCAGCGGCGCGTTCGCTTACCTGGTAGCATTGCTGCTATCA
TCAGCTCTTTGGGCAATGTTTGGGCCTGTCAAGCAGACGGCGGCCATCAT
GGTGGTTTTGGGCGTACTCTGCCAAGTCGTCATGCGTGCAGTCCTCTACC
GACTTTATCACCGCACAGAAATTCTCATCAAATCTGCAAATCATCCCGTC
CTTCATATGCCTTTGAACGACATTACTTCCTCATTGGCAGCGGGGACGGG
CTATGGGCTGATGCACGCCGTCATGATTTTCGGAAGCGTACTTGCCTCGG
GTAATTCCGACCCCGGAGTGCTCTTCGCACCATCCTGCACTAGAACACCT
CTTGTGGTCGTTTTAGCACTTTTGGCGCTTGCGTTTACAATGATGGACTT
GTCGTTCATGGCGTTAACATTCCTCTACCTTCGTCGACGGAAATGTTTCA
GGATGGGAGTAATATTTCTTATGCATAGTGCTGCTTCAGGGCTGACCATA
TTAAATGACGTTGAGAACGGTTGCACGATGTCGCTGCCACTCGTGTACGT
TGTTATGGTTGCCACCGTCCTTGTAACCTTCCGCGAGTGGAGACAGCTGA
ACGAAGACACGTAAATGGCGGCGGCTGGCCTCATGTGGGGTGCTGGGCTC
ATCGTTTTCTCTCCCATTTCTTGCGTGTTCATCCTTGTCGTCACACGCCG
ACCCGAACTTGTCATCATTGCCATCAGCGGCGCGTTCGCTTACCTGGTAG
CATTGCTGCTATCATCAGCTCTTTGGGCAATGTTTGGGCCTGTCAAGCAG
ACGGCGGCCATCATGGTGGTTTTGGGCGTACTCTGCCAAGTCGTCATGCG
TGCAGTCCTCTACCGACTTTATCACCGCACAGAAATTCTCATCAAATCTG
CAAATCATCCCGTCCTTCATATGCCTTTGAACGACATTACTTCCTCATTG
GCAGCGGGGACGGGCTATGGGCTGATGCACGCCGTCATGATTTTCGGAAG
CGTACTTGCCTCGGGTAATTCCGACCCCGGAGTGCTCTTCGCACCATCCT
GCACTAGAACACCTCTTGTGGTCGTTTTAGCACTTTTGGCGCTTGCGTTT
ACAATGATGGACTTGTCGTTCATGGCGTTAACATTCCTCTACCTTCGTCG
ACGGAAATGTTTCAGGATGGGAGTAATATTTCTTATGCATAGTGCTGCTT
CAGGGCTGACCATATTAAATGACGTTGAGAACGGTTGCACGATGTCGCTG
CCACTCGTGTACGTTGTTATGGTTGCCACCGTCCTTGTAACCTTCCGCGA
GTGGAGACAGCTGAACGAAGACACGTAA
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Synonyms
Publications