EWM25062.1, cds5598 (CDS) Nannochloropsis gaditana

Overview
NameEWM25062.1
Unique Namecds5598
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:406158..406751 +
Alignment locationCM002466.1:406948..407067 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25062.1
Productprotein binding protein
Orig transcript idgnl|cribi|Naga_100098g9.5256.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:406158..406751 +
CM002466.1supercontigCM002466.1:406948..407067 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0019538protein metabolic process
GO:0043085positive regulation of catalytic activity
GO:0016485protein processing
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR009294Aph-1
Homology
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|585106699|gb|EWM25062.1| (protein binding protein [Nannochloropsis gaditana])

HSP 1 Score: 475.322 bits (1222), Expect = 2.071e-169
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFREWRQLNEDT 237
            MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFREWRQLNEDT
Sbjct:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFREWRQLNEDT 237          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|695371956|ref|XP_009514690.1| (hypothetical protein PHYSODRAFT_471038 [Phytophthora sojae] >gi|348687601|gb|EGZ27415.1| hypothetical protein PHYSODRAFT_471038 [Phytophthora sojae])

HSP 1 Score: 161.384 bits (407), Expect = 1.742e-45
Identity = 81/211 (38.39%), Postives = 131/211 (62.09%), Query Frame = 0
Query:    6 LMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            L +G+ L+ F P++ +F +VV +R +LVI+A+SGAF +LVA+L+++ LW +  P+K + +  V +GV+ Q   R + + LY RTE+ +K        +PLNDITSSLA G G+ +MHA+++FGS++ S     G  F+ SC   PLV   A+  LA T +D++ M + F   R+R    +G +F++H   +   + N   NGC +S+P+ Y
Sbjct:   12 LFFGSILVGFGPLAALFFVVVAKRAQLVILALSGAFVWLVAILVTATLWQIIPPLKTSLSATVPVGVVVQEAFRLLFFYLYTRTELAVKRVTTSSHQLPLNDITSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLVFSAAISTLALTALDVALMVVAFDGYRKRSALAVGAVFVIHMGVALSALANMNTNGCYISIPVHY 222          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|1214710176|gb|OWZ21290.1| (putative membrane protein [Phytophthora megakarya])

HSP 1 Score: 157.918 bits (398), Expect = 3.695e-44
Identity = 80/211 (37.91%), Postives = 129/211 (61.14%), Query Frame = 0
Query:    6 LMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            L+ G  L+ F P++ +F +VV +R +LVI+A+SGAF +LVA+L+++ LW +  P+K +    V +GV+ Q   R + + LY RTE+ +K        +PLND+TSSLA G G+ +MHA+++FGS++ S     G  F+ SC   PLV   A+  LA T +D++ M + F   R+R    +G +F++H   +   + N   NGC +S+P+ Y
Sbjct:   12 LLIGCILVGFGPLAALFFVVVAKRAQLVILALSGAFVWLVAILVTATLWQIIPPLKTSLTATVPVGVVVQEAFRMLFFYLYTRTELAVKRVTTSSHQLPLNDMTSSLAGGVGFSVMHALLMFGSLMGSSTGSRGAAFSASCESIPLVFSAAISTLALTALDVALMVIAFDGYRQRSAIAVGAVFVIHMGVALSALANVNTNGCYISIPVHY 222          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|970631001|gb|KUF77773.1| (Gamma-secretase subunit APH1 [Phytophthora nicotianae])

HSP 1 Score: 156.762 bits (395), Expect = 8.854e-44
Identity = 79/211 (37.44%), Postives = 128/211 (60.66%), Query Frame = 0
Query:    6 LMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            L +G  L+ F P++ +F +V+ +R +LVI+A+SGAF +LVA+L+++ LW +  P+K + +  V + V+ Q   R V + LY RTE  +K        +PLNDITSSLA G G+ +MHA+++FGS++ S     G  F+ SC   PL+   A+  LA T +D++ M + F   R+R    +G +F++H   +   + N   NGC +S+P+ Y
Sbjct:   12 LFFGCILVGFGPLAALFFVVIAKRAQLVILALSGAFVWLVAILVTATLWQIIPPLKTSLSATVPVSVVVQEAFRLVFFYLYTRTEQAVKRVTTSSHQLPLNDITSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLIFSAAISTLALTALDVALMVVAFDGYRKRSVLAVGAVFVIHMGVALSALANMETNGCYISIPVHY 222          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|675209997|ref|XP_008913883.1| (hypothetical protein PPTG_17686 [Phytophthora parasitica INRA-310] >gi|566010556|gb|ETI33467.1| hypothetical protein F443_19850 [Phytophthora parasitica P1569] >gi|567948045|gb|ETK73805.1| hypothetical protein L915_19297 [Phytophthora parasitica] >gi|567976718|gb|ETL27234.1| hypothetical protein L916_19193 [Phytophthora parasitica] >gi|568006220|gb|ETL80489.1| hypothetical protein L917_19018 [Phytophthora parasitica] >gi|568036076|gb|ETM33692.1| hypothetical protein L914_19093 [Phytophthora parasitica] >gi|568085933|gb|ETN00832.1| hypothetical protein PPTG_17686 [Phytophthora parasitica INRA-310] >gi|570314279|gb|ETO62227.1| hypothetical protein F444_19836 [Phytophthora parasitica P1976] >gi|570938056|gb|ETP03313.1| hypothetical protein F441_19702 [Phytophthora parasitica CJ01A1] >gi|570968356|gb|ETP31475.1| hypothetical protein F442_19656 [Phytophthora parasitica P10297])

HSP 1 Score: 156.762 bits (395), Expect = 8.854e-44
Identity = 79/211 (37.44%), Postives = 128/211 (60.66%), Query Frame = 0
Query:    6 LMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            L +G  L+ F P++ +F +V+ +R +LVI+A+SGAF +LVA+L+++ LW +  P+K + +  V + V+ Q   R V + LY RTE  +K        +PLNDITSSLA G G+ +MHA+++FGS++ S     G  F+ SC   PL+   A+  LA T +D++ M + F   R+R    +G +F++H   +   + N   NGC +S+P+ Y
Sbjct:   12 LFFGCILVGFGPLAALFFVVIAKRAQLVILALSGAFVWLVAILVTATLWQIIPPLKTSLSATVPVSVVVQEAFRLVFFYLYTRTEQAVKRVTTSSHQLPLNDITSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLIFSAAISTLALTALDVALMVVAFDGYRKRSVLAVGAVFVIHMGVALSALANMETNGCYISIPVHY 222          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|1173949785|gb|OQR97789.1| (hypothetical protein ACHHYP_10010 [Achlya hypogyna])

HSP 1 Score: 155.992 bits (393), Expect = 1.309e-43
Identity = 78/216 (36.11%), Postives = 127/216 (58.80%), Query Frame = 0
Query:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            MA   L WG+ L  F+PI+ +F++VV +R +LVI+ I+ AF YL+ LL+++ +W +  P++ +    + + +L Q V R + + +Y R E+ +K        +PLND+T+S A+G G+ LM A+M++G+VLAS     G  F  +C   PLV   AL  LA T+MD++ M + F   R++    +  + L+H  +    +LN  E GC  S+PL Y
Sbjct:    1 MAEWALFWGSLLTAFAPIAALFLMVVAQRAQLVILCITAAFFYLLGLLVAATVWTVITPLQSSVQATIPIAILLQEVFRYIFFNVYVRCELAVKKVTTKQNQLPLNDLTTSFASGVGFALMRALMLYGTVLASSVQGEGAAFTDTCASVPLVFASALSTLALTIMDVALMIVAFEGFRKKSAPHIAAVVLIHLGSGLSNMLNLNEVGCKASIPLTY 216          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|813135219|ref|XP_012198417.1| (hypothetical protein SPRG_04617 [Saprolegnia parasitica CBS 223.65] >gi|641536844|gb|KDO30715.1| hypothetical protein SPRG_04617 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 155.221 bits (391), Expect = 3.384e-43
Identity = 80/217 (36.87%), Postives = 128/217 (58.99%), Query Frame = 0
Query:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYV 217
            MA   L WG+ L  F+PIS +F+LVV +R +LVI+AI+ AF YL+ LL+++ +W    P++ +    + + +L Q + R + + +Y R E+ +K        +PLND+T++ A+G G+ LM A+M++G+VLA+     G  F  SC   PLV   AL  LA T+MD++ M + F   R++    +  + L+H  +    +LN  E GC  S+PL YV
Sbjct:    1 MAEWVLFWGSLLTAFAPISALFLLVVAQRAQLVILAITAAFFYLLGLLVAATVWTAIPPLQTSIQATIPISILIQELFRYLFFNVYVRCELAVKKVTTKQNQLPLNDLTTAFASGVGFALMRALMLYGTVLAASVQGEGAAFTDSCPSVPLVFASALSTLALTLMDVALMIVAFEGFRKKSVAHIAAVVLIHLGSGLSNMLNLNEVGCKASIPLTYV 217          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|301094294|ref|XP_002896253.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262109648|gb|EEY67700.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 155.221 bits (391), Expect = 3.922e-43
Identity = 79/211 (37.44%), Postives = 127/211 (60.19%), Query Frame = 0
Query:    6 LMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            L +G  L+   P++ +F +VV +R +LVI+A+SGAF +LVA+L+++ LW +  P+K + +  V +GV+ Q   R + + LY RTE  +K        +PLNDITSSLA G G+ +MHA+++FGS++ S     G  F+ SC   PL+   A+  LA T +D++ M + F   R+R    +G +F++H   +   + N   NGC +S+P  Y
Sbjct:   12 LFFGCILVGIGPLAALFFVVVAKRAQLVILALSGAFVWLVAILVTATLWQIIPPLKTSLSATVPVGVVIQEAFRLLFFYLYTRTEQAVKRVTTSSHQLPLNDITSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLIFSAAISTLALTALDVALMVVAFDGYRKRSALAVGAVFVIHMGVALSALANMETNGCYISIPAHY 222          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|669144660|ref|XP_008607892.1| (hypothetical protein SDRG_04021 [Saprolegnia diclina VS20] >gi|530740058|gb|EQC38300.1| hypothetical protein SDRG_04021 [Saprolegnia diclina VS20])

HSP 1 Score: 153.68 bits (387), Expect = 1.208e-42
Identity = 79/216 (36.57%), Postives = 127/216 (58.80%), Query Frame = 0
Query:    1 MAAAGLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVY 216
            MA   L WG+ L  F+PIS +F+LVV +R +LVI+AI+ AF YL+ LL+++ +W    P++ +    + + +L Q + R + + +Y R E+ +K        +PLND+T++ A+G G+ LM A+M++G+VLA+     G  F  SC   PLV   AL  LA T+MD++ M + F   R++    +  + L+H  +    +LN  E GC  S+PL Y
Sbjct:    1 MAEWVLFWGSLLTAFAPISALFLLVVAQRAQLVILAITAAFFYLLGLLVAATVWTAIPPLQTSIQATIPISILIQELFRYLFFNVYVRCELAVKKVTTKQNQLPLNDLTTAFASGVGFALMRALMLYGTVLAASVQGEGAAFTDSCPSVPLVFASALSTLALTLMDVALMIVAFEGFRKKSVAHIAAVVLIHLGSGLSNMLNLNEVGCKASIPLTY 216          
BLAST of EWM25062.1 vs. NCBI_GenBank
Match: gi|673050799|ref|XP_008879360.1| (hypothetical protein H310_13585 [Aphanomyces invadans] >gi|574465021|gb|ETV92063.1| hypothetical protein H310_13585 [Aphanomyces invadans])

HSP 1 Score: 152.91 bits (385), Expect = 2.259e-42
Identity = 81/213 (38.03%), Postives = 126/213 (59.15%), Query Frame = 0
Query:    5 GLMWGAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSANHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYV 217
             L WG  L  F+P+S +F+ VV +R +LVI++I+ AF YL+ LL+++ LW++  P+  +    + + +L Q + R   + +Y R E  +K        +PLND+TSS A+G G+ LM A+M++G+VLAS  +  G  F  +C + PLV   AL  LA T+MD++ M L F   R+R    +  + L+H  +    +LN  E GCT S+PL YV
Sbjct:    5 ALFWGCMLTGFAPVSFLFLTVVAQRAQLVILSITAAFFYLLGLLVAATLWSVIPPLHDSIHATIPVAILVQELFRYAFFVVYIRCEQAVKRVTTKQNQLPLNDLTSSFASGVGFALMRALMLYGTVLASSMAGEGAAFTATCPQIPLVFASALSTLALTLMDIALMILAFEGYRKRSATHIVAVVLLHLGSGLSNMLNLNEVGCTASIPLTYV 217          
The following BLAST results are available for this feature:
BLAST of EWM25062.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106699|gb|EWM25062.1|2.071e-169100.00protein binding protein [Nannochloropsis gaditana][more]
gi|695371956|ref|XP_009514690.1|1.742e-4538.39hypothetical protein PHYSODRAFT_471038 [Phytophtho... [more]
gi|1214710176|gb|OWZ21290.1|3.695e-4437.91putative membrane protein [Phytophthora megakarya][more]
gi|970631001|gb|KUF77773.1|8.854e-4437.44Gamma-secretase subunit APH1 [Phytophthora nicotia... [more]
gi|675209997|ref|XP_008913883.1|8.854e-4437.44hypothetical protein PPTG_17686 [Phytophthora para... [more]
gi|1173949785|gb|OQR97789.1|1.309e-4336.11hypothetical protein ACHHYP_10010 [Achlya hypogyna... [more]
gi|813135219|ref|XP_012198417.1|3.384e-4336.87hypothetical protein SPRG_04617 [Saprolegnia paras... [more]
gi|301094294|ref|XP_002896253.1|3.922e-4337.44conserved hypothetical protein [Phytophthora infes... [more]
gi|669144660|ref|XP_008607892.1|1.208e-4236.57hypothetical protein SDRG_04021 [Saprolegnia dicli... [more]
gi|673050799|ref|XP_008879360.1|2.259e-4238.03hypothetical protein H310_13585 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5612rna5612Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications