rna5611, rna5611 (mRNA) Nannochloropsis gaditana

Overview
Namerna5611
Unique Namerna5611
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length627
Alignment locationCM002466.1:405112..405833 -

Link to JBrowse

Properties
Property NameValue
ProductDynein light chain
Orig transcript idgnl|cribi|Naga_100098g8.5274.mrna
Orig protein idgnl|cribi|Naga_100098g8.5274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:405112..405833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g8gene5423Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5611rna5611-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25080.1cds5597Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5611 ID=rna5611|Name=rna5611|organism=Nannochloropsis gaditana|type=mRNA|length=627bp
ATGCAGCGCAGCAGAGTGAGAATTGGGGAGCAGTCATCATCTCAGAGCTG
TTTTTTTTTTACGTCCCTGTGCCTATTTCCGTCTCGAGGGACATTACTGG
TTGAGGGGATCATGACAACATACGTTCGAGTAACGGATAGCAAGCTAGAT
TTAAACACGCTGATAATGAAGGTTGAAGATACAGGAGCGGGCGCCATTGC
CACCTTTTTGGGAGTGACGAGGGACAACTTCCAAGGGAAGCGCGTGGTCC
GTCTCGACTACGAAGGTTACGTGCCCATGGCAGAAAACGTTATGCACAGC
ATTGCCTCTGAGGTCAGGTCACGGTGGGAGGTACTTTCAATCGCCATGGA
GCATAGGATTGGAGTCTGTCCCGTCGGGGAGCCTAGCGTAGTAATTGCCA
TCTCATCTGCCCACCGTCGTGAGGCGTTGGAAGCGGTTGCCTTCGCCATA
GATTCTATCAAGGGCAATGTGCCGATCTGGAAGAAAGAAATCTACGCCGA
CGGTAGTTACCATCGCGGGCCTGATGGGTCAAGCGTGGAGTGTGGAGGAA
GCCCCGTTGTAAAAAGTGCGTGGAAAAAAAATGTAGAGTGGGAGGGAGGC
GACGAAAATATAAGTAAAAGATCTTGA
back to top

protein sequence of rna5611

>rna5611-protein ID=rna5611-protein|Name=rna5611|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRA
VQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFT
LAVVQNQTHHFPQASINRSGHANGKKA
back to top

mRNA from alignment at CM002466.1:405112..405833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5611 ID=rna5611|Name=rna5611|organism=Nannochloropsis gaditana|type=mRNA|length=722bp|location=Sequence derived from alignment at CM002466.1:405112..405833- (Nannochloropsis gaditana)
ATGAAGCCTGTAAGTTAAAATGTCAAGCCCCGCCTTTCTTTCTTTCTTCT
TTTTTACAAAGTTGGTTATCTCTTGCGCCGAATGATGATTTAACGTCTAT
GCAGGGCACTACGCCAACCCAAGCCATGAGTGAGGTGGACGTCATCCTTC
GAGATCTGAAAGCGCAGCCCGGCTTTTCCTCCTACATGATAATGAACAAC
GATGGTGAGTTGCGTTTTGCCTGCCTTTACGAGCAATCACCGACACATAG
TCCAATTTAGGAATCGTCATAAAATACGAGAATAATGTCCTGCCTTTACG
AGCAATCACTGACACATAGTCCAATTTAGGAATCGTCATAAAATACGAGA
ATATTGAGTACAAGCGCGCGGTGCAGATTGCTCATTTGGTGCTAGACTTA
GCCTCCAAAGCAAAGCGCGCAGCCCGAAATCTTTTGGAATCTCCAGAGGT
ATGGTATCAATGGTCGAACATGCATTCGCACACATACACACATACACACA
TACATACATATATACATACAGCAGTAGAAAAAATTCGACCTCAATTTCTT
CACTTCCACCCCTCAGAATGAAGTAGAGTCTATTCGACTCAAAAGCAGGG
ACTACGAGCTGATCGTTGGGCAAAGTGGAAACTTCACGTTGGCAGTGGTA
CAAAATCAGACCCATCATTTTCCACAAGCATCTATCAATAGAAGTGGCCA
CGCCAATGGCAAGAAAGCATGA
back to top

Coding sequence (CDS) from alignment at CM002466.1:405112..405833-

>rna5611 ID=rna5611|Name=rna5611|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at CM002466.1:405112..405833- (Nannochloropsis gaditana)
AATGAAGTAGAGTCTATTCGACTCAAAAGCAGGGACTACGAGCTGATCGT
TGGGCAAAGTGGAAACTTCACGTTGGCAGTGGTACAAAATCAGACCCATC
ATTTTCCACAAGCATCTATCAATAGAAGTGGCCACGCCAATGGCAAGAAA
GCATGAGAATCGTCATAAAATACGAGAATATTGAGTACAAGCGCGCGGTG
CAGATTGCTCATTTGGTGCTAGACTTAGCCTCCAAAGCAAAGCGCGCAGC
CCGAAATCTTTTGGAATCTCCAGAGGGCACTACGCCAACCCAAGCCATGA
GTGAGGTGGACGTCATCCTTCGAGATCTGAAAGCGCAGCCCGGCTTTTCC
TCCTACATGATAATGAACAACGATGATGAAGCCTAATGAAGTAGAGTCTA
TTCGACTCAAAAGCAGGGACTACGAGCTGATCGTTGGGCAAAGTGGAAAC
TTCACGTTGGCAGTGGTACAAAATCAGACCCATCATTTTCCACAAGCATC
TATCAATAGAAGTGGCCACGCCAATGGCAAGAAAGCATGAGAATCGTCAT
AAAATACGAGAATATTGAGTACAAGCGCGCGGTGCAGATTGCTCATTTGG
TGCTAGACTTAGCCTCCAAAGCAAAGCGCGCAGCCCGAAATCTTTTGGAA
TCTCCAGAGGGCACTACGCCAACCCAAGCCATGAGTGAGGTGGACGTCAT
CCTTCGAGATCTGAAAGCGCAGCCCGGCTTTTCCTCCTACATGATAATGA
ACAACGATGATGAAGCCTAATGAAGTAGAGTCTATTCGACTCAAAAGCAG
GGACTACGAGCTGATCGTTGGGCAAAGTGGAAACTTCACGTTGGCAGTGG
TACAAAATCAGACCCATCATTTTCCACAAGCATCTATCAATAGAAGTGGC
CACGCCAATGGCAAGAAAGCATGAGAATCGTCATAAAATACGAGAATATT
GAGTACAAGCGCGCGGTGCAGATTGCTCATTTGGTGCTAGACTTAGCCTC
CAAAGCAAAGCGCGCAGCCCGAAATCTTTTGGAATCTCCAGAGGGCACTA
CGCCAACCCAAGCCATGAGTGAGGTGGACGTCATCCTTCGAGATCTGAAA
GCGCAGCCCGGCTTTTCCTCCTACATGATAATGAACAACGATGATGAAGC
CTAATGAAGTAGAGTCTATTCGACTCAAAAGCAGGGACTACGAGCTGATC
GTTGGGCAAAGTGGAAACTTCACGTTGGCAGTGGTACAAAATCAGACCCA
TCATTTTCCACAAGCATCTATCAATAGAAGTGGCCACGCCAATGGCAAGA
AAGCATGAGAATCGTCATAAAATACGAGAATATTGAGTACAAGCGCGCGG
TGCAGATTGCTCATTTGGTGCTAGACTTAGCCTCCAAAGCAAAGCGCGCA
GCCCGAAATCTTTTGGAATCTCCAGAGGGCACTACGCCAACCCAAGCCAT
GAGTGAGGTGGACGTCATCCTTCGAGATCTGAAAGCGCAGCCCGGCTTTT
CCTCCTACATGATAATGAACAACGATGATGAAGCCT
back to top
Synonyms
Publications