EWM25080.1, cds5597 (CDS) Nannochloropsis gaditana

Overview
NameEWM25080.1
Unique Namecds5597
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:405825..405833 -
Alignment locationCM002466.1:405630..405729 -
Alignment locationCM002466.1:405386..405504 -
Alignment locationCM002466.1:405112..405267 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25080.1
ProductDynein light chain
Orig transcript idgnl|cribi|Naga_100098g8.5274.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:405825..405833 -
CM002466.1supercontigCM002466.1:405630..405729 -
CM002466.1supercontigCM002466.1:405386..405504 -
CM002466.1supercontigCM002466.1:405112..405267 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR004942Dynein_light-rel
Homology
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|585106717|gb|EWM25080.1| (Dynein light chain [Nannochloropsis gaditana])

HSP 1 Score: 264.233 bits (674), Expect = 1.379e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127
            MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA
Sbjct:    1 MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|299116847|emb|CBN74959.1| (hypothetical protein Esi_0060_0081 [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 1.010e-31
Identity = 54/98 (55.10%), Postives = 79/98 (80.61%), Query Frame = 0
Query:    8 TQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            +Q ++EV+ ++++LK  PGFS+Y+IMNNDGIVIKYE++EY+ AV  A LVLDLASK+K+  R L E P+N+VES+RL++ ++E+I+    +FTL VVQ
Sbjct:    3 SQQVNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1173934932|gb|OQR86132.1| (hypothetical protein ACHHYP_10933 [Achlya hypogyna])

HSP 1 Score: 103.99 bits (258), Expect = 3.124e-26
Identity = 47/96 (48.96%), Postives = 73/96 (76.04%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L E+ E+E+E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLAKLFEAAESEIECLRLRTKLHEMIIAQYSKFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|669143026|ref|XP_008607075.1| (hypothetical protein SDRG_03226 [Saprolegnia diclina VS20] >gi|530741561|gb|EQC39803.1| hypothetical protein SDRG_03226 [Saprolegnia diclina VS20])

HSP 1 Score: 101.293 bits (251), Expect = 3.743e-25
Identity = 45/96 (46.88%), Postives = 73/96 (76.04%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L ++ E+++E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYAKFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|673019532|ref|XP_008863727.1| (hypothetical protein H310_02104 [Aphanomyces invadans] >gi|574480641|gb|ETW07634.1| hypothetical protein H310_02104 [Aphanomyces invadans])

HSP 1 Score: 100.908 bits (250), Expect = 5.296e-25
Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LK++PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L ++ E E+E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKSKPGFFSYIVMNNDGIVIKYENMEYKSAVMHAYHILNLYARSKKHLSKLFDASECEIECLRLRTKLHEMIIAQYTRFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1173960320|gb|OQS06460.1| (hypothetical protein THRCLA_20371 [Thraustotheca clavata])

HSP 1 Score: 100.523 bits (249), Expect = 6.666e-25
Identity = 45/96 (46.88%), Postives = 73/96 (76.04%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L ++ E+++E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYSKFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1214702765|gb|OWZ14897.1| (hypothetical protein PHMEG_00011544 [Phytophthora megakarya])

HSP 1 Score: 100.908 bits (250), Expect = 6.960e-25
Identity = 45/97 (46.39%), Postives = 72/97 (74.23%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESP-ENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+ +++ LK +PGFSSY++MNNDGIV+KYEN+EYK A+  A+ VL L S+ K+  + L   P ++E+E +RL+++ +E+++ Q   FTL V+Q
Sbjct:    5 APNEVEEVIKQLKTKPGFSSYILMNNDGIVVKYENVEYKEAIMYAYHVLSLYSRTKKHLQKLFPDPTDSEIEWLRLRTKMHEMVIAQHLRFTLVVLQ 101          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|813117788|ref|XP_012195751.1| (hypothetical protein SPRG_19341 [Saprolegnia parasitica CBS 223.65] >gi|641539936|gb|KDO33731.1| hypothetical protein SPRG_19341 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 100.523 bits (249), Expect = 8.109e-25
Identity = 44/96 (45.83%), Postives = 73/96 (76.04%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L ++ E+++E +RL+++ +E+++ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMLIAQYAKFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|698783351|ref|XP_009824719.1| (hypothetical protein H257_02673 [Aphanomyces astaci] >gi|574120769|gb|ETV86247.1| hypothetical protein H257_02673 [Aphanomyces astaci])

HSP 1 Score: 100.138 bits (248), Expect = 1.007e-24
Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+  ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV  A+ +L+L +++K+    L ++ E ++E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKSAVMHAYHILNLYARSKKHLSKLFDASECDIECLRLRTKLHEMIIAQYTRFTLVVLQ 100          
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|301093433|ref|XP_002997563.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110581|gb|EEY68633.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 99.3673 bits (246), Expect = 2.608e-24
Identity = 46/97 (47.42%), Postives = 71/97 (73.20%), Query Frame = 0
Query:   10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESP-ENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
            A +EV+ +++ LK++PGFSSY++MNNDGIV+KYEN+EYK A+  A+ VL L  + K+    L   P E+E+E +RL+++ +E+I+ Q   FTL V+Q
Sbjct:    5 APNEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLYKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQ 101          
The following BLAST results are available for this feature:
BLAST of EWM25080.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106717|gb|EWM25080.1|1.379e-89100.00Dynein light chain [Nannochloropsis gaditana][more]
gi|299116847|emb|CBN74959.1|1.010e-3155.10hypothetical protein Esi_0060_0081 [Ectocarpus sil... [more]
gi|1173934932|gb|OQR86132.1|3.124e-2648.96hypothetical protein ACHHYP_10933 [Achlya hypogyna... [more]
gi|669143026|ref|XP_008607075.1|3.743e-2546.88hypothetical protein SDRG_03226 [Saprolegnia dicli... [more]
gi|673019532|ref|XP_008863727.1|5.296e-2546.88hypothetical protein H310_02104 [Aphanomyces invad... [more]
gi|1173960320|gb|OQS06460.1|6.666e-2546.88hypothetical protein THRCLA_20371 [Thraustotheca c... [more]
gi|1214702765|gb|OWZ14897.1|6.960e-2546.39hypothetical protein PHMEG_00011544 [Phytophthora ... [more]
gi|813117788|ref|XP_012195751.1|8.109e-2545.83hypothetical protein SPRG_19341 [Saprolegnia paras... [more]
gi|698783351|ref|XP_009824719.1|1.007e-2446.88hypothetical protein H257_02673 [Aphanomyces astac... [more]
gi|301093433|ref|XP_002997563.1|2.608e-2447.42conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5611rna5611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications