EWM25080.1, cds5597 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|585106717|gb|EWM25080.1| (Dynein light chain [Nannochloropsis gaditana]) HSP 1 Score: 264.233 bits (674), Expect = 1.379e-89 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127
MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA
Sbjct: 1 MKPGTTPTQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQNQTHHFPQASINRSGHANGKKA 127
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|299116847|emb|CBN74959.1| (hypothetical protein Esi_0060_0081 [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 1.010e-31 Identity = 54/98 (55.10%), Postives = 79/98 (80.61%), Query Frame = 0
Query: 8 TQAMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
+Q ++EV+ ++++LK PGFS+Y+IMNNDGIVIKYE++EY+ AV A LVLDLASK+K+ R L E P+N+VES+RL++ ++E+I+ +FTL VVQ
Sbjct: 3 SQQVNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1173934932|gb|OQR86132.1| (hypothetical protein ACHHYP_10933 [Achlya hypogyna]) HSP 1 Score: 103.99 bits (258), Expect = 3.124e-26 Identity = 47/96 (48.96%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L E+ E+E+E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLAKLFEAAESEIECLRLRTKLHEMIIAQYSKFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|669143026|ref|XP_008607075.1| (hypothetical protein SDRG_03226 [Saprolegnia diclina VS20] >gi|530741561|gb|EQC39803.1| hypothetical protein SDRG_03226 [Saprolegnia diclina VS20]) HSP 1 Score: 101.293 bits (251), Expect = 3.743e-25 Identity = 45/96 (46.88%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L ++ E+++E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYAKFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|673019532|ref|XP_008863727.1| (hypothetical protein H310_02104 [Aphanomyces invadans] >gi|574480641|gb|ETW07634.1| hypothetical protein H310_02104 [Aphanomyces invadans]) HSP 1 Score: 100.908 bits (250), Expect = 5.296e-25 Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LK++PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L ++ E E+E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKSKPGFFSYIVMNNDGIVIKYENMEYKSAVMHAYHILNLYARSKKHLSKLFDASECEIECLRLRTKLHEMIIAQYTRFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1173960320|gb|OQS06460.1| (hypothetical protein THRCLA_20371 [Thraustotheca clavata]) HSP 1 Score: 100.523 bits (249), Expect = 6.666e-25 Identity = 45/96 (46.88%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L ++ E+++E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYSKFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|1214702765|gb|OWZ14897.1| (hypothetical protein PHMEG_00011544 [Phytophthora megakarya]) HSP 1 Score: 100.908 bits (250), Expect = 6.960e-25 Identity = 45/97 (46.39%), Postives = 72/97 (74.23%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESP-ENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ +++ LK +PGFSSY++MNNDGIV+KYEN+EYK A+ A+ VL L S+ K+ + L P ++E+E +RL+++ +E+++ Q FTL V+Q
Sbjct: 5 APNEVEEVIKQLKTKPGFSSYILMNNDGIVVKYENVEYKEAIMYAYHVLSLYSRTKKHLQKLFPDPTDSEIEWLRLRTKMHEMVIAQHLRFTLVVLQ 101
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|813117788|ref|XP_012195751.1| (hypothetical protein SPRG_19341 [Saprolegnia parasitica CBS 223.65] >gi|641539936|gb|KDO33731.1| hypothetical protein SPRG_19341 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 100.523 bits (249), Expect = 8.109e-25 Identity = 44/96 (45.83%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L ++ E+++E +RL+++ +E+++ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMLIAQYAKFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|698783351|ref|XP_009824719.1| (hypothetical protein H257_02673 [Aphanomyces astaci] >gi|574120769|gb|ETV86247.1| hypothetical protein H257_02673 [Aphanomyces astaci]) HSP 1 Score: 100.138 bits (248), Expect = 1.007e-24 Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESPENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ ++ LKA+PGF SY++MNNDGIVIKYEN+EYK AV A+ +L+L +++K+ L ++ E ++E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKSAVMHAYHILNLYARSKKHLSKLFDASECDIECLRLRTKLHEMIIAQYTRFTLVVLQ 100
BLAST of EWM25080.1 vs. NCBI_GenBank
Match: gi|301093433|ref|XP_002997563.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110581|gb|EEY68633.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 99.3673 bits (246), Expect = 2.608e-24 Identity = 46/97 (47.42%), Postives = 71/97 (73.20%), Query Frame = 0
Query: 10 AMSEVDVILRDLKAQPGFSSYMIMNNDGIVIKYENIEYKRAVQIAHLVLDLASKAKRAARNLLESP-ENEVESIRLKSRDYELIVGQSGNFTLAVVQ 105
A +EV+ +++ LK++PGFSSY++MNNDGIV+KYEN+EYK A+ A+ VL L + K+ L P E+E+E +RL+++ +E+I+ Q FTL V+Q
Sbjct: 5 APNEVEEVIKQLKSKPGFSSYILMNNDGIVVKYENLEYKEAIMHAYHVLSLYGRTKKHLYKLFPDPNESEIEWLRLRTKMHEMIIAQHLRFTLVVLQ 101 The following BLAST results are available for this feature:
BLAST of EWM25080.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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