rna5610, rna5610 (mRNA) Nannochloropsis gaditana

Overview
Namerna5610
Unique Namerna5610
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationCM002466.1:404193..405023 +

Link to JBrowse

Properties
Property NameValue
Productmolybdenum cofactor synthesis isoform cra_a
Orig transcript idgnl|cribi|Naga_100098g7.5275.mrna
Orig protein idgnl|cribi|Naga_100098g7.5275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:404193..405023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g7gene5422Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5610rna5610-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25081.1cds5596Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5610 ID=rna5610|Name=rna5610|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGCCCGCTGATCCTCGCAACTTGATGCCCGCTTCTCGACAGTACTGGCG
CCGACTTTCGTGTCTTCAAATTGCTGTCTGGAACGACTTATTGGAGGGCA
CATTTGCAAAAGACCTGATAAAAATCAATACTGAAAAGTCCGAGGGAGAT
GTCTGCTACCACTCGTTCTCGTCTAATGAGAGACTAAATGGAGAAAAGGG
CAGGTTGAGACGAGGAGACGACCACATTGTGCTTTACGAAATCGGCATGC
AGCGTCCCGGTCAACCAGGTCGTTGTCGCACCTTCCCTTCTAATGCAGAG
AAGGTGTCGAAGGCTTGTGGGCCACTTTACAAAAAAGTAAAAAGCTTAGG
CTAG
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protein sequence of rna5610

>rna5610-protein ID=rna5610-protein|Name=rna5610|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MQRSRVRIGEQSSSQSCFFFTSLCLFPSRGTLLVEGIMTTYVRVTDSKLD
LNTLIMKVEDTGAGAIATFLGVTRDNFQGKRVVRLDYEGYVPMAENVMHS
IASEVRSRWEVLSIAMEHRIGVCPVGEPSVVIAISSAHRREALEAVAFAI
DSIKGNVPIWKKEIYADGSYHRGPDGSSVECGGSPVVKSAWKKNVEWEGG
DENISKRS
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mRNA from alignment at CM002466.1:404193..405023+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5610 ID=rna5610|Name=rna5610|organism=Nannochloropsis gaditana|type=mRNA|length=831bp|location=Sequence derived from alignment at CM002466.1:404193..405023+ (Nannochloropsis gaditana)
ATGCAGCGCAGCAGAGTGAGAATTGGGGAGCAGTCATCATCTCAGAGCTG
TTTTTTTTTGTTCTTTCTTTTAAAGGAATTGGATGCGACTTTGGCTACAT
GATAGTGCAATCAGTGTGTCTGAAAACCATGGTGTTCTTAATTTTTTTAA
TGTCGTCCTCAATCGTTTTCGCTTCTCAGTACGTCCCTGTGCCTATTTCC
GTCTCGAGGGACATTACTGGTTGAGGGGATCATGACAACATACGTTCGAG
TAACGGATAGCAAGCTAGATTTAAACACGCTGATAATGAAGGTTGAAGAT
ACAGGAGCGGGCGCCATTGCCACCTTTTTGGGAGTGACGAGGGACAACTT
CCAAGGGAAGCGCGTGGTCCGTCTCGACTACGAAGGTTACGTGCCCATGG
CAGAAAACGTTATGCACAGCATTGCCTCTGAGGTAAGCGTTACTCTTTGT
TCTGACGCAGCATTTAAGTCATGAGGTCGGCTCGATACTAATAACCTTCA
CAATCACAAAACTTAGGTCAGGTCACGGTGGGAGGTACTTTCAATCGCCA
TGGAGCATAGGATTGGAGTCTGTCCCGTCGGGGAGCCTAGCGTAGTAATT
GCCATCTCATCTGCCCACCGTCGTGAGGCGTTGGAAGCGGTTGCCTTCGC
CATAGATTCTATCAAGGGCAATGTGCCGATCTGGAAGAAAGAAATCTACG
CCGACGGTAGTTACCATCGCGGGCCTGATGGGTCAAGCGTGGAGTGTGGA
GGAAGCCCCGTTGTAAAAAGTgcgtggaaaaaaaatgtagagtgggaggg
aggcgacgaaAATATAAGTAAAAGATCTTGA
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Coding sequence (CDS) from alignment at CM002466.1:404193..405023+

>rna5610 ID=rna5610|Name=rna5610|organism=Nannochloropsis gaditana|type=CDS|length=1881bp|location=Sequence derived from alignment at CM002466.1:404193..405023+ (Nannochloropsis gaditana)
ATGCAGCGCAGCAGAGTGAGAATTGGGGAGCAGTCATCATCTCAGAGCTG
TTTTTTTTTTACGTCCCTGTGCCTATTTCCGTCTCGAGGGACATTACTGG
TTGAGGGGATCATGACAACATACGTTCGAGTAACGGATAGCAAGCTAGAT
TTAAACACGCTGATAATGAAGGTTGAAGATACAGGAGCGGGCGCCATTGC
CACCTTTTTGGGAGTGACGAGGGACAACTTCCAAGGGAAGCGCGTGGTCC
GTCTCGACTACGAAGGTTACGTGCCCATGGCAGAAAACGTTATGCACAGC
ATTGCCTCTGAGGTCAGGTCACGGTGGGAGGTACTTTCAATCGCCATGGA
GCATAGGATTGGAGTCTGTCCCGTCGGGGAGCCTAGCGTAGTAATTGCCA
TCTCATCTGCCCACCGTCGTGAGGCGTTGGAAGCGGTTGCCTTCGCCATA
GATTCTATCAAGGGCAATGTGCCGATCTGGAAGAAAGAAATCTACGCCGA
CGGTAGTTACCATCGCGGGCCTGATGGGTCAAGCGTGGAGTGTGGAGGAA
GCCCCGTTGTAAAAAGTgcgtggaaaaaaaatgtagagtgggagggaggc
gacgaaAATATAAGTAAAAGATCTTGAATGCAGCGCAGCAGAGTGAGAAT
TGGGGAGCAGTCATCATCTCAGAGCTGTTTTTTTTTTACGTCCCTGTGCC
TATTTCCGTCTCGAGGGACATTACTGGTTGAGGGGATCATGACAACATAC
GTTCGAGTAACGGATAGCAAGCTAGATTTAAACACGCTGATAATGAAGGT
TGAAGATACAGGAGCGGGCGCCATTGCCACCTTTTTGGGAGTGACGAGGG
ACAACTTCCAAGGGAAGCGCGTGGTCCGTCTCGACTACGAAGGTTACGTG
CCCATGGCAGAAAACGTTATGCACAGCATTGCCTCTGAGGTCAGGTCACG
GTGGGAGGTACTTTCAATCGCCATGGAGCATAGGATTGGAGTCTGTCCCG
TCGGGGAGCCTAGCGTAGTAATTGCCATCTCATCTGCCCACCGTCGTGAG
GCGTTGGAAGCGGTTGCCTTCGCCATAGATTCTATCAAGGGCAATGTGCC
GATCTGGAAGAAAGAAATCTACGCCGACGGTAGTTACCATCGCGGGCCTG
ATGGGTCAAGCGTGGAGTGTGGAGGAAGCCCCGTTGTAAAAAGTgcgtgg
aaaaaaaatgtagagtgggagggaggcgacgaaAATATAAGTAAAAGATC
TTGAATGCAGCGCAGCAGAGTGAGAATTGGGGAGCAGTCATCATCTCAGA
GCTGTTTTTTTTTTACGTCCCTGTGCCTATTTCCGTCTCGAGGGACATTA
CTGGTTGAGGGGATCATGACAACATACGTTCGAGTAACGGATAGCAAGCT
AGATTTAAACACGCTGATAATGAAGGTTGAAGATACAGGAGCGGGCGCCA
TTGCCACCTTTTTGGGAGTGACGAGGGACAACTTCCAAGGGAAGCGCGTG
GTCCGTCTCGACTACGAAGGTTACGTGCCCATGGCAGAAAACGTTATGCA
CAGCATTGCCTCTGAGGTCAGGTCACGGTGGGAGGTACTTTCAATCGCCA
TGGAGCATAGGATTGGAGTCTGTCCCGTCGGGGAGCCTAGCGTAGTAATT
GCCATCTCATCTGCCCACCGTCGTGAGGCGTTGGAAGCGGTTGCCTTCGC
CATAGATTCTATCAAGGGCAATGTGCCGATCTGGAAGAAAGAAATCTACG
CCGACGGTAGTTACCATCGCGGGCCTGATGGGTCAAGCGTGGAGTGTGGA
GGAAGCCCCGTTGTAAAAAGTgcgtggaaaaaaaatgtagagtgggaggg
aggcgacgaaAATATAAGTAAAAGATCTTGA
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Synonyms
Publications