rna561, rna561 (mRNA) Nannochloropsis gaditana

Overview
Namerna561
Unique Namerna561
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1486
Alignment locationCM002455.1:1387793..1388586 -

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Properties
Property NameValue
Productfad synthetase
Orig transcript idgnl|cribi|Naga_100310g1.1345.mrna
Orig protein idgnl|cribi|Naga_100310g1.1345
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1387793..1388586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100310g1gene540Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30110.1cds561Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna561rna561-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna561 ID=rna561|Name=rna561|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp
ATGCTCGACCGCTCGATAGTGGAAAGCGAGCACCTGGAACCTTCGTCACC
CGGTTGGCCCGTTTTTCTCCGAGTCAACCCCCTTCTCACGTGGGATTACG
GACAGATCTGGGACTTTTTACGTCGATTTTCCCTCCCGTACTGCCGATTG
TACGACGAGGGATACACCTCCCTGGGGGACACGCGGACCACCGTCCGCAA
TCCGGCGTTACGCAGATTGGAGGGGGGATACCGGCCCGCGTACGCCTTGG
AAAACTGGACATTGGAACGGGCGAACCGACGGGTGGCAGACAGGAAGGAG
GACGCGATGGAGGAAGAGAAGGGGCGTGACGCAGACGGTCAGGTGGATGA
CGTGCGGGTAAAGAGGCGGGAGGCAGGGTGGGAGGGAGCCTTGTCAAGCC
CGTCCCTTGTAATGAGGGAGGAAGAACCCACGGGAAGAGGGAGGAAGGAC
GAGGTAGGGAAAACGCTGGAGGAGGAGGAGGAGCTCTTGCAGCGGCACGA
GGACACTAGGAACAAACATCCTTACCCGACAGGCCAGCATACTCACCAGA
GCCAAGGCACCCTCCGTGCACGCAGTTTCTGAACGTGCGCTTGCCGTGTG
ATGAGGAGCTTGCCTCGGATAGGGTCGTCCCTTTTCCTTCCCCCCCGCCC
CTTCGGTCCTCTTTTGTCCCTCTCCGTGCTCTCCTCGAATTCTTCTGCCA
TCATCTCTTGGCCGTCGGTTGGATGCAAACGTTTACATTCCTACAATTGT
TTTCTCAATCAGGCACGATCCAAGCCTGTGTTCGACAGCTGTCATCCTTT
GCCGGCATGGCCCGAGAACCGCCCTGCAGCAAGAGCGATAATGTTGGACA
GGGCAGCAAGCAGAGCATTGAAAAAGCCGAGGATCGCCGAGGCTTTCGCG
CGGCCGTTCACGCCTGGGCCGAGGAAGAGACGCGGGTCGACAAGCAAGAA
TGACCCGATGTGAGCATGTTGGAAGTTAGAGGTGAGGCATGCGCCCGATA
CAGAAATTGGAAGGGGAGAGACATGGGCATTTTTCCGCGAATAAATCGGA
ATTTTCTGGCATGGTGGGCGGTGCCATCTCTCCAGTCTGGGCGCGTGTAA
ATCCAAGGGAGATGGCGTCATTACCTTGACCTTCCTCGACGTGGTTCGCT
TTCTCATTTACCTTCCGCGCGGGCACGTATGTGTACTACTTTCACGCAGT
TTCTGTGGGAGCTGCCACAGAGCAGAATATAAGGCCATCCTCGATAGCAG
TTGTACTTTTTCTTCTGGATCAGTCTTGTAAAATTTGGCCTGTCATATAC
TTCCTCTGTAAATCGCGCCCTGTGAAGTATCCATATCTGCATTTTGAACG
GCTTTAAATGAAAAAGTGTTATCATATCTAAAGTAACAGGCATCTGAGTT
GTATCGCAAAGTAATAGTACCTCACCGAACGCGAAAACCTCATTCTGTAC
TTCACTTTATTTTCCTTTTTTATACTTTACAAGTCA
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protein sequence of rna561

>rna561-protein ID=rna561-protein|Name=rna561|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MDSLQAFVSQPLKGSAANPHNEALQGQIQRALDLICTVLTLFPLEMLALT
FNGGKDACVVFHLVRLALRLRGVAEGEASGRLKVLYFSPEHGDFPEVISF
MAKISEDYHVTYTTYPAGTSFKDGMRDLVEKQGLKAVFLGVRRGDPHSCA
WKRGGETEG
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mRNA from alignment at CM002455.1:1387793..1388586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna561 ID=rna561|Name=rna561|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at CM002455.1:1387793..1388586- (Nannochloropsis gaditana)
GCTCCTTAAAATATGCCGTTTCCAGCTGGCACACCAAAGAGGAGAGAGAA
GGGCCAGGGCTGGTGGAACACGCAGGGAAGAATCCGCCAGATGCGTGTCA
GTGTGGAATTCGTGACTGGCTGTTCGGAAGCAAGTAATGCTGATGTTTTT
TTCTCTCTCGTTCTTCAGGTTTGCTGACATTGCTGCAACCATCCCAAGTG
AGTACGTCGAGAAGGACTGGCTCCCTCCATTGAAGTGTCCACATTAACCA
TACCAAATTGGTCTTTTTAAATAAAATTGAAAAGATCAGAGAAATACAAG
GAGACCTCTGCACACAATATGGATTCGCTCCAGGCCTTTGTTTCCCAACC
TTTGAAGGGCTCAGCTGCCAACCCTCACAACGAGGCTTTGCAAGGGCAGA
TTCAGCGTGCGCTTGACTTGATCTGTACGGTCCTAACTCTTTTCCCCCTC
GAAATGCTGGCGCTGACGTTCAACGGAGGAAAAGATGCCTGCGTGGTTTT
TCATTTGGTGCGACTAGCGCTACGGTTGCGAGGCGTGGCAGAAGGAGAGG
CTAGCGGGCGACTGAAAGTCCTTTACTTCTCGCCCGAACACGGGGATTTT
CCAGAAGTAATCTCGTTCATGGCCAAAATATCCGAAGACTATCATGTCAC
GTACACGACCTACCCCGCGGGGACCTCTTTCAAGGACGGGATGCGGGACC
TGGTGGAGAAACAAGGATTGAAAGCCGTCTTCCTGGGCGTCCGGCGGGGT
GACCCCCATTCGTGTGCGTGGAAGAGGGGGGGAGAGACGGAAGG
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Coding sequence (CDS) from alignment at CM002455.1:1387793..1388586-

>rna561 ID=rna561|Name=rna561|organism=Nannochloropsis gaditana|type=CDS|length=476bp|location=Sequence derived from alignment at CM002455.1:1387793..1388586- (Nannochloropsis gaditana)
ATGGATTCGCTCCAGGCCTTTGTTTCCCAACCTTTGAAGGGCTCAGCTGC
CAACCCTCACAACGAGGCTTTGCAAGGGCAGATTCAGCGTGCGCTTGACT
TGATCTGTACGGTCCTAACTCTTTTCCCCCTCGAAATGCTGGCGCTGACG
TTCAACGGAGGAAAAGATGCCTGCGTGGTTTTTCATTTGGTGCGACTAGC
GCTACGGTTGCGAGGCGTGGCAGAAGGAGAGGCTAGCGGGCGACTGAAAG
TCCTTTACTTCTCGCCCGAACACGGGGATTTTCCAGAAGTAATCTCGTTC
ATGGCCAAAATATCCGAAGACTATCATGTCACGTACACGACCTACCCCGC
GGGGACCTCTTTCAAGGACGGGATGCGGGACCTGGTGGAGAAACAAGGAT
TGAAAGCCGTCTTCCTGGGCGTCCGGCGGGGTGACCCCCATTCGTGTGCG
TGGAAGAGGGGGGGAGAGACGGAAGG
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Synonyms
Publications