rna5605, rna5605 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5605
Unique Name	rna5605
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	399
Alignment location	CM002466.1:390448..391882 +

Link to JBrowse

Properties


Property Name	Value
Product	Nse1 non-SMC component of SMC5-6 complex
Orig transcript id	gnl\|cribi\|Naga_100098g2.5262.mrna
Orig protein id	gnl\|cribi\|Naga_100098g2.5262
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:390448..391882 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100098g2	gene5417	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5605	rna5605-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25068.1	cds5591	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:390448..391882+
coding sequence from alignment at CM002466.1:390448..391882+

mRNA sequence

>rna5605 ID=rna5605|Name=rna5605|organism=Nannochloropsis gaditana|type=mRNA|length=399bp
ATGAGTGCGCTTGCCGCGTTGCGGGCCGAGGGGCCATTTCCGCCCGACAT
CTTGCTGGAAATTAAAAATAGCCCGGGGAACAACCAGTGCTGTGATTGCG
GCTCCTTTGACACGGAATGGGCGAGCGTCACGTACGGCATCCTCATCTGC
TTGCGCTGCTCCGGATTCCACCGTTCCCTGGGCGTGAGCGTAAGCTTTGT
CCGCTCCCTGTCTCTGGACTCCTGGACCCCAAAGCAAGTCTTCGCCATGC
GCCTGGGCTCGAACTTCCAGATGCAAGAGTTTTTTCGTCGGCAACGGATC
TCCAACACGGACATCCGCGTCCGGTACCAGTCCAAAGCGGCGGGGGTGTA
TCGAAGCACCCTGGCCGAGGCTGTGGAGAAGGGCTGGGACGGGGGCTAA

protein sequence of rna5605

>rna5605-protein ID=rna5605-protein|Name=rna5605|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQ
LDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKM
KDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLS
LLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY

mRNA from alignment at CM002466.1:390448..391882+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5605 ID=rna5605|Name=rna5605|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at CM002466.1:390448..391882+ (Nannochloropsis gaditana)
GTAACCTGACCATTTCTGTCGACCCCACGTTTTGCCACGCTAATTGCAGG
TGCGACACAGATGTTTGCCTGATTGCTGGAGAGAAGATGGCTCGAAAtac
ttccgcctccgccgcctctgcgGTGGAGGCCCGACAGGCGTTCTTACAGC
TTCTTATGGTGAGGTGCTTTTGTCTTtgggccctttccccgcAAACCTGA
GTCCTCATCACTTATACCGATCTTGTAGAGCCGCAAGGTCATGACGCACA
GTCAAGCAGCAAATGCACTTGCCATGATTTCTGAGGAACTGAATGTGCAA
GACCAGCTTGGTGAGTGAAAGGCTCTGCGTTGGGGATCATCTTCGCAATT
ATATATTCACTGAAAGAGCGCCCTTCAAATTGATCTTCTCCCGGACCTTC
AGATGTTAAGTCCTGTCTGGCCAATCTCAATAAGGAACTGCAGAATTGTA
ATCTGCAGATCCGGGGAATGGTTCATCAAGACTCGGAGGCCTACGCCGTC
GTGAATGTGGTGGgtagaggagagagaggaggagggaggtacaTGCCCTT
CATTCTCTCATCTACTGCCCCTTACCCTGTCTTTATTCTTGGCAATTGTA
GCTGAGCGATGATGTGTCGAAAATGCACGCGTCAAAAATGAAGGACTGGT
AGGTGGAgcggggtgggaaagaaacaGAACCTCGCCCTCAGCTCCTGCAT
CCACCTTTCGAAACAGGGAGAAGGCCTATTTCAAGGAGGTAATCAAAGCC
ATTTGCGGGCGCGGTGGGAATTttgtcgaggacgatgaacTGACAGCTCT
CCGCGTACCGATTGGGGGTACGGCAGCCTCCGTGCGGGTATGTCATTCTG
TAACACACCGGGTTGGGAAGGCGTGTACTCTTTAacaggggaggatgcgg
gaaAACGCGACGCTCAATGGAGAGTCGTCCACTTAACCCTCGTACAGGAG
AAAAGATCGGTGCTCTCCCTTTTGAGTGCGGAGTTTTGGTTGCAGGTATG
TCCTTCGCCCGTCTGCCTCCCTGATTTACGTCGCTCAAACACCcgtcttc
tttttctgtcTACAGAGGGACAAGCACGGCCGTTTTGCCCTAGGCCCGCG
CACTTTTCTTGAGCTGGACGATTTCGTGCGAGCGCATGAGATGGAAATGC
CGCAGGTCCTTTACTATTAGGGTCGAAATGGCATGCCACGAGTCAAATTT
CCGGATTGGATGTTTACCAAACATCTCAACTGGGGGACTGTGATTCTACT
TTCAACAAGAATGCGGGGGCGGAAAATTAGATTCGCCCCTCAATTCTGCT
GCCACCGAAAGCAATCAATGAAAGGCATATGATGTGTTTATTCTTGGCCT
TGTTTTTTTTTGTGGGTGATGATGATCAGGGCTCCAGGCTTCTGAACAGC
GTAAAGAAAGGGCAACATCAAAGAACGCAAGACTC

Coding sequence (CDS) from alignment at CM002466.1:390448..391882+

>rna5605 ID=rna5605|Name=rna5605|organism=Nannochloropsis gaditana|type=CDS|length=4074bp|location=Sequence derived from alignment at CM002466.1:390448..391882+ (Nannochloropsis gaditana)
ATGGCTCGAAAtacttccgcctccgccgcctctgcgGTGGAGGCCCGACA
GGCGTTCTTACAGCTTCTTATGAGCCGCAAGGTCATGACGCACAGTCAAG
CAGCAAATGCACTTGCCATGATTTCTGAGGAACTGAATGTGCAAGACCAG
CTTGATGTTAAGTCCTGTCTGGCCAATCTCAATAAGGAACTGCAGAATTG
TAATCTGCAGATCCGGGGAATGGTTCATCAAGACTCGGAGGCCTACGCCG
TCGTGAATGTGCTGAGCGATGATGTGTCGAAAATGCACGCGTCAAAAATG
AAGGACTGGGAGAAGGCCTATTTCAAGGAGGTAATCAAAGCCATTTGCGG
GCGCGGTGGGAATTttgtcgaggacgatgaacTGACAGCTCTCCGCGTAC
CGATTGGGGGTACGGCAGCCTCCGTGCGGGAGAAAAGATCGGTGCTCTCC
CTTTTGAGTGCGGAGTTTTGGTTGCAGAGGGACAAGCACGGCCGTTTTGC
CCTAGGCCCGCGCACTTTTCTTGAGCTGGACGATTTCGTGCGAGCGCATG
AGATGGAAATGCCGCAGGTCCTTTACTATTAGATGGCTCGAAAtacttcc
gcctccgccgcctctgcgGTGGAGGCCCGACAGGCGTTCTTACAGCTTCT
TATGAGCCGCAAGGTCATGACGCACAGTCAAGCAGCAAATGCACTTGCCA
TGATTTCTGAGGAACTGAATGTGCAAGACCAGCTTGATGTTAAGTCCTGT
CTGGCCAATCTCAATAAGGAACTGCAGAATTGTAATCTGCAGATCCGGGG
AATGGTTCATCAAGACTCGGAGGCCTACGCCGTCGTGAATGTGCTGAGCG
ATGATGTGTCGAAAATGCACGCGTCAAAAATGAAGGACTGGGAGAAGGCC
TATTTCAAGGAGGTAATCAAAGCCATTTGCGGGCGCGGTGGGAATTttgt
cgaggacgatgaacTGACAGCTCTCCGCGTACCGATTGGGGGTACGGCAG
CCTCCGTGCGGGAGAAAAGATCGGTGCTCTCCCTTTTGAGTGCGGAGTTT
TGGTTGCAGAGGGACAAGCACGGCCGTTTTGCCCTAGGCCCGCGCACTTT
TCTTGAGCTGGACGATTTCGTGCGAGCGCATGAGATGGAAATGCCGCAGG
TCCTTTACTATTAGATGGCTCGAAAtacttccgcctccgccgcctctgcg
GTGGAGGCCCGACAGGCGTTCTTACAGCTTCTTATGAGCCGCAAGGTCAT
GACGCACAGTCAAGCAGCAAATGCACTTGCCATGATTTCTGAGGAACTGA
ATGTGCAAGACCAGCTTGATGTTAAGTCCTGTCTGGCCAATCTCAATAAG
GAACTGCAGAATTGTAATCTGCAGATCCGGGGAATGGTTCATCAAGACTC
GGAGGCCTACGCCGTCGTGAATGTGCTGAGCGATGATGTGTCGAAAATGC
ACGCGTCAAAAATGAAGGACTGGGAGAAGGCCTATTTCAAGGAGGTAATC
AAAGCCATTTGCGGGCGCGGTGGGAATTttgtcgaggacgatgaacTGAC
AGCTCTCCGCGTACCGATTGGGGGTACGGCAGCCTCCGTGCGGGAGAAAA
GATCGGTGCTCTCCCTTTTGAGTGCGGAGTTTTGGTTGCAGAGGGACAAG
CACGGCCGTTTTGCCCTAGGCCCGCGCACTTTTCTTGAGCTGGACGATTT
CGTGCGAGCGCATGAGATGGAAATGCCGCAGGTCCTTTACTATTAGATGG
CTCGAAAtacttccgcctccgccgcctctgcgGTGGAGGCCCGACAGGCG
TTCTTACAGCTTCTTATGAGCCGCAAGGTCATGACGCACAGTCAAGCAGC
AAATGCACTTGCCATGATTTCTGAGGAACTGAATGTGCAAGACCAGCTTG
ATGTTAAGTCCTGTCTGGCCAATCTCAATAAGGAACTGCAGAATTGTAAT
CTGCAGATCCGGGGAATGGTTCATCAAGACTCGGAGGCCTACGCCGTCGT
GAATGTGCTGAGCGATGATGTGTCGAAAATGCACGCGTCAAAAATGAAGG
ACTGGGAGAAGGCCTATTTCAAGGAGGTAATCAAAGCCATTTGCGGGCGC
GGTGGGAATTttgtcgaggacgatgaacTGACAGCTCTCCGCGTACCGAT
TGGGGGTACGGCAGCCTCCGTGCGGGAGAAAAGATCGGTGCTCTCCCTTT
TGAGTGCGGAGTTTTGGTTGCAGAGGGACAAGCACGGCCGTTTTGCCCTA
GGCCCGCGCACTTTTCTTGAGCTGGACGATTTCGTGCGAGCGCATGAGAT
GGAAATGCCGCAGGTCCTTTACTATTAGATGGCTCGAAAtacttccgcct
ccgccgcctctgcgGTGGAGGCCCGACAGGCGTTCTTACAGCTTCTTATG
AGCCGCAAGGTCATGACGCACAGTCAAGCAGCAAATGCACTTGCCATGAT
TTCTGAGGAACTGAATGTGCAAGACCAGCTTGATGTTAAGTCCTGTCTGG
CCAATCTCAATAAGGAACTGCAGAATTGTAATCTGCAGATCCGGGGAATG
GTTCATCAAGACTCGGAGGCCTACGCCGTCGTGAATGTGCTGAGCGATGA
TGTGTCGAAAATGCACGCGTCAAAAATGAAGGACTGGGAGAAGGCCTATT
TCAAGGAGGTAATCAAAGCCATTTGCGGGCGCGGTGGGAATTttgtcgag
gacgatgaacTGACAGCTCTCCGCGTACCGATTGGGGGTACGGCAGCCTC
CGTGCGGGAGAAAAGATCGGTGCTCTCCCTTTTGAGTGCGGAGTTTTGGT
TGCAGAGGGACAAGCACGGCCGTTTTGCCCTAGGCCCGCGCACTTTTCTT
GAGCTGGACGATTTCGTGCGAGCGCATGAGATGGAAATGCCGCAGGTCCT
TTACTATTAGATGGCTCGAAAtacttccgcctccgccgcctctgcgGTGG
AGGCCCGACAGGCGTTCTTACAGCTTCTTATGAGCCGCAAGGTCATGACG
CACAGTCAAGCAGCAAATGCACTTGCCATGATTTCTGAGGAACTGAATGT
GCAAGACCAGCTTGATGTTAAGTCCTGTCTGGCCAATCTCAATAAGGAAC
TGCAGAATTGTAATCTGCAGATCCGGGGAATGGTTCATCAAGACTCGGAG
GCCTACGCCGTCGTGAATGTGCTGAGCGATGATGTGTCGAAAATGCACGC
GTCAAAAATGAAGGACTGGGAGAAGGCCTATTTCAAGGAGGTAATCAAAG
CCATTTGCGGGCGCGGTGGGAATTttgtcgaggacgatgaacTGACAGCT
CTCCGCGTACCGATTGGGGGTACGGCAGCCTCCGTGCGGGAGAAAAGATC
GGTGCTCTCCCTTTTGAGTGCGGAGTTTTGGTTGCAGAGGGACAAGCACG
GCCGTTTTGCCCTAGGCCCGCGCACTTTTCTTGAGCTGGACGATTTCGTG
CGAGCGCATGAGATGGAAATGCCGCAGGTCCTTTACTATTAGATGGCTCG
AAAtacttccgcctccgccgcctctgcgGTGGAGGCCCGACAGGCGTTCT
TACAGCTTCTTATGAGCCGCAAGGTCATGACGCACAGTCAAGCAGCAAAT
GCACTTGCCATGATTTCTGAGGAACTGAATGTGCAAGACCAGCTTGATGT
TAAGTCCTGTCTGGCCAATCTCAATAAGGAACTGCAGAATTGTAATCTGC
AGATCCGGGGAATGGTTCATCAAGACTCGGAGGCCTACGCCGTCGTGAAT
GTGCTGAGCGATGATGTGTCGAAAATGCACGCGTCAAAAATGAAGGACTG
GGAGAAGGCCTATTTCAAGGAGGTAATCAAAGCCATTTGCGGGCGCGGTG
GGAATTttgtcgaggacgatgaacTGACAGCTCTCCGCGTACCGATTGGG
GGTACGGCAGCCTCCGTGCGGGAGAAAAGATCGGTGCTCTCCCTTTTGAG
TGCGGAGTTTTGGTTGCAGAGGGACAAGCACGGCCGTTTTGCCCTAGGCC
CGCGCACTTTTCTTGAGCTGGACGATTTCGTGCGAGCGCATGAGATGGAA
ATGCCGCAGGTCCTTTACTATTAG

Synonyms

Publications