EWM25068.1, cds5591 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|553179641|ref|XP_005852735.1| (dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >gi|422295798|gb|EKU23097.1| dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >gi|585106705|gb|EWM25068.1| Nse1 non-SMC component of SMC5-6 complex [Nannochloropsis gaditana]) HSP 1 Score: 401.364 bits (1030), Expect = 1.258e-141 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 Query: 1 MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193 MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY Sbjct: 1 MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|299473447|emb|CBN77844.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 78.1814 bits (191), Expect = 1.167e-14 Identity = 53/191 (27.75%), Postives = 100/191 (52.36%), Query Frame = 0 Query: 10 ASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEA---YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSL---LSAEFWLQRDKHGRFA-LGPRTFLELDDFVRAHEMEMPQVLYY 193 AS E QAF Q+LM+RKVM+ +A AL +S + + + ++ ++K L + ++ +R M + +N +D+++K+H SK++DW+ F+ +I+ +E +L L I A ++ + S L +FWL R + F LG RT++EL + ++ ++E+PQV+++ Sbjct: 2 ASLREPLQAFAQILMARKVMSQDEAQKALD-VSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|326470261|gb|EGD94270.1| (DNA repair protein Nse1 [Trichophyton tonsurans CBS 112818] >gi|326481099|gb|EGE05109.1| DNA repair protein Nse1 [Trichophyton equinum CBS 127.97] >gi|607890881|gb|EZF30743.1| hypothetical protein H101_05627 [Trichophyton interdigitale H6] >gi|633042652|gb|KDB20280.1| hypothetical protein H109_07761 [Trichophyton interdigitale MR816]) HSP 1 Score: 73.9442 bits (180), Expect = 2.137e-12 Identity = 62/196 (31.63%), Postives = 93/196 (47.45%), Query Frame = 0 Query: 17 QAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVH--QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI--------C-------------GRGGNFVEDDELTALRVPIGGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFV 180 +AFLQ MSR MT +A LA I E+ D Q D+ + +A +N + +L+IRG H Q S YA++N SD + ++ + D E AY K ++ A+ C R G+ + + VP GTA S+RE +LS L AE WL+R + G ++L PR +EL ++ Sbjct: 11 RAFLQAFMSRSTMTLEEAKPVLAAIFTVSEGREILPGDITQTDLNTYIAAINTAISAFDLEIRGTAHQTQQSRVYALINTTSDPMMQLATTYSAD-EIAYVKRLLDAMFESNNTSRCEAMVVSSIEAVRLARTGSNLNRRQSEG--VPQSGTAQPLSMREAEGMLSRLVAEGWLERSQAGYYSLSPRALMELRGWL 203
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|607942539|gb|EZF75594.1| (hypothetical protein H105_02789 [Trichophyton soudanense CBS 452.61] >gi|607979085|gb|EZG08126.1| hypothetical protein H106_02612 [Trichophyton rubrum CBS 735.88]) HSP 1 Score: 71.2478 bits (173), Expect = 1.157e-11 Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = 0 Query: 15 ARQAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVH--QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI-----CGRGGNFVEDDELTALR---------------VPIGGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176 + +AFLQ MSR MT +A LA I E++ D Q D+ + +A +N + +L+IR H Q S YA++N SD + ++ + D E AY K ++ A+ R V + A+R VP GTA S+RE +LS L AE WL+ + G ++L PR +EL Sbjct: 9 SHRAFLQAFMSRSTMTLEEAKPVLAAIFTVSEGREISPGDITQTDLNTYIAAINTAISAFDLEIRSTAHQTQQSRVYALINTTSDPMMQLATTYSAD-EIAYVKRLLDAMFESNNTSRCEAMVVSS-IEAVRLARTGANLNRRQSEGVPQSGTAQPLSMREAEGMLSRLVAEGWLEMSRAGYYSLSPRALMEL 199
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1002969044|ref|XP_002796547.2| (hypothetical protein PAAG_01555 [Paracoccidioides lutzii Pb01] >gi|701694842|gb|EEH39093.2| hypothetical protein PAAG_01555 [Paracoccidioides lutzii Pb01]) HSP 1 Score: 66.2402 bits (160), Expect = 1.554e-9 Identity = 55/197 (27.92%), Postives = 89/197 (45.18%), Query Frame = 0 Query: 14 EARQAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVHQDSEA--YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI---------------------CGRGGNFVEDDELTALR--VPIGGTAASV--REKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176 ++ +AFLQ M+R MT QA LA I +E++ +D Q D+ + +A +N + +L+IR HQ Y +VN SD ++++ A+ E A+ K V+ A+ + + E TA+ +PI G A S+ RE ++ L E W + + G F L PR +EL Sbjct: 10 DSHRAFLQAFMARSTMTFEQAKPVLAAIFSARDNEDILPEDITQTDLTNNIAIINTAISPFDLEIRSTKHQTDHTIIYGLVNTTSDPLTQL-ATTHNANEIAFVKRVLDAMFDTYNTSRLEAMAVSSMQVAQLAKAPTTADRHESTAMNGGIPIAGAAQSLGLREAEDMMKKLVEEGWFEESRRGYFTLSPRGLMEL 205
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|915047014|ref|XP_013269911.1| (hypothetical protein Z518_08717 [Rhinocladiella mackenziei CBS 650.93] >gi|759326445|gb|KIX02775.1| hypothetical protein Z518_08717 [Rhinocladiella mackenziei CBS 650.93]) HSP 1 Score: 65.855 bits (159), Expect = 1.788e-9 Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = 0 Query: 13 VEARQAFLQLLMSRKVMTHSQAANALAMIS-----EELNVQDQL--DVKSCLANLNKELQNCNLQIRGMVHQDSE--AYAVVNVLSDDVSKMHASKMKDWEKAYFKEVI-------------KAIC---------GRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176 +A +AFLQ +SR V+T A +A IS E+ +QD D+ S ++ N++L +L+IR HQ + YA+VN SD ++++ + D E Y K+++ +A+C GR N E + G A R+ S+L+ L E WL++ + G ++L PR +EL Sbjct: 11 TDANRAFLQAFLSRNVLTLETAKPIIAAISSFQDGREVQLQDVTVEDLNSYISEANRKLSPLDLEIRSTFHQQTRERVYALVNTTSDPLTQLATTYTAD-EIVYVKKLLDAMFNGQNNKGKREAMCLSAIDAIQVGRAQNRRETQNGNTTQSSTGMLGA--RDAESMLNRLVDEGWLEKSRLGFYSLSPRALMEL 202
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1174592956|gb|OQU95244.1| (hypothetical protein CLAIMM_01478 [Cladophialophora immunda]) HSP 1 Score: 65.4698 bits (158), Expect = 5.039e-9 Identity = 56/203 (27.59%), Postives = 97/203 (47.78%), Query Frame = 0 Query: 5 TSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMIS-----EELNVQDQL--DVKSCLANLNKELQNCNLQIRGMVHQDSE--AYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI-------------CGRGGNFVEDDELTALR-VPIG---GTAASV-----REKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176 +S ++A +A +AF+Q ++R V+T A +A S E+ QD D+ +A+ N+ L +L+IR HQ + YA+VN SD ++++ + D E Y K+++ AI C G + ++ R +P G GT AS ++ ++L L E WL++ + G ++L PR +EL Sbjct: 3 SSGASAGYNDANKAFIQAFLARSVLTLETAKPIIAACSTFKEHREVLPQDVTVEDLNDYVADANRRLSPLDLEIRSTFHQQTRERVYALVNTTSDSLTQLATTYTAD-EIVYVKKLLDAIFDGQNNKGKREAMCISGIDAIQVGRAPLRRQIPDGNENGTQASAGMLGAKDAENMLHRLLDEGWLEKSRAGFYSLSPRALMEL 204
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|676383325|ref|XP_009034941.1| (hypothetical protein AURANDRAFT_62663 [Aureococcus anophagefferens] >gi|323454238|gb|EGB10108.1| hypothetical protein AURANDRAFT_62663 [Aureococcus anophagefferens]) HSP 1 Score: 62.7734 bits (151), Expect = 5.686e-9 Identity = 47/182 (25.82%), Postives = 85/182 (46.70%), Query Frame = 0 Query: 29 MTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVH-----------QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIG------GTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193 MT +A + I+ ++ ++ LA++NKEL+ +L++RG D + A++N++SDDV+K+ ++ E F +++ I ED E VPI G + + SL+ A + + + GPR++LEL D +R H +E+PQ++ Y Sbjct: 1 MTEDEAGKVIDEIATDVLPGRGQSLRMALADINKELKKMDLEVRGYYTGKKVKDDQGDAHDEKVLALINLVSDDVAKVEGGRLTPDEVKLFTKMLARIAAG-----EDHE-----VPIDVLRDDKGKLTNPQFAEFAKSLVDARWLAKAPDDDVVSYGPRSYLELADIIREHGVEVPQMITY 172
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|303320821|ref|XP_003070405.1| (Nse1 non-SMC component of SMC5-6 complex family protein [Coccidioides posadasii C735 delta SOWgp] >gi|240110101|gb|EER28260.1| Nse1 non-SMC component of SMC5-6 complex family protein [Coccidioides posadasii C735 delta SOWgp]) HSP 1 Score: 63.929 bits (154), Expect = 5.744e-9 Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = 0 Query: 15 ARQAFLQLLMSRKVMTHSQAANALAMISEELNVQD----------QLDVKSCLANLNKELQNCNLQIRGMVHQD--SEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPI-------------------GGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176 + +AFLQ LM+R MT ++A LA I L+V+D Q D+ + ++++N + + +IR VHQ + YA+VN SD + ++ + D E AY K ++ A+ E+ + + + GG A S+RE +L L E W ++ + G ++L PR +EL Sbjct: 12 SHRAFLQALMARSTMTLNEAKPILAAI---LSVKDGREVLPGDVTQADLSNYISSINTAISPFDFEIRNSVHQTNHTRVYALVNTTSDPLMQLATTYTAD-EIAYVKRLLDAMFETNNTLREEAMVVSAIKAVQLAKVSNNNSRRESQSATQGGNAQPLSMREAEDMLQRLVDEGWFEKSRKGNYSLTPRALMEL 202
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1150685029|ref|XP_020253650.1| (uncharacterized protein LOC109830704 [Asparagus officinalis] >gi|1141996771|gb|ONK77989.1| uncharacterized protein A4U43_C02F13050 [Asparagus officinalis]) HSP 1 Score: 64.3142 bits (155), Expect = 6.732e-9 Identity = 54/192 (28.12%), Postives = 87/192 (45.31%), Query Frame = 0 Query: 18 AFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQ-DSEAY-AVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICG----------------------RGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEM 185 A +Q L+SR + S+ I+ V+ Q L +NKEL ++RG +Q D + Y VVN L+D+ SK+ +K + A++K +I+AI +GG +D + + RVP + S+ +K L+ L + WL GR LG R+FL+L + R E+ Sbjct: 10 ALIQALLSRGPLKESEFHKVFYEITGRNPVEHQQAFNDSLRKINKELGYVKFELRGCRNQYDGKVYYGVVNTLADEQSKL-GTKYSVPQIAFYKAIIEAIVQDITTQGHITNIGALNLRLEYQVQGG---QDSQGSQSRVPAAFKSFSISQKEKTLNDLIQDQWLCYTSDGRIGLGVRSFLDLRSWFRTSEI 197 The following BLAST results are available for this feature:
BLAST of EWM25068.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|