EWM25068.1, cds5591 (CDS) Nannochloropsis gaditana

Overview
NameEWM25068.1
Unique Namecds5591
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:390534..390605 +
Alignment locationCM002466.1:390676..390757 +
Alignment locationCM002466.1:390850..390956 +
Alignment locationCM002466.1:391049..391095 +
Alignment locationCM002466.1:391164..391284 +
Alignment locationCM002466.1:391395..391442 +
Alignment locationCM002466.1:391513..391617 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25068.1
ProductNse1 non-SMC component of SMC5-6 complex
Orig transcript idgnl|cribi|Naga_100098g2.5262.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:390534..390605 +
CM002466.1supercontigCM002466.1:390676..390757 +
CM002466.1supercontigCM002466.1:390850..390956 +
CM002466.1supercontigCM002466.1:391049..391095 +
CM002466.1supercontigCM002466.1:391164..391284 +
CM002466.1supercontigCM002466.1:391395..391442 +
CM002466.1supercontigCM002466.1:391513..391617 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0030915Smc5-Smc6 complex
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1
Homology
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|553179641|ref|XP_005852735.1| (dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >gi|422295798|gb|EKU23097.1| dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >gi|585106705|gb|EWM25068.1| Nse1 non-SMC component of SMC5-6 complex [Nannochloropsis gaditana])

HSP 1 Score: 401.364 bits (1030), Expect = 1.258e-141
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
            MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY
Sbjct:    1 MARNTSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|299473447|emb|CBN77844.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.1814 bits (191), Expect = 1.167e-14
Identity = 53/191 (27.75%), Postives = 100/191 (52.36%), Query Frame = 0
Query:   10 ASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEA---YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSL---LSAEFWLQRDKHGRFA-LGPRTFLELDDFVRAHEMEMPQVLYY 193
            AS  E  QAF Q+LM+RKVM+  +A  AL  +S +   +    +   ++ ++K L + ++ +R M          +  +N  +D+++K+H SK++DW+   F+ +I+         +E  +L  L   I    A   ++  + S    L  +FWL R  +  F  LG RT++EL + ++  ++E+PQV+++
Sbjct:    2 ASLREPLQAFAQILMARKVMSQDEAQKALD-VSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|326470261|gb|EGD94270.1| (DNA repair protein Nse1 [Trichophyton tonsurans CBS 112818] >gi|326481099|gb|EGE05109.1| DNA repair protein Nse1 [Trichophyton equinum CBS 127.97] >gi|607890881|gb|EZF30743.1| hypothetical protein H101_05627 [Trichophyton interdigitale H6] >gi|633042652|gb|KDB20280.1| hypothetical protein H109_07761 [Trichophyton interdigitale MR816])

HSP 1 Score: 73.9442 bits (180), Expect = 2.137e-12
Identity = 62/196 (31.63%), Postives = 93/196 (47.45%), Query Frame = 0
Query:   17 QAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVH--QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI--------C-------------GRGGNFVEDDELTALRVPIGGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFV 180
            +AFLQ  MSR  MT  +A   LA I       E+   D  Q D+ + +A +N  +   +L+IRG  H  Q S  YA++N  SD + ++  +   D E AY K ++ A+        C              R G+ +   +     VP  GTA   S+RE   +LS L AE WL+R + G ++L PR  +EL  ++
Sbjct:   11 RAFLQAFMSRSTMTLEEAKPVLAAIFTVSEGREILPGDITQTDLNTYIAAINTAISAFDLEIRGTAHQTQQSRVYALINTTSDPMMQLATTYSAD-EIAYVKRLLDAMFESNNTSRCEAMVVSSIEAVRLARTGSNLNRRQSEG--VPQSGTAQPLSMREAEGMLSRLVAEGWLERSQAGYYSLSPRALMELRGWL 203          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|607942539|gb|EZF75594.1| (hypothetical protein H105_02789 [Trichophyton soudanense CBS 452.61] >gi|607979085|gb|EZG08126.1| hypothetical protein H106_02612 [Trichophyton rubrum CBS 735.88])

HSP 1 Score: 71.2478 bits (173), Expect = 1.157e-11
Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = 0
Query:   15 ARQAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVH--QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI-----CGRGGNFVEDDELTALR---------------VPIGGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176
            + +AFLQ  MSR  MT  +A   LA I       E++  D  Q D+ + +A +N  +   +L+IR   H  Q S  YA++N  SD + ++  +   D E AY K ++ A+       R    V    + A+R               VP  GTA   S+RE   +LS L AE WL+  + G ++L PR  +EL
Sbjct:    9 SHRAFLQAFMSRSTMTLEEAKPVLAAIFTVSEGREISPGDITQTDLNTYIAAINTAISAFDLEIRSTAHQTQQSRVYALINTTSDPMMQLATTYSAD-EIAYVKRLLDAMFESNNTSRCEAMVVSS-IEAVRLARTGANLNRRQSEGVPQSGTAQPLSMREAEGMLSRLVAEGWLEMSRAGYYSLSPRALMEL 199          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1002969044|ref|XP_002796547.2| (hypothetical protein PAAG_01555 [Paracoccidioides lutzii Pb01] >gi|701694842|gb|EEH39093.2| hypothetical protein PAAG_01555 [Paracoccidioides lutzii Pb01])

HSP 1 Score: 66.2402 bits (160), Expect = 1.554e-9
Identity = 55/197 (27.92%), Postives = 89/197 (45.18%), Query Frame = 0
Query:   14 EARQAFLQLLMSRKVMTHSQAANALAMI-----SEELNVQD--QLDVKSCLANLNKELQNCNLQIRGMVHQDSEA--YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI---------------------CGRGGNFVEDDELTALR--VPIGGTAASV--REKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176
            ++ +AFLQ  M+R  MT  QA   LA I     +E++  +D  Q D+ + +A +N  +   +L+IR   HQ      Y +VN  SD ++++ A+     E A+ K V+ A+                       +     +  E TA+   +PI G A S+  RE   ++  L  E W +  + G F L PR  +EL
Sbjct:   10 DSHRAFLQAFMARSTMTFEQAKPVLAAIFSARDNEDILPEDITQTDLTNNIAIINTAISPFDLEIRSTKHQTDHTIIYGLVNTTSDPLTQL-ATTHNANEIAFVKRVLDAMFDTYNTSRLEAMAVSSMQVAQLAKAPTTADRHESTAMNGGIPIAGAAQSLGLREAEDMMKKLVEEGWFEESRRGYFTLSPRGLMEL 205          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|915047014|ref|XP_013269911.1| (hypothetical protein Z518_08717 [Rhinocladiella mackenziei CBS 650.93] >gi|759326445|gb|KIX02775.1| hypothetical protein Z518_08717 [Rhinocladiella mackenziei CBS 650.93])

HSP 1 Score: 65.855 bits (159), Expect = 1.788e-9
Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = 0
Query:   13 VEARQAFLQLLMSRKVMTHSQAANALAMIS-----EELNVQDQL--DVKSCLANLNKELQNCNLQIRGMVHQDSE--AYAVVNVLSDDVSKMHASKMKDWEKAYFKEVI-------------KAIC---------GRGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176
             +A +AFLQ  +SR V+T   A   +A IS      E+ +QD    D+ S ++  N++L   +L+IR   HQ +    YA+VN  SD ++++  +   D E  Y K+++             +A+C         GR  N  E       +   G   A  R+  S+L+ L  E WL++ + G ++L PR  +EL
Sbjct:   11 TDANRAFLQAFLSRNVLTLETAKPIIAAISSFQDGREVQLQDVTVEDLNSYISEANRKLSPLDLEIRSTFHQQTRERVYALVNTTSDPLTQLATTYTAD-EIVYVKKLLDAMFNGQNNKGKREAMCLSAIDAIQVGRAQNRRETQNGNTTQSSTGMLGA--RDAESMLNRLVDEGWLEKSRLGFYSLSPRALMEL 202          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1174592956|gb|OQU95244.1| (hypothetical protein CLAIMM_01478 [Cladophialophora immunda])

HSP 1 Score: 65.4698 bits (158), Expect = 5.039e-9
Identity = 56/203 (27.59%), Postives = 97/203 (47.78%), Query Frame = 0
Query:    5 TSASAASAVEARQAFLQLLMSRKVMTHSQAANALAMIS-----EELNVQDQL--DVKSCLANLNKELQNCNLQIRGMVHQDSE--AYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAI-------------CGRGGNFVEDDELTALR-VPIG---GTAASV-----REKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176
            +S ++A   +A +AF+Q  ++R V+T   A   +A  S      E+  QD    D+   +A+ N+ L   +L+IR   HQ +    YA+VN  SD ++++  +   D E  Y K+++ AI             C  G + ++       R +P G   GT AS      ++  ++L  L  E WL++ + G ++L PR  +EL
Sbjct:    3 SSGASAGYNDANKAFIQAFLARSVLTLETAKPIIAACSTFKEHREVLPQDVTVEDLNDYVADANRRLSPLDLEIRSTFHQQTRERVYALVNTTSDSLTQLATTYTAD-EIVYVKKLLDAIFDGQNNKGKREAMCISGIDAIQVGRAPLRRQIPDGNENGTQASAGMLGAKDAENMLHRLLDEGWLEKSRAGFYSLSPRALMEL 204          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|676383325|ref|XP_009034941.1| (hypothetical protein AURANDRAFT_62663 [Aureococcus anophagefferens] >gi|323454238|gb|EGB10108.1| hypothetical protein AURANDRAFT_62663 [Aureococcus anophagefferens])

HSP 1 Score: 62.7734 bits (151), Expect = 5.686e-9
Identity = 47/182 (25.82%), Postives = 85/182 (46.70%), Query Frame = 0
Query:   29 MTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVH-----------QDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIG------GTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
            MT  +A   +  I+ ++       ++  LA++NKEL+  +L++RG               D +  A++N++SDDV+K+   ++   E   F +++  I        ED E     VPI       G   + +      SL+ A +  +       + GPR++LEL D +R H +E+PQ++ Y
Sbjct:    1 MTEDEAGKVIDEIATDVLPGRGQSLRMALADINKELKKMDLEVRGYYTGKKVKDDQGDAHDEKVLALINLVSDDVAKVEGGRLTPDEVKLFTKMLARIAAG-----EDHE-----VPIDVLRDDKGKLTNPQFAEFAKSLVDARWLAKAPDDDVVSYGPRSYLELADIIREHGVEVPQMITY 172          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|303320821|ref|XP_003070405.1| (Nse1 non-SMC component of SMC5-6 complex family protein [Coccidioides posadasii C735 delta SOWgp] >gi|240110101|gb|EER28260.1| Nse1 non-SMC component of SMC5-6 complex family protein [Coccidioides posadasii C735 delta SOWgp])

HSP 1 Score: 63.929 bits (154), Expect = 5.744e-9
Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = 0
Query:   15 ARQAFLQLLMSRKVMTHSQAANALAMISEELNVQD----------QLDVKSCLANLNKELQNCNLQIRGMVHQD--SEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPI-------------------GGTAA--SVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLEL 176
            + +AFLQ LM+R  MT ++A   LA I   L+V+D          Q D+ + ++++N  +   + +IR  VHQ   +  YA+VN  SD + ++  +   D E AY K ++ A+        E+  + +    +                   GG A   S+RE   +L  L  E W ++ + G ++L PR  +EL
Sbjct:   12 SHRAFLQALMARSTMTLNEAKPILAAI---LSVKDGREVLPGDVTQADLSNYISSINTAISPFDFEIRNSVHQTNHTRVYALVNTTSDPLMQLATTYTAD-EIAYVKRLLDAMFETNNTLREEAMVVSAIKAVQLAKVSNNNSRRESQSATQGGNAQPLSMREAEDMLQRLVDEGWFEKSRKGNYSLTPRALMEL 202          
BLAST of EWM25068.1 vs. NCBI_GenBank
Match: gi|1150685029|ref|XP_020253650.1| (uncharacterized protein LOC109830704 [Asparagus officinalis] >gi|1141996771|gb|ONK77989.1| uncharacterized protein A4U43_C02F13050 [Asparagus officinalis])

HSP 1 Score: 64.3142 bits (155), Expect = 6.732e-9
Identity = 54/192 (28.12%), Postives = 87/192 (45.31%), Query Frame = 0
Query:   18 AFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQ-DSEAY-AVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICG----------------------RGGNFVEDDELTALRVPIGGTAASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEM 185
            A +Q L+SR  +  S+       I+    V+ Q      L  +NKEL     ++RG  +Q D + Y  VVN L+D+ SK+  +K    + A++K +I+AI                        +GG   +D + +  RVP    + S+ +K   L+ L  + WL     GR  LG R+FL+L  + R  E+
Sbjct:   10 ALIQALLSRGPLKESEFHKVFYEITGRNPVEHQQAFNDSLRKINKELGYVKFELRGCRNQYDGKVYYGVVNTLADEQSKL-GTKYSVPQIAFYKAIIEAIVQDITTQGHITNIGALNLRLEYQVQGG---QDSQGSQSRVPAAFKSFSISQKEKTLNDLIQDQWLCYTSDGRIGLGVRSFLDLRSWFRTSEI 197          
The following BLAST results are available for this feature:
BLAST of EWM25068.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179641|ref|XP_005852735.1|1.258e-141100.00dna repair protein nse1 [Nannochloropsis gaditana ... [more]
gi|299473447|emb|CBN77844.1|1.167e-1427.75expressed unknown protein [Ectocarpus siliculosus][more]
gi|326470261|gb|EGD94270.1|2.137e-1231.63DNA repair protein Nse1 [Trichophyton tonsurans CB... [more]
gi|607942539|gb|EZF75594.1|1.157e-1131.61hypothetical protein H105_02789 [Trichophyton soud... [more]
gi|1002969044|ref|XP_002796547.2|1.554e-927.92hypothetical protein PAAG_01555 [Paracoccidioides ... [more]
gi|915047014|ref|XP_013269911.1|1.788e-928.72hypothetical protein Z518_08717 [Rhinocladiella ma... [more]
gi|1174592956|gb|OQU95244.1|5.039e-927.59hypothetical protein CLAIMM_01478 [Cladophialophor... [more]
gi|676383325|ref|XP_009034941.1|5.686e-925.82hypothetical protein AURANDRAFT_62663 [Aureococcus... [more]
gi|303320821|ref|XP_003070405.1|5.744e-927.18Nse1 non-SMC component of SMC5-6 complex family pr... [more]
gi|1150685029|ref|XP_020253650.1|6.732e-928.13uncharacterized protein LOC109830704 [Asparagus of... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5605rna5605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications