rna5604, rna5604 (mRNA) Nannochloropsis gaditana

Overview
Namerna5604
Unique Namerna5604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1388
Alignment locationCM002466.1:389286..390105 -

Link to JBrowse

Properties
Property NameValue
Productadp-ribosylation factor gtpase-activating
Orig transcript idgnl|cribi|Naga_100098g1.5266.mrna
Orig protein idgnl|cribi|Naga_100098g1.5266
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:389286..390105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g1gene5416Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5604rna5604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25072.1cds5590Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5604 ID=rna5604|Name=rna5604|organism=Nannochloropsis gaditana|type=mRNA|length=1388bp
CCCCCCTCTTCCTCCCCCTCCAAGAGCAAGCCGGCAGCGCCTGCCAAGGG
CGGGCGGGTCTTCGCGCTTCAAGGAGACGGCCGATGGCGGTCGGCGACGG
TGATCCGTTTCCACAGGGCCCGGAGCCCCCTGACGGGCCGGCACCTGCTC
AAGCTCCGGTACCGAGACGGCAGTGTCGAGGAGTATGTGGACGCGGAGGA
CGTGTGCCTGGCCCGGCCCCAGAGGGGATCGGCCAACTCGCCCTCTCTCG
CCTCCTCCCCGACCTCCTCTTCTTCCTCCTCCTCTCCCTTGCCCACCCAA
GCGTCGCTGTGGAAAGCCTCCCTTGAGCGCGTCTCGGCCCCGACGCAACG
GCGCGACCGGCGGGAAGAACTCAGCCGCAAGTACGCCGCGGGCGCCAGCC
CCTCCCACTCACCCGCCGAGGGCGGCTTTTCCCCGCCCTGGCCTCCCACC
GGCCCGCCGAGCTCTTCCCGGCAGCGCCCATCTTCCATTCCGGCCCCGGA
GCATTCCGGACAGGCGCGGGAGTATTCGGTGGTTTTCGGGGAGGGGCCCA
TGGGGCTGACTCTGAGCAAGGTCGAGGGGGGCCGGGCCCTGGTCACGAGT
GTGGCGCCCGCAGGCCAAGCTGTGCTGGGCGGGGTGCGCGTGGGGGATGC
TCTGGTTAGCCTCGACCATCAAGCCATGGCGCTCTACGACCTGGTCATGG
CCCGGCTGCCCTCCCTCCCGCGGCCCCTGGTGGTTGGCTTCCGACGGAGG
ATGGAGGGGATGGGGAGCACCGAGGGCGCGGTGGGAGGCCCTAGGGCACC
GGGTCCGCGCTGGCTGGGGAGCGGGGCGTCCTTGTCGGGCTCGGGAGGTA
AAGCCTTCGCGGGCGGCTTCGGGAAGTCCCTCCAGGTGCTCACGCGCCAT
GCCAGCCTTGGCCCGGGGGCAGCCGCCGTCCCCTCCCTGGCCTCGGCCTC
CTCCTCCTCCTTCACGAGCGGCGGCAGCTATCCCTTGGGAGGCGGTTCTG
GTCTCACAACCAAAGTCCCGTTGACCGAAGACCCGGATGCCGGGGAATTC
GACGCCTGTTTTGCGGAGGGGCCGCTTGGCATGCGGTTGGAGGAGATGCC
GTTGACGTCGAGGGAAGGTGGCCTCAAGTACGTGTGCCAGGTTTTGCAAG
TGACCAGTGGGGGGGCAGCTGAGTCGAAGGGTGTTCGTGACGGTTGCTGT
GTCGTCGGCGTCAACGGGGAACGCTTCATATCTCATGCACACACGGTGGC
CACTTTGAAGCACGGGAAGCGCCCCGTGCTTGTCCGATTTCGGCTGCCGA
CATCATAAGAGTAGCTTAGCTTCATACTCAAATTTGGGAAATGTTGGGGG
AAAAAAAGTTTGTACGAAAGTATAATGCGCGAATGTGC
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protein sequence of rna5604

>rna5604-protein ID=rna5604-protein|Name=rna5604|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILIC
LRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRI
SNTDIRVRYQSKAAGVYRSTLAEAVEKGWDGG
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mRNA from alignment at CM002466.1:389286..390105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5604 ID=rna5604|Name=rna5604|organism=Nannochloropsis gaditana|type=mRNA|length=820bp|location=Sequence derived from alignment at CM002466.1:389286..390105- (Nannochloropsis gaditana)
ATGAGTGCGCTTGCCGCGTTGCGGGCCGAGGGGCCATTTCCGCCCGACAT
CTTGCTGGAAATTAAAAATAGCCCGGGGAACAAGTAAGTCTGCCTCCATT
TTTTTTGAACGCACTCCCTCAAAGGCCCTACGACAGTGTCTTGCCTTCTT
TTGTTCTTCGGCAACCTAAATGTTCCTGCCTTCTGGCGGACAAGCTTGCA
TGGCATTCGTTTCTTCTTGCCTCCCCCTATGCTCCTAATGCGAGTCACGA
TGTGTGTAGACTACAGCATACTTCGGGAAAACATGTTAACGCTGTCCAAC
AGTTGCATACGTCAAAGCTTTTTTTCAATTAGTGTGAGGAGCGCCCTCAT
AGAATATCTGTGGATGTATGTCTTTCCCTACCTTCCAGCCAGTGCTGTGA
TTGCGGCTCCTTTGACACGGAATGGGCGAGCGTCACGTACGGCATCCTCA
TCTGCTTGCGCTGCTCCGGATTCCACCGTTCCCTGGGCGTGAGCGTAAGC
TTTGTCCGCTCCCTGTCTCTGGACTCCTGGACCCCAAAGCAAGTCTTCGC
CATGCGCCTGGGCTCGAACTTCCAGATGCAAGAGTTTTTTCGTCGGCAAC
GGATCTCCAACACGGACATCCGCGTCCGGTACCAGTCCAAAGCGGCGGGG
GTGTATCGAAGCACCCTGGCCGAGGCTGTGGAGAAGGGCTGGGAGTCCGA
CTGGGAGCAACGCCGGGGTCGGAACGGCAAGCGCCCGGCTCGCCGCACCC
GGCTGGCGTCGGCGACGCTGGCCTCCCCCCCTCGCCGGCACTCCGCCTCT
GCCCTGGGAGCGGGGGCTAA
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Coding sequence (CDS) from alignment at CM002466.1:389286..390105-

>rna5604 ID=rna5604|Name=rna5604|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002466.1:389286..390105- (Nannochloropsis gaditana)
CGGGGGCTAACCAGTGCTGTGATTGCGGCTCCTTTGACACGGAATGGGCG
AGCGTCACGTACGGCATCCTCATCTGCTTGCGCTGCTCCGGATTCCACCG
TTCCCTGGGCGTGAGCGTAAGCTTTGTCCGCTCCCTGTCTCTGGACTCCT
GGACCCCAAAGCAAGTCTTCGCCATGCGCCTGGGCTCGAACTTCCAGATG
CAAGAGTTTTTTCGTCGGCAACGGATCTCCAACACGGACATCCGCGTCCG
GTACCAGTCCAAAGCGGCGGGGGTGTATCGAAGCACCCTGGCCGAGGCTG
TGGAGAAGGGCTGGGAATGAGTGCGCTTGCCGCGTTGCGGGCCGAGGGGC
CATTTCCGCCCGACATCTTGCTGGAAATTAAAAATAGCCCGGGGAACAAC
GGGGGCTAACCAGTGCTGTGATTGCGGCTCCTTTGACACGGAATGGGCGA
GCGTCACGTACGGCATCCTCATCTGCTTGCGCTGCTCCGGATTCCACCGT
TCCCTGGGCGTGAGCGTAAGCTTTGTCCGCTCCCTGTCTCTGGACTCCTG
GACCCCAAAGCAAGTCTTCGCCATGCGCCTGGGCTCGAACTTCCAGATGC
AAGAGTTTTTTCGTCGGCAACGGATCTCCAACACGGACATCCGCGTCCGG
TACCAGTCCAAAGCGGCGGGGGTGTATCGAAGCACCCTGGCCGAGGCTGT
GGAGAAGGGCTGGGAATGAGTGCGCTTGCCGCGTTGCGGGCCGAGGGGCC
ATTTCCGCCCGACATCTTGCTGGAAATTAAAAATAGCCCGGGGAACAACG
GGGGCTAACCAGTGCTGTGATTGCGGCTCCTTTGACACGGAATGGGCGAG
CGTCACGTACGGCATCCTCATCTGCTTGCGCTGCTCCGGATTCCACCGTT
CCCTGGGCGTGAGCGTAAGCTTTGTCCGCTCCCTGTCTCTGGACTCCTGG
ACCCCAAAGCAAGTCTTCGCCATGCGCCTGGGCTCGAACTTCCAGATGCA
AGAGTTTTTTCGTCGGCAACGGATCTCCAACACGGACATCCGCGTCCGGT
ACCAGTCCAAAGCGGCGGGGGTGTATCGAAGCACCCTGGCCGAGGCTGTG
GAGAAGGGCTGGGAATGAGTGCGCTTGCCGCGTTGCGGGCCGAGGGGCCA
TTTCCGCCCGACATCTTGCTGGAAATTAAAAATAGCCCGGGGAACAA
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Synonyms
Publications