EWM25072.1, cds5590 (CDS) Nannochloropsis gaditana

Overview
NameEWM25072.1
Unique Namecds5590
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:390023..390105 -
Alignment locationCM002466.1:389412..389717 -
Alignment locationCM002466.1:389286..389295 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25072.1
Productadp-ribosylation factor gtpase-activating
Orig transcript idgnl|cribi|Naga_100098g1.5266.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:390023..390105 -
CM002466.1supercontigCM002466.1:389412..389717 -
CM002466.1supercontigCM002466.1:389286..389295 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP
Homology
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|585106709|gb|EWM25072.1| (adp-ribosylation factor gtpase-activating [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 6.407e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGWDGG 132
            MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGWDGG
Sbjct:    1 MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGWDGG 132          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|553179637|ref|XP_005852734.1| (hypothetical protein NGA_0631820 [Nannochloropsis gaditana CCMP526] >gi|422295797|gb|EKU23096.1| hypothetical protein NGA_0631820 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.855 bits (686), Expect = 1.084e-90
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGWD 130
            MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGW+
Sbjct:    1 MSALAALRAEGPFPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKGWE 130          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|1032151273|gb|OAO14898.1| (ADP-ribosylation factor GTPase-activating protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 128.257 bits (321), Expect = 4.261e-33
Identity = 52/115 (45.22%), Postives = 81/115 (70.43%), Query Frame = 0
Query:   13 FPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRIS-NTDIRVRYQSKAAGVYRSTLAEAVE 126
             PP+++ E+++ PGN++C DCG+ + EWASVTYG LIC++C+G HR LGV +S+VRSL +DSW   ++  M+ G N ++ +FF+R  I  +  I ++Y +K A +YR+ L   VE
Sbjct:    4 MPPEVVAEVRSLPGNDRCADCGAENPEWASVTYGSLICVKCAGLHRGLGVHISYVRSLEMDSWEESEIKMMKAGGNQRLLDFFKRHNIERDAPISLKYNTKTAELYRTILKAIVE 118          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|950886540|ref|XP_014526150.1| (hypothetical protein JH06_3736 [Blastocystis sp. subtype 4] >gi|902860761|gb|KNB42707.1| hypothetical protein JH06_3736 [Blastocystis sp. subtype 4])

HSP 1 Score: 122.479 bits (306), Expect = 1.156e-32
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 0
Query:   16 DILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRI-SNTDIRVRYQSKAAGVYRSTLAEAVE 126
            +I+ EIK  PGN++C DCG     WAS++YG LICL+CSG HR LGV +SFVRSL LD+W+  ++ AM++G N QM +FF +  I S   + V+Y ++ A +YRS +   V+
Sbjct:    7 EIMEEIKALPGNDRCADCGEEKPVWASISYGSLICLKCSGLHRGLGVHLSFVRSLELDTWSENEIKAMKMGGNKQMIDFFEKHNIPSEVPVSVKYTTETATLYRSIIKAKVD 118          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|855300971|ref|XP_012893941.1| (uncharacterized protein [Blastocystis hominis] >gi|300120339|emb|CBK19893.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 129.028 bits (323), Expect = 1.163e-32
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 0
Query:   14 PPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRI-SNTDIRVRYQSKAAGVYRSTLAEAVE 126
            P D+LLE++  PGN+ C DCG+   +WASV+YGI +CL CSG HR LGV +SFVRS+ +DSWT +++ AM++G N QM +F +   +  N+ I+ +Y S+AA +YR  +A  +E
Sbjct:    2 PSDVLLELRKLPGNDVCADCGAARPQWASVSYGIFVCLECSGQHRGLGVHLSFVRSVQMDSWTEREIKAMQVGGNKQMNDFLQEHGVPKNSSIKKKYNSRAAALYREVIAAKIE 115          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|1032149318|gb|OAO13342.1| (ARF-GAP protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 121.709 bits (304), Expect = 2.806e-31
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 0
Query:   13 FPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRI-SNTDIRVRYQSKAAGVYRSTLAEAVE 126
             P ++  E++  PGNN C DCG+   +WASVTYG  ICL CSG HR LGV +SFVRS  +DSW+ K++ AMR+G N  + +FF +  I  N  I+ +Y S AA +YR  +   VE
Sbjct:    4 MPIEVYNELRQLPGNNVCADCGAARPQWASVTYGTFICLECSGKHRGLGVHISFVRSAQMDSWSEKEIQAMRVGGNQNLNDFFAKYNIPKNATIKQKYNSPAAELYREIIKAKVE 118          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|1134897693|gb|OMJ94854.1| (hypothetical protein SteCoe_1880 [Stentor coeruleus])

HSP 1 Score: 120.553 bits (301), Expect = 6.050e-31
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   16 DILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVE 126
            D+L E+K  P NN C +CG  D++W+SV  GI +CL+C+G HR LGV VSFVRS+S+D+W  KQ+  M+LG N  ++EFF    ++  D  V+Y++KAA  YR  L +  E
Sbjct:    5 DVLRELKMIPENNCCFECGDQDSDWSSVNNGIFLCLKCAGLHRGLGVHVSFVRSVSMDTWQEKQIKLMQLGGNTALKEFFASYGLNELDASVKYKTKAAEYYREMLKQKAE 115          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|855305384|ref|XP_012895400.1| (uncharacterized protein [Blastocystis hominis] >gi|300175809|emb|CBK21352.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 116.701 bits (291), Expect = 6.758e-30
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 0
Query:   13 FPPDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISN-TDIRVRYQSKAAGVYR 118
             P ++L E++  PGNN C DCG+   +WASV+YG  ICL CSG HR LGV +SFVRS+ +DSWT  ++ AM++G N  ++ FF    ISN   IR +Y S AA +YR
Sbjct:    1 MPNEVLAELRALPGNNVCVDCGASRPQWASVSYGTFICLECSGKHRGLGVHLSFVRSVQMDSWTEDEIKAMQVGGNQSLRSFFEEHGISNDATIREKYSSPAAALYR 107          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|1134895765|gb|OMJ92957.1| (hypothetical protein SteCoe_4176 [Stentor coeruleus])

HSP 1 Score: 116.316 bits (290), Expect = 2.004e-29
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 0
Query:   16 DILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRISNTDIRVRYQSKAAGVYRSTLAEAVEKG 128
            +IL E+KN P N  C DC + + EW SV  GI +C+ C+G HR LGV +SF+RS+SLD+W  KQ+  M+LG N  ++EFF    +++ +I ++Y++KAA  YR  L    E G
Sbjct:    9 NILRELKNRPDNCYCFDCENENCEWTSVNNGIFLCINCAGQHRGLGVHISFIRSISLDTWQEKQLNLMKLGGNLALKEFFSTYELNDKEISIKYKTKAAEYYRQMLKVKSEGG 121          
BLAST of EWM25072.1 vs. NCBI_GenBank
Match: gi|1072236464|gb|OEU21192.1| (Arf GTPase activating protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 112.079 bits (279), Expect = 2.465e-29
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 0
Query:   15 PDILLEIKNSPGNNQCCDCGSFDTEWASVTYGILICLRCSGFHRSLGVSVSFVRSLSLDSWTPKQVFAMRLGSNFQMQEFFRRQRIS-NTDIRVRYQSKAAGVYRSTLAEAVE 126
            P  L  +K  PGNNQC DCG  + +WASV++G + CL CSG HRSLGV +SFVRS+++DSWT KQ+  M+ G N +  ++ + + I   T ++ +Y+S  A +Y+  L   VE
Sbjct:    6 PADLAVVKAMPGNNQCSDCGQKNPQWASVSFGNIFCLECSGVHRSLGVHISFVRSIAMDSWTEKQLALMKNGGNKKCNDYLQTKGIQPRTPVKAKYESDHAQLYKLILKAKVE 118          
The following BLAST results are available for this feature:
BLAST of EWM25072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106709|gb|EWM25072.1|6.407e-94100.00adp-ribosylation factor gtpase-activating [Nannoch... [more]
gi|553179637|ref|XP_005852734.1|1.084e-9099.23hypothetical protein NGA_0631820 [Nannochloropsis ... [more]
gi|1032151273|gb|OAO14898.1|4.261e-3345.22ADP-ribosylation factor GTPase-activating protein ... [more]
gi|950886540|ref|XP_014526150.1|1.156e-3248.21hypothetical protein JH06_3736 [Blastocystis sp. s... [more]
gi|855300971|ref|XP_012893941.1|1.163e-3248.25uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1032149318|gb|OAO13342.1|2.806e-3147.83ARF-GAP protein [Blastocystis sp. ATCC 50177/Nand ... [more]
gi|1134897693|gb|OMJ94854.1|6.050e-3147.75hypothetical protein SteCoe_1880 [Stentor coeruleu... [more]
gi|855305384|ref|XP_012895400.1|6.758e-3050.47uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1134895765|gb|OMJ92957.1|2.004e-2945.13hypothetical protein SteCoe_4176 [Stentor coeruleu... [more]
gi|1072236464|gb|OEU21192.1|2.465e-2945.13Arf GTPase activating protein, partial [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5604rna5604Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications