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Properties
| Property Name | Value |
|---|
| Product | rna polymerase i-specific transcription initiation factor rrn3 |
| Orig transcript id | gnl|cribi|Naga_100016g3.2899.mrna |
| Orig protein id | gnl|cribi|Naga_100016g3.2899 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:379675..382900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5601 ID=rna5601|Name=rna5601|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
TGTCCGCGACAGACGTTGTGTTTTCAGGAAATTGACTTGGCATTTCTCAT
TTATCCCAGGGATGCGCATCATCACGGGGGATGAGGGAGGGTTGCTCAAA
TCAATCGACCTCGAGGGTCAACGCATCGTCGTGGCTGGCCGCCAGGAACG
AGCGCGCGGCATCCGCGCGCTTTGCTGGTCGAGAGGAGGAGCTATGTATG
CCGCTGCTCGGCATGACGGTGTCGTCACTTTATGGGAAGACAACCCCACG
GTACCAAGACTGGCGAGAGAATGCAAAGGCGCCGTGAACGAGGACGTAAT
AGGGATGGCTTCCACGGACGCTCATCTCGCACGAAAGGAGGAGGAGGAAC
GGCTTGTAGTGGCGCATGAGAATGGGAAGATAAAGGTTTTGGCCCCGTGG
CAGTCTGTAGTCACCGGACACAAGGGTATTTGCATTGACGAGTGGCAAGT
GAAAGGACCGCTTACATGCATGGCCTGTAATTTTGGGTCTACCAATGTGG
TTGCGGCGGGCGGAAAGGAGAGGGAGCTGGGACTTTACGACGTAAGCACC
GGTGCACCGGTCTGGGAGGCCAGGAACGTGGCCCATGACAAGCTCAGTCT
CAGACAGCCCGTGTGGGTCACGGCCATCCATTTCCTGGATGTCGAGACAG
GGAGCGAGGGTGGGGGCGCGGGCCGTCTGGTGGCCATCGGGACGGGCTAC
AAGCAGGTTCGCATCTACGACGTCCGCGCGCCGGATCGGCGGCCTGTGCG
CGCCATGGAACTTCCTGAGGGGTATCGCATTACCGCCTTGGCCAGCGGGG
GCGTGCAGGGGGCGACAGGAGCGGGCTCAGAGCTTGTGAGCGGGGACGCG
GGAGGCACCGTGTATCGACTCGACGTGGGCAAGATGGCGCTATTGGGCCG
CATGGAGGGCCCAGCGGGCTCAGTCCGGGGCCTCGCAAGACACCCTAATC
CTGCGCTGCCTTTTGTGGCCCTTGCAGGTCTGGACCGCATGGCGCGTGTG
TACGACCTCCGGCGACCGAGAAAGGAGGCCTTTCGCTTCTATCTTAAGCA
GCGACTCACGGCGGTTTTGTTCGCGAAACAGGGCCGAAAGGGCTCGAAGG
GTATAGCAGAGGAGATAGATGAGGAAGTTCGAGCAGCAAAGGCAACAGGA
TCGAATGGCTGGAGGGAAATGGAGGATGATGTGTTAAGTTTGGATGACGA
GGAAGAGGAGGAGGGAGAGGGAGGCGATTACGACGGTGAAGAGGAGGAAA
AAGCTGAAGCATTGCGCAGAGGCAGATACAGTGATACACCTGAGAGGAAG
GAGAACGGCTTTAAGATCCAGCGAGTTTACGAGAGCGAGGAGGAGGTGGA
CGATGGGGGGGGGATGGGGGAGGACACGAGCGACGGTGGGGACCAGGATG
AGGAGGAGGAGGAGGAGGATGAGGAGGAAGATGAGGAGGGCGGAGAGGAG
GATGACGAGGATAAAGTGGCATTTGGGCGTCGCAATGACGGTCCCATACA
CTTAGAATTGAACATAGTCGGTGGAGGTGACGAAGAGGACGAGGACAGGA
GTGCCGAACAAGTGAGTAATCGGGTCCGTGAAAAGGGTATTGATAAACAC
CAGAGACAAAAATTGGGGCCTACAAAACGGCCACGAAGATGATGTATGTA
AATGAAACGGAACACTACTTCAAGATA back to topprotein sequence of rna5601 >rna5601-protein ID=rna5601-protein|Name=rna5601|organism=Nannochloropsis gaditana|type=polypeptide|length=859bp
MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFL
ALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKS
TFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNN
ARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQL
LVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLE
LDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYC
LDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDK
AISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVP
VLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTA
LLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEA
PYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVR
AAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVP
WGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYR
YWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESG
SEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFAS
AAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYR
GFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARK
ESVSSVGSW back to topmRNA from alignment at CM002466.1:379675..382900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5601 ID=rna5601|Name=rna5601|organism=Nannochloropsis gaditana|type=mRNA|length=3226bp|location=Sequence derived from alignment at CM002466.1:379675..382900+ (Nannochloropsis gaditana)
TACAGAGTATTGGACCCGCGTGGCTgggcaggcgtggagggggagtgtCG
CGTCGACGGGTATCGTGGGCCGCGTGTTCTGCGGCTCGAGTGGAAACGGG
CATCACTACCGCAGCAGCCAGCAAAACGAGACACATGGCGCCCGCACTCC
ACGCCCCGGAGTTAGTGCCCGTGAAGTCGTTTGTCAATACGGCGCTGGCC
ATGAAGCTTCGGGGGAACGGCACAAATTACGTACACATCGTCAAGACCAT
CAGGTAAGAGGCAAATCAAGGGGCAGGAAGGTTGCCCGACTACTGTCAGG
ATGAGGCATTTGTGAGCTTTTGTGTGGATATGATATATGCACGACGTGCA
TGAGCGTTTACAGACTGTAAGGAAGTGTGGTGGTATCCCAACTGTGTTTG
TTGATGAGAATATCTATTCTATTCCTTTCGCCCGAAATCACAACAGGTCA
CTTGACGATATGGAGACGCTTCCCCATGTTTTTCTTGCGCTGTCTACGTG
CATCACAACCATCACTGCCAACCCAGACGCGTTCAAAGAGTTGTTCTCGG
CACTCTTTCAATACGACTGGAGCGGAGGATGTCGGGCGCGAGACGCCtat
tcctgcctcctcgcccaccttgTCTCGGCCAAGAGCACCTTCGTGCACCC
CGTCCTTCAGATGCTGGCACGCAGCCTAGCTGCTCCAGGACCGCTCCAGG
ATGACACAGCAAAAAATGGCAATCGCATGGCCGCGGAGGGTTCGGGAAAC
GTCCAGGGCTTGATCGATCTGGGGGACACGAATAATGCCCGAAAAGCCGC
CGTGCACGAGAGCTTGAGGACCGTGCTGGCCTTGGTGCCTGCTGGATTTT
CCGAGCTCTACCCTGTCCTTGGCCAGGCGTTTCCCCATCGGCGCACCATG
GGGCCCGGGGGTGTGGTCAACTACGTGCGGCAGCTCTTGGTCCTGGCGAC
CGAGTACGCCACTGTCACGGAGCCGGCGAAAGGGACTAGTTCTGGGAGCA
CCCCGAGCGTTCAAAGCAAGCAACGTGGTAGTGGGACAGCCCTGGGCGAC
AAGCTGCTAGCATTGATCCTGGAGAGGTGCTTGGAGCTCGACGTGGAGAT
CAAGATCGAGGACTCGGGGGAGGTCAGTGTCGACCAGGCGGACAACgccg
cggaggcgggggtccACGCGGCCCACGACCCGTCGGCGGCCTTGGTCCTC
TCGGAGCATATGTATGTGGAGGATCCTACGTACTGTCTGGACATACATCA
TCCGATGCCGGGGCCGGAGGttgtgggggaggacggcgcgggcggggggg
agggagggggccaggagggggtggtAGACGAGATGGCGGATACGCTGGAC
TCGGTCATGCTCTTGCTCTTTCAGCACCTGGACAAGGCGATCAGCTGCGA
TGGGCAGGCGGCGTCCCGTCTGTTTGAAGGCCTGGGGCCCGTCTTGGATG
GCTCCATCCTCGCCACTCATCGATGCAAGTACGTCCAATTCGCCTTCTTT
TACTTGGCCGCGCGGGACCTCAGCGGCCGCGTCCCTGTCTTGCTGGTGGA
TCGGCTCTTGgcccgggcggtggaggaggacgacgcgccTATGGTCACCC
GCCTGGCGGCGCTTGCCTacctgtcctccttcctggtgCGATCGCGGGCT
CTGCCGGTCGAGGAGATCGTCCGAGCCCTGACCGCCTTGCTGGAGACGGC
GGAGGCATTCTTGGCTCGGCGGGCCGCGGATTTGATGGTGTATATGGATC
ACGCCTggctcaaggaggaggatccggGGAGCTGGGAGGCCGGTgtggtg
aagaaggaggagaggtggctgggggaagaagaggcgccctatggggggaa
gggtccgaccgaggaggacgcggacggcCAGGCGGACGACCGCCCCGTGT
TTTTCTACTCGCTCTGCCAGGCCATCTTCTACGTGGTGGCCTTCCACCAT
TCCAGCTcggagggcgaagacgtcCTGGGCGTGCGCGCCGCAGAGACAGG
AGCCGTCCGCCTGGGTGGTCAGCTGAAATCGCGGTTGGGCCGCTTGGCCT
GCTCGCCTTTGCGTCCCTTAGACCACTGCCTGGAGAGCGTCAAGCGCGAG
TTCCTTCGactcgcccgcctccatggcctcgtGCCTTGGGGCGCCTTGGG
cgggctgggcgggggggaggaggaggaagaactcGTCACGGAGGGCAACC
ACAACCCACTGAACTCCTACTTCCCCTTTGACCCGTTCCTGCTGAGGCGC
TCCTCAGGATTCGTCGCCAGACCAAATGTGTACCGGTACTGGCAAGCGAA
GGCGGTCTCGGATGtgatcgagaaggagaagagtgCCTGGGTGcgcgtca
aggaggaggagccggcggagggagtggacgggGCGAAGGGGGTCGCCAGG
GAGATCAAGGACGAACCCTGCAGTGACGAGAGtggaagcgaaggggaggg
aaggctttacgaggagggagatgaggagagcgaggggagtggctgggagg
aggcgcaggaggaagaggaggtcgaggaagaggagagggtctCTTGGCGC
CAGGCGTCGACCAGCGATAGGTCGGGGTTTGCGTCGGCAGCGCCTCCCTA
TTGGCCACAGGAACGGGCATGGGCAGcaaagggaatgggggaggtGGCAA
GGGAAGCCGGACGCCGGAAACGTGTCCGGAGGGACTCCATGGATTACGAC
AGCGACCTTCTCGGGGGTGGTGACGACCGGTACCGAGgcttcgacgagga
ggaggagggcgggacggaggacgaaggagtgGAAGCATCCGATCGTGTGG
CATTGGCGGCAAGAAAAGGGGTTCTGCTAAGCGACCACATTATTGAAGca
gtggcggtggcggcctcgGTGTCGCGTGCACGAAAAGAAAGCGTGAGTTC
GGTGGGAAGCTGGTAGAGATAGCAAGAACGGGGCTAGCAGATGTACATAC
ATCGCAATTTTGTGTTTAGAAAACGCTCGATAGCTTTGCAGGGGATGCAG
GAGAAGTGAGGCAGGAGCAATGTAGTCATTCGGCCCTGCTTTGACCAGAT
AAAGCTTCCTCGTGAAGGGCTCCGTCTGTAACAAAAGCAACTCGGCACCG
CGGCATCTCCTACTGATGTCATGTCTTCGGTGACAAATCTCAACAATTAT
tttctttcccgctcccccaCCGCATTCGCACCGGGTCACGGTATGTCATC
GGACGGGAAATTAATACATACAATCC back to topCoding sequence (CDS) from alignment at CM002466.1:379675..382900+ >rna5601 ID=rna5601|Name=rna5601|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002466.1:379675..382900+ (Nannochloropsis gaditana)
ATGCACGACGTGCATGAGCGTTTACAGACTGTAAGGAAGTGTGGTGGTAT
CCCAACTGTGTTTGTTGATGAGAATATCTATTCTATTCCTTTCGCCCGAA
ATCACAACAGGTCACTTGACGATATGGAGACGCTTCCCCATGTTTTTCTT
GCGCTGTCTACGTGCATCACAACCATCACTGCCAACCCAGACGCGTTCAA
AGAGTTGTTCTCGGCACTCTTTCAATACGACTGGAGCGGAGGATGTCGGG
CGCGAGACGCCtattcctgcctcctcgcccaccttgTCTCGGCCAAGAGC
ACCTTCGTGCACCCCGTCCTTCAGATGCTGGCACGCAGCCTAGCTGCTCC
AGGACCGCTCCAGGATGACACAGCAAAAAATGGCAATCGCATGGCCGCGG
AGGGTTCGGGAAACGTCCAGGGCTTGATCGATCTGGGGGACACGAATAAT
GCCCGAAAAGCCGCCGTGCACGAGAGCTTGAGGACCGTGCTGGCCTTGGT
GCCTGCTGGATTTTCCGAGCTCTACCCTGTCCTTGGCCAGGCGTTTCCCC
ATCGGCGCACCATGGGGCCCGGGGGTGTGGTCAACTACGTGCGGCAGCTC
TTGGTCCTGGCGACCGAGTACGCCACTGTCACGGAGCCGGCGAAAGGGAC
TAGTTCTGGGAGCACCCCGAGCGTTCAAAGCAAGCAACGTGGTAGTGGGA
CAGCCCTGGGCGACAAGCTGCTAGCATTGATCCTGGAGAGGTGCTTGGAG
CTCGACGTGGAGATCAAGATCGAGGACTCGGGGGAGGTCAGTGTCGACCA
GGCGGACAACgccgcggaggcgggggtccACGCGGCCCACGACCCGTCGG
CGGCCTTGGTCCTCTCGGAGCATATGTATGTGGAGGATCCTACGTACTGT
CTGGACATACATCATCCGATGCCGGGGCCGGAGGttgtgggggaggacgg
cgcgggcgggggggagggagggggccaggagggggtggtAGACGAGATGG
CGGATACGCTGGACTCGGTCATGCTCTTGCTCTTTCAGCACCTGGACAAG
GCGATCAGCTGCGATGGGCAGGCGGCGTCCCGTCTGTTTGAAGGCCTGGG
GCCCGTCTTGGATGGCTCCATCCTCGCCACTCATCGATGCAAGTACGTCC
AATTCGCCTTCTTTTACTTGGCCGCGCGGGACCTCAGCGGCCGCGTCCCT
GTCTTGCTGGTGGATCGGCTCTTGgcccgggcggtggaggaggacgacgc
gccTATGGTCACCCGCCTGGCGGCGCTTGCCTacctgtcctccttcctgg
tgCGATCGCGGGCTCTGCCGGTCGAGGAGATCGTCCGAGCCCTGACCGCC
TTGCTGGAGACGGCGGAGGCATTCTTGGCTCGGCGGGCCGCGGATTTGAT
GGTGTATATGGATCACGCCTggctcaaggaggaggatccggGGAGCTGGG
AGGCCGGTgtggtgaagaaggaggagaggtggctgggggaagaagaggcg
ccctatggggggaagggtccgaccgaggaggacgcggacggcCAGGCGGA
CGACCGCCCCGTGTTTTTCTACTCGCTCTGCCAGGCCATCTTCTACGTGG
TGGCCTTCCACCATTCCAGCTcggagggcgaagacgtcCTGGGCGTGCGC
GCCGCAGAGACAGGAGCCGTCCGCCTGGGTGGTCAGCTGAAATCGCGGTT
GGGCCGCTTGGCCTGCTCGCCTTTGCGTCCCTTAGACCACTGCCTGGAGA
GCGTCAAGCGCGAGTTCCTTCGactcgcccgcctccatggcctcgtGCCT
TGGGGCGCCTTGGGcgggctgggcgggggggaggaggaggaagaactcGT
CACGGAGGGCAACCACAACCCACTGAACTCCTACTTCCCCTTTGACCCGT
TCCTGCTGAGGCGCTCCTCAGGATTCGTCGCCAGACCAAATGTGTACCGG
TACTGGCAAGCGAAGGCGGTCTCGGATGtgatcgagaaggagaagagtgC
CTGGGTGcgcgtcaaggaggaggagccggcggagggagtggacgggGCGA
AGGGGGTCGCCAGGGAGATCAAGGACGAACCCTGCAGTGACGAGAGtgga
agcgaaggggagggaaggctttacgaggagggagatgaggagagcgaggg
gagtggctgggaggaggcgcaggaggaagaggaggtcgaggaagaggaga
gggtctCTTGGCGCCAGGCGTCGACCAGCGATAGGTCGGGGTTTGCGTCG
GCAGCGCCTCCCTATTGGCCACAGGAACGGGCATGGGCAGcaaagggaat
gggggaggtGGCAAGGGAAGCCGGACGCCGGAAACGTGTCCGGAGGGACT
CCATGGATTACGACAGCGACCTTCTCGGGGGTGGTGACGACCGGTACCGA
GgcttcgacgaggaggaggagggcgggacggaggacgaaggagtgGAAGC
ATCCGATCGTGTGGCATTGGCGGCAAGAAAAGGGGTTCTGCTAAGCGACC
ACATTATTGAAGcagtggcggtggcggcctcgGTGTCGCGTGCACGAAAA
GAAAGCGTGAGTTCGGTGGGAAGCTGGTAG back to top
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