EWM25090.1, cds5587 (CDS) Nannochloropsis gaditana

Overview
NameEWM25090.1
Unique Namecds5587
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:380011..382590 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25090.1
Productrna polymerase i-specific transcription initiation factor rrn3
Orig transcript idgnl|cribi|Naga_100016g3.2899.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:380011..382590 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3
Homology
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|585106728|gb|EWM25090.1| (rna polymerase i-specific transcription initiation factor rrn3 [Nannochloropsis gaditana])

HSP 1 Score: 1739.93 bits (4505), Expect = 0.000e+0
Identity = 859/859 (100.00%), Postives = 859/859 (100.00%), Query Frame = 0
Query:    1 MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW 859
            MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW
Sbjct:    1 MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW 859          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|298706668|emb|CBJ29597.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 199.134 bits (505), Expect = 2.085e-49
Identity = 199/743 (26.78%), Postives = 309/743 (41.59%), Query Frame = 0
Query:   40 DDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAIS--------------------CDGQAAS----------------------------------RLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVK----KEERWLGEE---------------EAPYGGKGP----------TEEDADGQADDRP---VFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLA--RLHGLVPWGALGGLGGGEEEEELVTEG---------------------------------------NHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAK 655
            DD ETL  ++L LS C+T I+  PD FKEL  ALF++DW G  +   ++S LL HLVSA ST + P + ML R+L         T ++   +  EG+ +   L         R+  VH +L+  L LVP+G S+L+ VL Q +PHRR +    + +Y    L +  +YA + E                         + +L LI+E+ LE+DVEIKI D+GE  +D  ++  +A                 ++  D              +VV  DG    +    +  VDEMAD LD VML++F +LD+ ++                    C+  AA+                                  RL + L  V + +IL THR K+VQF  F+ + R  +  +   LV +L+   + ++  P +TR +++AYL+SFL R+  +    +  A+ +LL+ A  +L  + AD  V      L       +E  V      + + W G                 +AP                    +   +  RP   + FYS+CQA FYV+ F      G+++  +   ++ AV           RL   PL PL  CL++V+REF RL    +   +    L  L G  EE   V++                                          NPL+S+FPFDP+LLRRS  ++ +  +Y  W+A+
Sbjct:   21 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVL-------TPRD---LDCEGNVDPAAL--------TRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRR-LRAEVLSDYALHALRV-VQYAPLIE-------------------------ESVLRLIIEKGLEIDVEIKIMDTGEAVIDDEEDECDA-----------------LFTMD--------------DVV--DGTADKKKQTTDE-VDEMADKLDGVMLVVFNYLDQRLTANASLPPETILGTPVAGDGGCEAAAATQAVLQGDEAGSDSGTLKGRGGGSTGGMQGMEPVARLLKSLLLVFEENILPTHRSKFVQFVLFFASGR--ARGLGYALVSKLVG-VLGDESRPKLTRQSSVAYLASFLARASFVDPSLVSTAVQSLLDWAGQYL-DQYADASVATPVQALGTPSSKGFETPVATRVRARPQSWHGNHPRRSANGGDGGGGVMQAPMSAMAARSGAGGSGGVGVGSSSSSSKSRPADHMLFYSVCQATFYVMCF-----RGDELAAMEGFDSQAV--------IWQRLLTCPLYPLRRCLDTVRREFARLCCGLMDAYLDRDLLEHLAGISEERSQVSQTITVGSSFSCSTPRSSSSMSMSSNAMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHVYIDQ--MYNTWKAQ 665          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1173959955|gb|OQS06128.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Thraustotheca clavata])

HSP 1 Score: 166.007 bits (419), Expect = 1.218e-38
Identity = 166/655 (25.34%), Postives = 271/655 (41.37%), Query Frame = 0
Query:   27 YSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSG-----------NVQGLIDLGDTN-NARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDH--CLESVKREFLRLARLHGLVP---------WGALGGL-----GGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
            YS+  ++   +S DD E    +FLAL   IT +T N DA+++L   +F +D+       DAY  LL HLV+A++ FV P ++ML R+ +   P     AK  NRM   G+            +V+ ++   +     R   VH++   VL LVPA    ++  +   FPH+R +     + Y+  +L L T        AKG                   L +++L L++E+ + +DVEIK++++ E      D                       +++D   C+D       PE                 ++DE AD LD +ML +F + ++ I+ DG A   LF  L    D ++L THR KY QF  F++A   L+     L + +L++ +++    P VTR +  +YL+S++ R++ LPV  +   L  +L    A       D+        L++ +PG+  + V                   P   +              L Q   Y+V F      G D+       +    LG Q      R+   PL P        SV  EF+ +A L  L+P         W ++              E  V + +    + +FPFDP+LLRRS  F+    +Y +W+
Sbjct:  217 YSLILSK-FEKSTDDKER-SQLFLALPRAITKLTMNMDAYRDLIHQIFSFDFMASPVVVDAYIRLLTHLVTAQTAFVQPTIKMLVRNFSRIAPPAQPVAKVVNRMTTMGTQIRAVVSSTPVLSVEEILAQFEAQLQQRYENVHKAFEIVLRLVPASIHMVFECVCDFFPHKR-LETSFQLAYLNNVLKLTTY-------AKG-------------------LQERVLGLLVEKLVAIDVEIKLDNTEEDVFTMDD-----------------------FLDDDC-CVD-------PE---------------SDMIDENADKLDHLMLAVFTYFEQEIARDGNAHIALFNYLLKSFDQAVLNTHRSKYPQFLLFFIA--KLAQEHQELFLSQLISVSLDSKFPP-VTRHSCASYLASYVARAKYLPVMTVKHTLFHVLRWIHA-----QVDI--------LEQAEPGAIPSTVC-----------------DPLTTE--------------LIQTACYIVCF-----RGMDLCASETGYSFVRSLGWQ------RILTCPLMPFRQPGFQPSVASEFISVAELLLLLPDECIEQLLTWISITSTTKNVSSSAMNLERSVVDKDSPDRSCFFPFDPYLLRRSFKFIG--PLYLFWK 736          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|325186713|emb|CCA21261.1| (RNA polymerase Ispecific transcription initiation factor rrn3 putative [Albugo laibachii Nc14])

HSP 1 Score: 166.007 bits (419), Expect = 1.650e-38
Identity = 190/729 (26.06%), Postives = 291/729 (39.92%), Query Frame = 0
Query:   48 VFLALSTCITTITANPDAFKELFSALFQYDW--------SGGCRAR----DAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQA------ASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRP-------VFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLG--RL--ACSPLRPLDHCLESVKREFLRLARLHGLV-PWGA------LGGLGGGEEEE----ELVTEGNHNPLN-------SYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYE-EGDEESEGSGWEEAQEEEE 728
            + LAL+ CI+ IT   +  + +F  LF++ +        S  C        AY+  L +LVS++S F  P L ML R+LA P    D T                   DL    ++R   VHE+L+ VL ++P   + L  +L ++FPH+R M     V YVR L+ + T YA                          AL ++++AL ++R +++DVEIK+++    +V+                       E M+  D    LD + P+                 G    +DEMAD LD +ML++F++L ++    G+       A+ +F+ L    + SIL THR KY QF  FY+       +     +  L+   ++    P VTR    AYL+SFL R++ +         T  LE A   L R   D +      + +    G     VV+K           +G         D  ADDRP         F S  Q + YVV +             R  E      G      LG  RL    SP  PL  C +SV  EFL +A L  L+ P  A      +   G    +     + V   +H   N       ++FPFDP+LLRRS  F+    +Y YW+    +               +E A  ++  K +  E +DE   D   ++GE  +   E ++E +    E + E +E
Sbjct:   95 ILLALTRCISRITREAEVLQPVFDTLFKFSFYTCHEGEKSSACLETIANISAYTSFLLNLVSSQSVFAIPTLHMLVRNLARPKDF-DST-------------------DLDAFISSRTEYVHEALQRVLTIIPTSANVLISILSKSFPHKR-MAAIVQVTYVRHLMKI-TNYAP-------------------------ALKEQIIALTVDRLVQIDVEIKLDEKDMDTVE-----------------------EKMFTMDDF--LDENLPV-----------------GDVEDIDEMADKLDEMMLVMFEYLGQSSGQVGENDSVTHEAAHIFKSLLRAFELSILNTHRSKYPQFLLFYVC--QYHSKFQNAFISHLITACIDPK-IPAVTRQNCGAYLASFLARAKYVS--------TTYLEKALYHLLRYLHDQL----DIYERSHQSGQASTSVVEK-----------FGN--------DRAADDRPSASLFHNAIFISTLQTVCYVVCY-------------RGLEMVNAPRGYDFLRSLGWERLFDTISPC-PLVFCQQSVTLEFLNVAELFQLISPECAERVDQSISSFGSSLPKNSAGRDSVQSSSHTICNLNWTLSHTFFPFDPYLLRRSFKFIGP--LYLYWKHADPT--------------SQENATNLEHTKRIIEEFEDESNGDGETTDGEIDVSSVESEDECDDKDHELSMEIQE 670          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1173942765|gb|OQR91711.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Achlya hypogyna])

HSP 1 Score: 157.147 bits (396), Expect = 2.252e-36
Identity = 162/658 (24.62%), Postives = 259/658 (39.36%), Query Frame = 0
Query:   32 ARNHNRSLDDMET------LPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNG-NRMAAEGS------------GNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRR--TMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCL--ESVKREFLRLARLHGLVP---------W----GALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
            A N+N  L   E          +FLAL   I+ +TA+ DA++EL   +F +D+       D+Y+ LL HLV+A++ FV P ++ML R+   P P    T+  G  R+   G+             +V  L    +    R   VH +   VL LVPA    ++  L  AFPH+R  T+     +N + +L          T  AKG                   L +++L LI+E+ + +DVEIK++++                                  E+  + +D        + + +D     E      +VDE AD LD +ML +F + D+ ++ D  A + LF  L    D S+L TH+ KY QF  FY+A      +   L + +L++ +++    P VTR +  +YL+S++ R++ + +  I   L  LL                                        RW+   +       P +  A    D        + Q   Y+V F      G ++ G  A       LG Q      R+   PL P    +   SV  EF+ +A L  L+P         W      +     G   E  + E N      +FPFDP+LLRRS  ++    +Y +W+
Sbjct:   30 ATNYNLILSKFEKSASDKDRSQLFLALPRSISKLTASMDAYRELIHHIFMFDFMASPVVTDSYTRLLTHLVTAQTAFVQPAIKMLVRNFVRPEPPAIATSVKGIPRITTLGTQIRHVEATVPAVSSVDILAQFEEAVVRRYENVHAAFAKVLELVPAAIHMVFECLCSAFPHKRRETLSQLAYLNNILKL----------TTYAKG-------------------LQERVLGLIVEKLVAIDVEIKLDNT----------------------------------EEDVFTMD--------DFLDDDCCADPEA----DMVDENADKLDHMMLAVFTYFDQLLAADPSAHATLFTYLLKSFDQSVLNTHQSKYPQFLLFYMAKTATEHQ--ELFLSQLISVSLDPKIPP-VTRRSCASYLASYVARAKYVSLMAIKHTLFHLL----------------------------------------RWI-HSQVDLLDNLPVDGIAAAACDPLTA---DVIQTACYIVCF-----RGLELCGSEAGYGFVRSLGWQ------RILMCPLMPFRQPVFQPSVANEFVNVAELLLLLPDECIEELLQWISTSTTVKSASHGMNLERSIVEKNTTNQACFFPFDPYLLRRSFKYIG--PLYLFWK 552          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1210512524|dbj|GAX28381.1| (RNA polymerase I-specific transcription initiation factor RRN3 [Fistulifera solaris])

HSP 1 Score: 157.147 bits (396), Expect = 5.248e-36
Identity = 188/708 (26.55%), Postives = 282/708 (39.83%), Query Frame = 0
Query:   86 DAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLA---ARDLSGRVPVLLVDRLLA-RAVEEDDAP---MVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYV--------VAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEG-------------------------------NHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ---AKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEG---RLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQAS 741
            DA+  LL  LVSA ST + P +  L + L      Q+D +K                         R   VH +L T++ + P G  E++P++    P R+         Y   L VL  EY    E                          +L+AL+++RCLE+DVEIKI D GEVS+D+           +HDP                + LD+       EV+ ED             VDEMAD LDS+M +LF++++     D   A  +F  L    + SIL TH+ K+VQF   +L    +R +       L+ R  A + +E    P   +  R  A  YL+SF+ R+  +  E I  A++ALL  AEA++A                                    +  A Y        D   Q     + FY++CQ+ FY+        + FH ++    D       E   + +  +   R  RL   PL+PL +CLESV+ EFL +++   L+    L  L    EE+ L +E                                  NPL+S+FPFDP+LL RSS  V     Y +W+     +VSD    E++A   ++++E  E  D +   A    D+  +D S  E EG   R +E    +S  S       E  V +E  +  ++AS
Sbjct:  162 DAHFNLLVVLVSANSTLLVPTISALWKLLIT----QEDASKE------------------------RWYRVHAALATIMFMCPTGKMEMFPIVSSNTPFRKKEESSLRWYYKNCLDVL--EYIASME-------------------------GELIALMIDRCLEMDVEIKINDGGEVSIDRD----------SHDPG--------------IFQLDLEEK--AKEVLPEDAT-----------VDEMADRLDSIMKILFEYIESRCEQDLSNAYNIFSILLRSFEKSILITHKSKFVQFLILHLCGLESRQMEHDAEASLLYREYASKLIEIILDPYRAIAIRQCAACYLASFVSRATYVCAETICEAVSALLRWAEAYVATL----------------------------------QSSAVYAV------DIRNQCSLHSL-FYTVCQSSFYIMCFRGVDAIEFHRNAISSSDSAYY---EPSRIDISAE---RWTRLCEHPLQPLRYCLESVRSEFLLISKNFDLISEQVLSQLVA--EEKRLASEAGKQRKKRRSTISTPATLEKERQTGGVGGMGHGMNPLDSFFPFDPYLLHRSSKHVE--PFYGHWEEPLPSSVSDDDNNEENA--DLEQDEILEEDDSSDTDAESEGDDSDND-SLREHEGGDDRSFEPMSYDSNASDISNKSAESSVFKEPSIDDKRAS 723          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|813118833|ref|XP_012196076.1| (hypothetical protein SPRG_02135 [Saprolegnia parasitica CBS 223.65] >gi|641539518|gb|KDO33327.1| hypothetical protein SPRG_02135 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 154.836 bits (390), Expect = 1.769e-35
Identity = 167/658 (25.38%), Postives = 260/658 (39.51%), Query Frame = 0
Query:   32 ARNHN-------RSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSG--------------NVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCL--ESVKREFLRLARLHGLVPWGALGGL-------------GGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
            A N+N       +S DD E    +FLAL   I+ +TAN DAF +L   +F +D+       +AY  LL HLV+A++ FV P +++L R+   P P        G        G               V  L    +   AR   VHE+   VLALVPA    ++  +   FPH+R       V  + QL  L      +T  AKG                   L +++L L++E+ + +DVEIK++++ E      D                       +++D   C+D                          +VDE AD LD++ML +F H ++ ++ D    + LF  L    D S+L TH+ KY QF  FY+A    +     L + +L++ +++    P VTR +  +YL+S++ R++ LP   I   L  LL                                        RW+  +     G  P   DA   A   P+   ++ Q   Y+V F      G ++ G  A       LG Q      R+   PL P    +   SV  EF+ +A L  L+P  ++  L               G   E  + E + +    +FP+DP+LLRRS  F+    +Y +W+
Sbjct:   39 ATNYNLILSKFEKSTDDKER-SQLFLALPRSISKLTANMDAFHDLVHQIFTFDFMASPIVIEAYIRLLTHLVTAQTAFVQPTIKVLVRNFLRPTPPTIAAPMKGATRIMTTLGIAIRPVIATAPVVPAVDVLAQFEEQVVARYKYVHEAFAKVLALVPASIHMVFECICGLFPHKR-------VETLSQLAFLK-NVLHLTTYAKG-------------------LQERVLGLLVEKLVAIDVEIKLDNTEEDVFTMDD-----------------------FLDDDC-CVD----------------------PTSDMVDENADKLDNMMLTVFTHFEQLLATDPTVHTALFTFLLKSFDASVLNTHQSKYPQFLLFYIAKT--APEHQELFLSQLISVSLDTKIPP-VTRHSCASYLASYVARAKYLPTTAIKHTLFHLL----------------------------------------RWIHGQVDLLDGLAP---DAIASAACDPL-TTAVIQTACYIVCF-----RGLELCGSEAGYGFVRSLGWQ------RILTCPLMPFRQPVFQPSVANEFVNVAELLLLIPDESVEQLLLWISTSTASKSSSHGMNLERSIVEKDTSKRACFFPYDPYLLRRSFRFIG--PLYLFWK 562          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|698775782|ref|XP_009820935.1| (hypothetical protein H257_00104 [Aphanomyces astaci] >gi|574123060|gb|ETV88535.1| hypothetical protein H257_00104 [Aphanomyces astaci])

HSP 1 Score: 152.14 bits (383), Expect = 1.278e-34
Identity = 176/649 (27.12%), Postives = 266/649 (40.99%), Query Frame = 0
Query:   27 YSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSL-----AAP---GPLQDDTAKNGNRMAAEGSGNVQG-------LIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLE--SVKREFLRLARLHGLVPWGALGGLGGGEEEEELV-----TEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
            Y++  ++  N S D  E    ++L L  CI+T+T + DA+ EL   ++ +D+       DAY  L+ HLV+A ++F+ P + ML R+L      AP    PL         R  + G   V               +   R A+VH +   VL LVPA    ++  L + +PH+R   P   ++Y+  L  L T        AKG                   L +++L L++E+ + +DVEIK+E            A E  V    D           +++D T C+D            E+  G          VDEMAD LD +ML  F +L+ A S       RLF  L    D SIL THR KY QF  FY+       +   LL+ +L++ A++    P VTRL+  +YL+S++ R++ L +  I   L                 +M Y+ H  +   D  +  A ++                  P     D    D       L Q+  Y+V F      G ++ G  A  T    LG        R+  S L P+ H     +V  EF+ +A L GLV   A+ GL  G ++         +         +FPFDP+LLRRS  F+    +Y YW+
Sbjct:   49 YNVLVSKLENTSED--EERRQLYLVLPRCISTLTKDLDAYHELVHRIYTFDFLTTMPIIDAYIRLITHLVTAHTSFLQPTIHMLVRNLLRVPRPAPLSVSPLAVQIKSTLTRRVSIGIPTVNSGPSEAELAAQFEASLQQRFASVHAAFEKVLHLVPASIHHVFQCLCEYYPHKRLETPIQ-LSYLTNLFQLTTY-------AKG-------------------LQERVLGLVVEKLVAIDVEIKLE------------ATEEDVFTMDD-----------FLDDAT-CVD-----------PENLKG----------VDEMADKLDHLMLATFTYLEAAAS----DHPRLFAFLLKSFDQSILNTHRSKYPQFLLFYICKSPSEHQ--ELLLSQLISVALDA-KVPPVTRLSCSSYLASYVARAKYLGLNAIKHTLF---------------HIMRYI-HGQVDVLDEAA--AAII------------------PPSSIVDKCLVD-------LVQSACYIVCF-----RGLELCGSEAGYTFVRSLGWT------RVLTSRLHPMRHAAFHGAVAAEFMNVAELLGLVSDEAIEGLWEGMKQAPSAKTLERSSSAATASMCFFPFDPYLLRRSFRFIG--PLYLYWK 560          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|953497313|emb|CEG41622.1| (rna polymerase i-specific transcription initiation factor rrn3 [Plasmopara halstedii])

HSP 1 Score: 152.14 bits (383), Expect = 3.204e-34
Identity = 182/704 (25.85%), Postives = 286/704 (40.62%), Query Frame = 0
Query:   48 VFLALSTCITTITANPDAFKELFSALFQYDWSGG---CRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAP----------GPLQDDTAKN------GNRMAAEGSGNVQGLIDLGDTN--------NARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGE----------VSVDQADNAA-EAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVV--KKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLG--RLACSP--LRPLDHCLESVKREFLRLARLHGLVPWGAL----GGLGGGEEEEELVTE-------------------GNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ-----AKAVSDVIEKEKSAWVRVKEEEPAEG 679
            +F AL  CI+T+     A++ L   LF++D       C   D Y+  + HLVS+ + +V P L ML R++  P               D AK+      GN +  E S +  G I+  DT          AR  A H++L+ VL LVP   + L+P+L + FPH+R M     V Y+R +L        VTE   G                   L +++L L+L++ + +DVEIK+++S E            +  +DN +      A       LV+ +H+                      E  A             E+ADT     +L  +  +   + + + A+ +F+ L  V + SIL THR KY QF  FY+   D   +   + + +LLA +++    P  TR +  AYL+SFL R++ + V  + +AL  LL        +   D M   D A   ++D      G    K EER L E E          E    +     +F  SL Q + Y++ F          L +  ++ GA   G +    LG  RL  +     PL +C ++V  EFL L     LV    L      +G       L  +                   G   PL ++FPFDP+LLRRS  ++    +Y +W+     +    D++   K+   +++E    EG
Sbjct:   96 IFRALPRCISTMAREHHAYRALLDVLFKFDLLASGDPCEVED-YTNFIVHLVSSNTIYVVPTLHMLVRNMRRPQMKELPFDLRAQFDADQAKDEAIQRAGNIVIGE-SFSTNGSIEAHDTGELSLEERIQARFEAAHQTLKRVLVLVPTATNVLFPILCEHFPHKR-MDASTQVAYLRNVL-------RVTEYVGG-------------------LRERVLGLVLDQLVAIDVEIKLDESEEDVFTMDDFLDDDLLPSDNTSGRMDEMADKLDKMMLVMFQHI----------------------EQCATSSPSTS------ELADT-----VLPIEESNTYNNLNMRQATLIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMD--PQFQDVFISQLLATSLDPQTPP-TTRHSCGAYLASFLARAKYISVAYLQKALYHLL--------KWLHDQMDLYDAAHEDQQDKVERYVGTTTPKNEERVLEESEK--------LEIKSVRGFQESIFISSL-QTVCYMLCFRG--------LEIATSDDGA---GYEFLRSLGWERLLITNTGYCPLAYCQQTVATEFLNLVETFDLVSEECLERVDQAIGTATVPANLAAKSMEHSKKPTVGSASASTLIGQRQPLETFFPFDPYLLRRSFRYIG--PLYLFWKHADPTSSENCDLLNSVKATIRQMQETAEDEG 704          
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1176123138|ref|XP_020632915.1| (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Orbicella faveolata])

HSP 1 Score: 134.806 bits (338), Expect = 3.537e-29
Identity = 156/636 (24.53%), Postives = 254/636 (39.94%), Query Frame = 0
Query:   45 LPHVFLALSTCITTITANPDAFKELFSALFQYDWS-GGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGV-VNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIK----------IED---SGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQ----AASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGA--------LGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
            L    +AL++C  ++T   D    L        W+  G +  + +   L  LVSA++ ++   L+M+ + L  PG  +D   K G+  A           DL           HE+L+ VL +VPA    L PVL + FP+ +   P     +YV+ LL + T+Y               P ++SK           +L L++   + +DVEI           IE+     EV +D+A+ A EA   A HD                  C++                            +EMAD LD +M +LF+++ +    +G+    A + LF  L  V +  IL TH   +VQ+  F + + DL     +L V     + +E+ + P + R A  AY++SF+ R++ +P+  +   L                DL+ +  H ++   D G             LG + + YG                   FYS+CQA+FY+  F H     + +L +        RL       L R+    + PL  CL +V + F  + R H LV            +  +        ++     N L+S+FPFDP+LLRRSS F+   + Y+ W+
Sbjct:   54 LQRYLMALTSCSASLTKQYDT---LVGTALNTRWAVCGDKTVEEFIEFLTSLVSAQTYYLRACLRMIVK-LFLPGVSKDGHLKTGDSEA-----------DLDKV----FCHAHEALQAVLEVVPAVPQFLIPVLSENFPYMK--KPTIFQASYVKNLLQI-TKY--------------LPDLRSK-----------ILELVIHNLITIDVEIPKHELEHNEAAIEEDHTQFEVDMDEANIAVEAS--ANHDEEI---------------CME----------------------------NEMADKLDILMEILFKYIHEVTHINGEHSVDAGTELFNELLLVFENVILPTHASCHVQYVMFQVCSFDLDFANSLLDV---CWKKIEDPNTPSILRQACAAYIASFIARAKYIPISTVQTCL----------------DLVAHWIHCYIDMNDAGC------------LGPDVSRYGP------------------FYSVCQALFYMFIFRH-----KQLLDLEEGLKYLRRLN------LDRIVTCRMNPLKVCLPTVVKMFAHITRQHELVFCYTIIEQNNRMMLPVATPTSSRAVLNLSFMNQLDSFFPFDPYLLRRSSKFIK--SCYQEWE 535          
The following BLAST results are available for this feature:
BLAST of EWM25090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106728|gb|EWM25090.1|0.000e+0100.00rna polymerase i-specific transcription initiation... [more]
gi|298706668|emb|CBJ29597.1|2.085e-4926.78conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173959955|gb|OQS06128.1|1.218e-3825.34RNA polymerase I-specific transcription initiation... [more]
gi|325186713|emb|CCA21261.1|1.650e-3826.06RNA polymerase Ispecific transcription initiation ... [more]
gi|1173942765|gb|OQR91711.1|2.252e-3624.62RNA polymerase I-specific transcription initiation... [more]
gi|1210512524|dbj|GAX28381.1|5.248e-3626.55RNA polymerase I-specific transcription initiation... [more]
gi|813118833|ref|XP_012196076.1|1.769e-3525.38hypothetical protein SPRG_02135 [Saprolegnia paras... [more]
gi|698775782|ref|XP_009820935.1|1.278e-3427.12hypothetical protein H257_00104 [Aphanomyces astac... [more]
gi|953497313|emb|CEG41622.1|3.204e-3425.85rna polymerase i-specific transcription initiation... [more]
gi|1176123138|ref|XP_020632915.1|3.537e-2924.53RNA polymerase I-specific transcription initiation... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5601rna5601Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications