EWM25090.1, cds5587 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|585106728|gb|EWM25090.1| (rna polymerase i-specific transcription initiation factor rrn3 [Nannochloropsis gaditana]) HSP 1 Score: 1739.93 bits (4505), Expect = 0.000e+0 Identity = 859/859 (100.00%), Postives = 859/859 (100.00%), Query Frame = 0
Query: 1 MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW 859
MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW
Sbjct: 1 MHDVHERLQTVRKCGGIPTVFVDENIYSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQASTSDRSGFASAAPPYWPQERAWAAKGMGEVAREAGRRKRVRRDSMDYDSDLLGGGDDRYRGFDEEEEGGTEDEGVEASDRVALAARKGVLLSDHIIEAVAVAASVSRARKESVSSVGSW 859
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|298706668|emb|CBJ29597.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 199.134 bits (505), Expect = 2.085e-49 Identity = 199/743 (26.78%), Postives = 309/743 (41.59%), Query Frame = 0
Query: 40 DDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAIS--------------------CDGQAAS----------------------------------RLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVK----KEERWLGEE---------------EAPYGGKGP----------TEEDADGQADDRP---VFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLA--RLHGLVPWGALGGLGGGEEEEELVTEG---------------------------------------NHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQAK 655
DD ETL ++L LS C+T I+ PD FKEL ALF++DW G + ++S LL HLVSA ST + P + ML R+L T ++ + EG+ + L R+ VH +L+ L LVP+G S+L+ VL Q +PHRR + + +Y L + +YA + E + +L LI+E+ LE+DVEIKI D+GE +D ++ +A ++ D +VV DG + + VDEMAD LD VML++F +LD+ ++ C+ AA+ RL + L V + +IL THR K+VQF F+ + R + + LV +L+ + ++ P +TR +++AYL+SFL R+ + + A+ +LL+ A +L + AD V L +E V + + W G +AP + + RP + FYS+CQA FYV+ F G+++ + ++ AV RL PL PL CL++V+REF RL + + L L G EE V++ NPL+S+FPFDP+LLRRS ++ + +Y W+A+
Sbjct: 21 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVL-------TPRD---LDCEGNVDPAAL--------TRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRR-LRAEVLSDYALHALRV-VQYAPLIE-------------------------ESVLRLIIEKGLEIDVEIKIMDTGEAVIDDEEDECDA-----------------LFTMD--------------DVV--DGTADKKKQTTDE-VDEMADKLDGVMLVVFNYLDQRLTANASLPPETILGTPVAGDGGCEAAAATQAVLQGDEAGSDSGTLKGRGGGSTGGMQGMEPVARLLKSLLLVFEENILPTHRSKFVQFVLFFASGR--ARGLGYALVSKLVG-VLGDESRPKLTRQSSVAYLASFLARASFVDPSLVSTAVQSLLDWAGQYL-DQYADASVATPVQALGTPSSKGFETPVATRVRARPQSWHGNHPRRSANGGDGGGGVMQAPMSAMAARSGAGGSGGVGVGSSSSSSKSRPADHMLFYSVCQATFYVMCF-----RGDELAAMEGFDSQAV--------IWQRLLTCPLYPLRRCLDTVRREFARLCCGLMDAYLDRDLLEHLAGISEERSQVSQTITVGSSFSCSTPRSSSSMSMSSNAMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHVYIDQ--MYNTWKAQ 665
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1173959955|gb|OQS06128.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Thraustotheca clavata]) HSP 1 Score: 166.007 bits (419), Expect = 1.218e-38 Identity = 166/655 (25.34%), Postives = 271/655 (41.37%), Query Frame = 0
Query: 27 YSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSG-----------NVQGLIDLGDTN-NARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDH--CLESVKREFLRLARLHGLVP---------WGALGGL-----GGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
YS+ ++ +S DD E +FLAL IT +T N DA+++L +F +D+ DAY LL HLV+A++ FV P ++ML R+ + P AK NRM G+ +V+ ++ + R VH++ VL LVPA ++ + FPH+R + + Y+ +L L T AKG L +++L L++E+ + +DVEIK++++ E D +++D C+D PE ++DE AD LD +ML +F + ++ I+ DG A LF L D ++L THR KY QF F++A L+ L + +L++ +++ P VTR + +YL+S++ R++ LPV + L +L A D+ L++ +PG+ + V P + L Q Y+V F G D+ + LG Q R+ PL P SV EF+ +A L L+P W ++ E V + + + +FPFDP+LLRRS F+ +Y +W+
Sbjct: 217 YSLILSK-FEKSTDDKER-SQLFLALPRAITKLTMNMDAYRDLIHQIFSFDFMASPVVVDAYIRLLTHLVTAQTAFVQPTIKMLVRNFSRIAPPAQPVAKVVNRMTTMGTQIRAVVSSTPVLSVEEILAQFEAQLQQRYENVHKAFEIVLRLVPASIHMVFECVCDFFPHKR-LETSFQLAYLNNVLKLTTY-------AKG-------------------LQERVLGLLVEKLVAIDVEIKLDNTEEDVFTMDD-----------------------FLDDDC-CVD-------PE---------------SDMIDENADKLDHLMLAVFTYFEQEIARDGNAHIALFNYLLKSFDQAVLNTHRSKYPQFLLFFIA--KLAQEHQELFLSQLISVSLDSKFPP-VTRHSCASYLASYVARAKYLPVMTVKHTLFHVLRWIHA-----QVDI--------LEQAEPGAIPSTVC-----------------DPLTTE--------------LIQTACYIVCF-----RGMDLCASETGYSFVRSLGWQ------RILTCPLMPFRQPGFQPSVASEFISVAELLLLLPDECIEQLLTWISITSTTKNVSSSAMNLERSVVDKDSPDRSCFFPFDPYLLRRSFKFIG--PLYLFWK 736
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|325186713|emb|CCA21261.1| (RNA polymerase Ispecific transcription initiation factor rrn3 putative [Albugo laibachii Nc14]) HSP 1 Score: 166.007 bits (419), Expect = 1.650e-38 Identity = 190/729 (26.06%), Postives = 291/729 (39.92%), Query Frame = 0
Query: 48 VFLALSTCITTITANPDAFKELFSALFQYDW--------SGGCRAR----DAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQA------ASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRP-------VFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLG--RL--ACSPLRPLDHCLESVKREFLRLARLHGLV-PWGA------LGGLGGGEEEE----ELVTEGNHNPLN-------SYFPFDPFLLRRSSGFVARPNVYRYWQAKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEGRLYE-EGDEESEGSGWEEAQEEEE 728
+ LAL+ CI+ IT + + +F LF++ + S C AY+ L +LVS++S F P L ML R+LA P D T DL ++R VHE+L+ VL ++P + L +L ++FPH+R M V YVR L+ + T YA AL ++++AL ++R +++DVEIK+++ +V+ E M+ D LD + P+ G +DEMAD LD +ML++F++L ++ G+ A+ +F+ L + SIL THR KY QF FY+ + + L+ ++ P VTR AYL+SFL R++ + T LE A L R D + + + G VV+K +G D ADDRP F S Q + YVV + R E G LG RL SP PL C +SV EFL +A L L+ P A + G + + V +H N ++FPFDP+LLRRS F+ +Y YW+ + +E A ++ K + E +DE D ++GE + E ++E + E + E +E
Sbjct: 95 ILLALTRCISRITREAEVLQPVFDTLFKFSFYTCHEGEKSSACLETIANISAYTSFLLNLVSSQSVFAIPTLHMLVRNLARPKDF-DST-------------------DLDAFISSRTEYVHEALQRVLTIIPTSANVLISILSKSFPHKR-MAAIVQVTYVRHLMKI-TNYAP-------------------------ALKEQIIALTVDRLVQIDVEIKLDEKDMDTVE-----------------------EKMFTMDDF--LDENLPV-----------------GDVEDIDEMADKLDEMMLVMFEYLGQSSGQVGENDSVTHEAAHIFKSLLRAFELSILNTHRSKYPQFLLFYVC--QYHSKFQNAFISHLITACIDPK-IPAVTRQNCGAYLASFLARAKYVS--------TTYLEKALYHLLRYLHDQL----DIYERSHQSGQASTSVVEK-----------FGN--------DRAADDRPSASLFHNAIFISTLQTVCYVVCY-------------RGLEMVNAPRGYDFLRSLGWERLFDTISPC-PLVFCQQSVTLEFLNVAELFQLISPECAERVDQSISSFGSSLPKNSAGRDSVQSSSHTICNLNWTLSHTFFPFDPYLLRRSFKFIGP--LYLYWKHADPT--------------SQENATNLEHTKRIIEEFEDESNGDGETTDGEIDVSSVESEDECDDKDHELSMEIQE 670
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1173942765|gb|OQR91711.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Achlya hypogyna]) HSP 1 Score: 157.147 bits (396), Expect = 2.252e-36 Identity = 162/658 (24.62%), Postives = 259/658 (39.36%), Query Frame = 0
Query: 32 ARNHNRSLDDMET------LPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNG-NRMAAEGS------------GNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRR--TMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCL--ESVKREFLRLARLHGLVP---------W----GALGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
A N+N L E +FLAL I+ +TA+ DA++EL +F +D+ D+Y+ LL HLV+A++ FV P ++ML R+ P P T+ G R+ G+ +V L + R VH + VL LVPA ++ L AFPH+R T+ +N + +L T AKG L +++L LI+E+ + +DVEIK++++ E+ + +D + + +D E +VDE AD LD +ML +F + D+ ++ D A + LF L D S+L TH+ KY QF FY+A + L + +L++ +++ P VTR + +YL+S++ R++ + + I L LL RW+ + P + A D + Q Y+V F G ++ G A LG Q R+ PL P + SV EF+ +A L L+P W + G E + E N +FPFDP+LLRRS ++ +Y +W+
Sbjct: 30 ATNYNLILSKFEKSASDKDRSQLFLALPRSISKLTASMDAYRELIHHIFMFDFMASPVVTDSYTRLLTHLVTAQTAFVQPAIKMLVRNFVRPEPPAIATSVKGIPRITTLGTQIRHVEATVPAVSSVDILAQFEEAVVRRYENVHAAFAKVLELVPAAIHMVFECLCSAFPHKRRETLSQLAYLNNILKL----------TTYAKG-------------------LQERVLGLIVEKLVAIDVEIKLDNT----------------------------------EEDVFTMD--------DFLDDDCCADPEA----DMVDENADKLDHMMLAVFTYFDQLLAADPSAHATLFTYLLKSFDQSVLNTHQSKYPQFLLFYMAKTATEHQ--ELFLSQLISVSLDPKIPP-VTRRSCASYLASYVARAKYVSLMAIKHTLFHLL----------------------------------------RWI-HSQVDLLDNLPVDGIAAAACDPLTA---DVIQTACYIVCF-----RGLELCGSEAGYGFVRSLGWQ------RILMCPLMPFRQPVFQPSVANEFVNVAELLLLLPDECIEELLQWISTSTTVKSASHGMNLERSIVEKNTTNQACFFPFDPYLLRRSFKYIG--PLYLFWK 552
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1210512524|dbj|GAX28381.1| (RNA polymerase I-specific transcription initiation factor RRN3 [Fistulifera solaris]) HSP 1 Score: 157.147 bits (396), Expect = 5.248e-36 Identity = 188/708 (26.55%), Postives = 282/708 (39.83%), Query Frame = 0
Query: 86 DAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLA---ARDLSGRVPVLLVDRLLA-RAVEEDDAP---MVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYV--------VAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEG-------------------------------NHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ---AKAVSDVIEKEKSAWVRVKEEEPAEGVDGAKGVAREIKDEPCSDESGSEGEG---RLYEEGDEESEGSGWEEAQEEEEVEEEERVSWRQAS 741
DA+ LL LVSA ST + P + L + L Q+D +K R VH +L T++ + P G E++P++ P R+ Y L VL EY E +L+AL+++RCLE+DVEIKI D GEVS+D+ +HDP + LD+ EV+ ED VDEMAD LDS+M +LF++++ D A +F L + SIL TH+ K+VQF +L +R + L+ R A + +E P + R A YL+SF+ R+ + E I A++ALL AEA++A + A Y D Q + FY++CQ+ FY+ + FH ++ D E + + + R RL PL+PL +CLESV+ EFL +++ L+ L L EE+ L +E NPL+S+FPFDP+LL RSS V Y +W+ +VSD E++A ++++E E D + A D+ +D S E EG R +E +S S E V +E + ++AS
Sbjct: 162 DAHFNLLVVLVSANSTLLVPTISALWKLLIT----QEDASKE------------------------RWYRVHAALATIMFMCPTGKMEMFPIVSSNTPFRKKEESSLRWYYKNCLDVL--EYIASME-------------------------GELIALMIDRCLEMDVEIKINDGGEVSIDRD----------SHDPG--------------IFQLDLEEK--AKEVLPEDAT-----------VDEMADRLDSIMKILFEYIESRCEQDLSNAYNIFSILLRSFEKSILITHKSKFVQFLILHLCGLESRQMEHDAEASLLYREYASKLIEIILDPYRAIAIRQCAACYLASFVSRATYVCAETICEAVSALLRWAEAYVATL----------------------------------QSSAVYAV------DIRNQCSLHSL-FYTVCQSSFYIMCFRGVDAIEFHRNAISSSDSAYY---EPSRIDISAE---RWTRLCEHPLQPLRYCLESVRSEFLLISKNFDLISEQVLSQLVA--EEKRLASEAGKQRKKRRSTISTPATLEKERQTGGVGGMGHGMNPLDSFFPFDPYLLHRSSKHVE--PFYGHWEEPLPSSVSDDDNNEENA--DLEQDEILEEDDSSDTDAESEGDDSDND-SLREHEGGDDRSFEPMSYDSNASDISNKSAESSVFKEPSIDDKRAS 723
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|813118833|ref|XP_012196076.1| (hypothetical protein SPRG_02135 [Saprolegnia parasitica CBS 223.65] >gi|641539518|gb|KDO33327.1| hypothetical protein SPRG_02135 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 154.836 bits (390), Expect = 1.769e-35 Identity = 167/658 (25.38%), Postives = 260/658 (39.51%), Query Frame = 0
Query: 32 ARNHN-------RSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSG--------------NVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCL--ESVKREFLRLARLHGLVPWGALGGL-------------GGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
A N+N +S DD E +FLAL I+ +TAN DAF +L +F +D+ +AY LL HLV+A++ FV P +++L R+ P P G G V L + AR VHE+ VLALVPA ++ + FPH+R V + QL L +T AKG L +++L L++E+ + +DVEIK++++ E D +++D C+D +VDE AD LD++ML +F H ++ ++ D + LF L D S+L TH+ KY QF FY+A + L + +L++ +++ P VTR + +YL+S++ R++ LP I L LL RW+ + G P DA A P+ ++ Q Y+V F G ++ G A LG Q R+ PL P + SV EF+ +A L L+P ++ L G E + E + + +FP+DP+LLRRS F+ +Y +W+
Sbjct: 39 ATNYNLILSKFEKSTDDKER-SQLFLALPRSISKLTANMDAFHDLVHQIFTFDFMASPIVIEAYIRLLTHLVTAQTAFVQPTIKVLVRNFLRPTPPTIAAPMKGATRIMTTLGIAIRPVIATAPVVPAVDVLAQFEEQVVARYKYVHEAFAKVLALVPASIHMVFECICGLFPHKR-------VETLSQLAFLK-NVLHLTTYAKG-------------------LQERVLGLLVEKLVAIDVEIKLDNTEEDVFTMDD-----------------------FLDDDC-CVD----------------------PTSDMVDENADKLDNMMLTVFTHFEQLLATDPTVHTALFTFLLKSFDASVLNTHQSKYPQFLLFYIAKT--APEHQELFLSQLISVSLDTKIPP-VTRHSCASYLASYVARAKYLPTTAIKHTLFHLL----------------------------------------RWIHGQVDLLDGLAP---DAIASAACDPL-TTAVIQTACYIVCF-----RGLELCGSEAGYGFVRSLGWQ------RILTCPLMPFRQPVFQPSVANEFVNVAELLLLIPDESVEQLLLWISTSTASKSSSHGMNLERSIVEKDTSKRACFFPYDPYLLRRSFRFIG--PLYLFWK 562
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|698775782|ref|XP_009820935.1| (hypothetical protein H257_00104 [Aphanomyces astaci] >gi|574123060|gb|ETV88535.1| hypothetical protein H257_00104 [Aphanomyces astaci]) HSP 1 Score: 152.14 bits (383), Expect = 1.278e-34 Identity = 176/649 (27.12%), Postives = 266/649 (40.99%), Query Frame = 0
Query: 27 YSIPFARNHNRSLDDMETLPHVFLALSTCITTITANPDAFKELFSALFQYDWSGGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSL-----AAP---GPLQDDTAKNGNRMAAEGSGNVQG-------LIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLE--SVKREFLRLARLHGLVPWGALGGLGGGEEEEELV-----TEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
Y++ ++ N S D E ++L L CI+T+T + DA+ EL ++ +D+ DAY L+ HLV+A ++F+ P + ML R+L AP PL R + G V + R A+VH + VL LVPA ++ L + +PH+R P ++Y+ L L T AKG L +++L L++E+ + +DVEIK+E A E V D +++D T C+D E+ G VDEMAD LD +ML F +L+ A S RLF L D SIL THR KY QF FY+ + LL+ +L++ A++ P VTRL+ +YL+S++ R++ L + I L +M Y+ H + D + A ++ P D D L Q+ Y+V F G ++ G A T LG R+ S L P+ H +V EF+ +A L GLV A+ GL G ++ + +FPFDP+LLRRS F+ +Y YW+
Sbjct: 49 YNVLVSKLENTSED--EERRQLYLVLPRCISTLTKDLDAYHELVHRIYTFDFLTTMPIIDAYIRLITHLVTAHTSFLQPTIHMLVRNLLRVPRPAPLSVSPLAVQIKSTLTRRVSIGIPTVNSGPSEAELAAQFEASLQQRFASVHAAFEKVLHLVPASIHHVFQCLCEYYPHKRLETPIQ-LSYLTNLFQLTTY-------AKG-------------------LQERVLGLVVEKLVAIDVEIKLE------------ATEEDVFTMDD-----------FLDDAT-CVD-----------PENLKG----------VDEMADKLDHLMLATFTYLEAAAS----DHPRLFAFLLKSFDQSILNTHRSKYPQFLLFYICKSPSEHQ--ELLLSQLISVALDA-KVPPVTRLSCSSYLASYVARAKYLGLNAIKHTLF---------------HIMRYI-HGQVDVLDEAA--AAII------------------PPSSIVDKCLVD-------LVQSACYIVCF-----RGLELCGSEAGYTFVRSLGWT------RVLTSRLHPMRHAAFHGAVAAEFMNVAELLGLVSDEAIEGLWEGMKQAPSAKTLERSSSAATASMCFFPFDPYLLRRSFRFIG--PLYLYWK 560
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|953497313|emb|CEG41622.1| (rna polymerase i-specific transcription initiation factor rrn3 [Plasmopara halstedii]) HSP 1 Score: 152.14 bits (383), Expect = 3.204e-34 Identity = 182/704 (25.85%), Postives = 286/704 (40.62%), Query Frame = 0
Query: 48 VFLALSTCITTITANPDAFKELFSALFQYDWSGG---CRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAP----------GPLQDDTAKN------GNRMAAEGSGNVQGLIDLGDTN--------NARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGVVNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIKIEDSGE----------VSVDQADNAA-EAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVV--KKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLG--RLACSP--LRPLDHCLESVKREFLRLARLHGLVPWGAL----GGLGGGEEEEELVTE-------------------GNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ-----AKAVSDVIEKEKSAWVRVKEEEPAEG 679
+F AL CI+T+ A++ L LF++D C D Y+ + HLVS+ + +V P L ML R++ P D AK+ GN + E S + G I+ DT AR A H++L+ VL LVP + L+P+L + FPH+R M V Y+R +L VTE G L +++L L+L++ + +DVEIK+++S E + +DN + A LV+ +H+ E A E+ADT +L + + + + + A+ +F+ L V + SIL THR KY QF FY+ D + + + +LLA +++ P TR + AYL+SFL R++ + V + +AL LL + D M D A ++D G K EER L E E E + +F SL Q + Y++ F L + ++ GA G + LG RL + PL +C ++V EFL L LV L +G L + G PL ++FPFDP+LLRRS ++ +Y +W+ + D++ K+ +++E EG
Sbjct: 96 IFRALPRCISTMAREHHAYRALLDVLFKFDLLASGDPCEVED-YTNFIVHLVSSNTIYVVPTLHMLVRNMRRPQMKELPFDLRAQFDADQAKDEAIQRAGNIVIGE-SFSTNGSIEAHDTGELSLEERIQARFEAAHQTLKRVLVLVPTATNVLFPILCEHFPHKR-MDASTQVAYLRNVL-------RVTEYVGG-------------------LRERVLGLVLDQLVAIDVEIKLDESEEDVFTMDDFLDDDLLPSDNTSGRMDEMADKLDKMMLVMFQHI----------------------EQCATSSPSTS------ELADT-----VLPIEESNTYNNLNMRQATLIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMD--PQFQDVFISQLLATSLDPQTPP-TTRHSCGAYLASFLARAKYISVAYLQKALYHLL--------KWLHDQMDLYDAAHEDQQDKVERYVGTTTPKNEERVLEESEK--------LEIKSVRGFQESIFISSL-QTVCYMLCFRG--------LEIATSDDGA---GYEFLRSLGWERLLITNTGYCPLAYCQQTVATEFLNLVETFDLVSEECLERVDQAIGTATVPANLAAKSMEHSKKPTVGSASASTLIGQRQPLETFFPFDPYLLRRSFRYIG--PLYLFWKHADPTSSENCDLLNSVKATIRQMQETAEDEG 704
BLAST of EWM25090.1 vs. NCBI_GenBank
Match: gi|1176123138|ref|XP_020632915.1| (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Orbicella faveolata]) HSP 1 Score: 134.806 bits (338), Expect = 3.537e-29 Identity = 156/636 (24.53%), Postives = 254/636 (39.94%), Query Frame = 0
Query: 45 LPHVFLALSTCITTITANPDAFKELFSALFQYDWS-GGCRARDAYSCLLAHLVSAKSTFVHPVLQMLARSLAAPGPLQDDTAKNGNRMAAEGSGNVQGLIDLGDTNNARKAAVHESLRTVLALVPAGFSELYPVLGQAFPHRRTMGPGGV-VNYVRQLLVLATEYATVTEPAKGTSSGSTPSVQSKQRGSGTALGDKLLALILERCLELDVEIK----------IED---SGEVSVDQADNAAEAGVHAAHDPSAALVLSEHMYVEDPTYCLDIHHPMPGPEVVGEDGAGGGEGGGQEGVVDEMADTLDSVMLLLFQHLDKAISCDGQ----AASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAARDLSGRVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALTALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTEEDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSRLGRLACSPLRPLDHCLESVKREFLRLARLHGLVPWGA--------LGGLGGGEEEEELVTEGNHNPLNSYFPFDPFLLRRSSGFVARPNVYRYWQ 653
L +AL++C ++T D L W+ G + + + L LVSA++ ++ L+M+ + L PG +D K G+ A DL HE+L+ VL +VPA L PVL + FP+ + P +YV+ LL + T+Y P ++SK +L L++ + +DVEI IE+ EV +D+A+ A EA A HD C++ +EMAD LD +M +LF+++ + +G+ A + LF L V + IL TH +VQ+ F + + DL +L V + +E+ + P + R A AY++SF+ R++ +P+ + L DL+ + H ++ D G LG + + YG FYS+CQA+FY+ F H + +L + RL L R+ + PL CL +V + F + R H LV + + ++ N L+S+FPFDP+LLRRSS F+ + Y+ W+
Sbjct: 54 LQRYLMALTSCSASLTKQYDT---LVGTALNTRWAVCGDKTVEEFIEFLTSLVSAQTYYLRACLRMIVK-LFLPGVSKDGHLKTGDSEA-----------DLDKV----FCHAHEALQAVLEVVPAVPQFLIPVLSENFPYMK--KPTIFQASYVKNLLQI-TKY--------------LPDLRSK-----------ILELVIHNLITIDVEIPKHELEHNEAAIEEDHTQFEVDMDEANIAVEAS--ANHDEEI---------------CME----------------------------NEMADKLDILMEILFKYIHEVTHINGEHSVDAGTELFNELLLVFENVILPTHASCHVQYVMFQVCSFDLDFANSLLDV---CWKKIEDPNTPSILRQACAAYIASFIARAKYIPISTVQTCL----------------DLVAHWIHCYIDMNDAGC------------LGPDVSRYGP------------------FYSVCQALFYMFIFRH-----KQLLDLEEGLKYLRRLN------LDRIVTCRMNPLKVCLPTVVKMFAHITRQHELVFCYTIIEQNNRMMLPVATPTSSRAVLNLSFMNQLDSFFPFDPYLLRRSSKFIK--SCYQEWE 535 The following BLAST results are available for this feature:
BLAST of EWM25090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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