rna5600, rna5600 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5600
Unique Name	rna5600
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1293
Alignment location	CM002466.1:377651..379460 -

Link to JBrowse

Properties


Property Name	Value
Product	wd repeat-containing protein 74
Orig transcript id	gnl\|cribi\|Naga_100016g4.2926.mrna
Orig protein id	gnl\|cribi\|Naga_100016g4.2926
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:377651..379460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g4	gene5412	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5600	rna5600-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25117.1	cds5586	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:377651..379460-
coding sequence from alignment at CM002466.1:377651..379460-

mRNA sequence

>rna5600 ID=rna5600|Name=rna5600|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp
ATGACACAAGAGTCCTCTCCCCATTCCGCCTCGGCTCCATCGACATTTAG
TTCACCATCATTAAGCACCGCTACAACCGAATCTGTCGGAGGTCGTCGGC
GGAGTCGAGATTTAATGATTGATGAGGATACTCCAATGAGCAGCTCGGCA
TCGGCGCCTTCATTGCCTCCGGCAAATTCTTCACTTTCGCCCCACCATTC
GTCGGAGCAACAACACCAGCAGCCGTCGATGGTACGACGATCTTCTGGCA
GCTCGTATTCAAAAAGAGAGTCGTTCGTGCGCACTCCCGAAGACTCCTTC
CGAGACGAGATAGTTCGGCAAATTTTTGGAGAGAACTTAGGTTGCATTCG
AGATGACGCATCCTGCGCTGTGGAAAGCAAAATTTTGTTACACGGACGTA
TATATATCACTGATAAATTCGTATGTTTTTACAGCAATTTCTTTGGCTTC
GAAAAGAAAATCAAGATTCCCTTCTCCCAAGTACGGACGCTGAGCAAAGG
CAACACGGCCTTGCTGATCCCGAACTGCATAATCATTCAGACCCACGGCA
AAGAGTACTGCTTCCGGTCGTTCTGGGACCGCGACGAGTGTTTCTGGCAG
ATGGCCCGGTGCTTCCGAGCATACCACCGCATGCAATCGGTCCCGCGTGA
GGCCGTCATGGAGTGTCGCTCTCTCGACAGAACGGGCAGGATTGAGAATA
GTACCGCCACTGTGGTGGAGGACGGGGGCGGGCCCATGGCGGGCACCGGG
CGCCCCCAAACCGCGTCGTCTATGTCTGCTTCCTACAGCCAGCAGCAGCC
CCAGCAGTTTCGACGGCAGCAGTCGGGTCATCGCAAAGGGCCCCAGAAAC
AGGAGGAGCATCGGGAGGCCGGGGCGGAGGACAGACGCGGTTCCCACCCG
CCCCTGCCCCCGGAACCGCGGTCGCAAGGGCCCTCGCAGCAACCCTCGGT
CTCCACCCACGGAGAAGGAGGCACAGGACCGCCATATGGGATCTCAGGGG
AGCCGGTGGGTGGAGAGTTTCTCCCGGCACGGGCGCCATCGGATGAGACA
GGCGGGTTCCCGCAGCACCCTGACACACCGGGGCCTGGTCCCACTCTTGC
CGCCCCCTCGTCTCCCGACCTTTCTCTCCCGCCACCCTTAGACGTCCACC
CTGTCGACGCCTATGAAGAGGCCGGCGAGGGGGAGCGGCGAGACGTGTCT
CGAGGGGCGACTTCGCCCTCTCCCCTCGCGCCGGGGGGGGGGTCTCGTTG
GGTTCCGGCGAGGACGACGGCATGTGGGATCTGGACGAGCTAA

protein sequence of rna5600

>rna5600-protein ID=rna5600-protein|Name=rna5600|organism=Nannochloropsis gaditana|type=polypeptide|length=526bp
MRIITGDEGGLLKSIDLEGQRIVVAGRQERARGIRALCWSRGGAMYAAAR
HDGVVTLWEDNPTVPRLARECKGAVNEDVIGMASTDAHLARKEEEERLVV
AHENGKIKVLAPWQSVVTGHKGICIDEWQVKGPLTCMACNFGSTNVVAAG
GKERELGLYDVSTGAPVWEARNVAHDKLSLRQPVWVTAIHFLDVETGSEG
GGAGRLVAIGTGYKQVRIYDVRAPDRRPVRAMELPEGYRITALASGGVQG
ATGAGSELVSGDAGGTVYRLDVGKMALLGRMEGPAGSVRGLARHPNPALP
FVALAGLDRMARVYDLRRPRKEAFRFYLKQRLTAVLFAKQGRKGSKGIAE
EIDEEVRAAKATGSNGWREMEDDVLSLDDEEEEEGEGGDYDGEEEEKAEA
LRRGRYSDTPERKENGFKIQRVYESEEEVDDGGGMGEDTSDGGDQDEEEE
EEDEEEDEEGGEEDDEDKVAFGRRNDGPIHLELNIVGGGDEEDEDRSAEQ
VSNRVREKGIDKHQRQKLGPTKRPRR

mRNA from alignment at CM002466.1:377651..379460-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5600 ID=rna5600|Name=rna5600|organism=Nannochloropsis gaditana|type=mRNA|length=1810bp|location=Sequence derived from alignment at CM002466.1:377651..379460- (Nannochloropsis gaditana)
TGTCCGCGACAGACGTTGTGTTTTCAGGAAATTGACTTGGCATTTCTCAT
TTATCCCAGGGATGCGCATCATCACGGGGGATGAGGGAGGGTTGCTCAAA
TCAATCGACCTCGAGGGTCAACGCATCGTCGTGGCTGGCCGCCAGGAACG
AGCGCGCGGCATCCGCGCGCTTTGCTGGTCGAGAGGAGGAGCTATGTATG
CCGCTGCTCGGCATGACGGTGTCGTCACTTTATGGGAAGACAACCCCACG
GTGTGTGGGTGGCCGCATATTGGTTGGGTGCTGGTTAAGAGATGGATGCA
ATGTCGTGTTGAACCATTCCTTTTCATCAAAACTTAACCCGACCGGCGCT
GTAATAGTAATTTTGTTTCTTGCCATACTGCAGGTACCAAGACTGGCGAG
AGAATGCAAAGGCGCCGTGAACGAGGACGTAATAGGGATGGCTTCCACGG
ACGCTCATCTCGCACGAAAGGAGGAGGAGGAACGGCTTGTAGTGGCGCAT
GAGAATGGGAAGATAAAGGTTTTGGCCCCGTGGCAGTCTGTAGTCACCGG
ACACAAGGGTATTTGCATTGACGAGTGGCAAGTGAAAGGACCGCTTACAT
GCATGGCCTGTAATTTTGGGTCTACCAATGTGGTTGCGGCGGGCGGAAAG
GAGAGGGAGCTGGGACTTTACGACGTAAGCACCGGTGCACCGGTCTGGGA
GGCCAGGAACGTGGCCCATGACAAGCTCAGTCTCAGACAGCCCGTGTGGG
TCACGGCCATCCATTTCCTGGATGTCGAGACAGGGAGCGAGGGTGGGGGC
GCGGGCCGTCTGGTGGCCATCGGGACGGGCTACAAGCAGGTTCGCATCTA
CGACGTCCGCGCGCCGGATCGGCGGCCTGTGCGCGCCATGGAACTTCCTG
AGGGGTATCGCATTACCGCCTTGGCCAGCGGGGGCGTGCAGGGGGCGACA
GGAGCGGGCTCAGAGCTTGTGAGCGGGGACGCGGGAGGCACCGTGTATCG
ACTCGACGTGGGCAAGATGGCGCTATTGGGCCGCATGGAGGGCCCAGCGG
GCTCAGTCCGGGGCCTCGCAAGACACCCTAATCCTGCGCTGCCTTTTGTG
GCCCTTGCAGGTCTGGACCGCATGGCGCGTGTGTACGACCTCCGGCGACC
GAGAAAGGAGGCCTTTCGCTTCTATCTTAAGCAGCGACTCACGGCGGTTT
TGTTCGCGAAACAGGGCCGAAAGGGCTCGAAGGGTATAGCAGAGGAGATA
GATGAGGAAGTTCGAGCAGCAAAGGCAACAGGATCGAATGGCTGGAGGGA
AATGGAGGATGATGTGTTAAGTTTGGATGACGAGGAAGAGGAGGAGGGAG
AGGGAGGCGATTACGACGGTGAAGAGGAGGAAAAAGCTGAAGCATTGCGC
AGAGGCAGATACAGTGATACACCTGAGAGGAAGGAGAACGGCTTTAAGAT
CCAGCGAGTTTACGAGAGCGAGGAGGAGGTGGACGATGGGGGGGGGATGG
GGGAGGACACGAGCGACGGTGGGGACCAGGATGAGGAGGAGGAGGAGGAG
GATGAGGAGGAAGATGAGGAGGGCGGAGAGGAGGATGACGAGGATAAAGT
GGCATTTGGGCGTCGCAATGACGGTCCCATACACTTAGAATTGAACATAG
TCGGTGGAGGTGACGAAGAGGACGAGGACAGGAGTGCCGAACAAGTGAGT
AATCGGGTCCGTGAAAAGGGTATTGATAAACACCAGAGACAAAAATTGGG
GCCTACAAAACGGCCACGAAGATGATGTATGTAAATGAAACGGAACACTA
CTTCAAGATA

Coding sequence (CDS) from alignment at CM002466.1:377651..379460-

>rna5600 ID=rna5600|Name=rna5600|organism=Nannochloropsis gaditana|type=CDS|length=3162bp|location=Sequence derived from alignment at CM002466.1:377651..379460- (Nannochloropsis gaditana)
GTACCAAGACTGGCGAGAGAATGCAAAGGCGCCGTGAACGAGGACGTAAT
AGGGATGGCTTCCACGGACGCTCATCTCGCACGAAAGGAGGAGGAGGAAC
GGCTTGTAGTGGCGCATGAGAATGGGAAGATAAAGGTTTTGGCCCCGTGG
CAGTCTGTAGTCACCGGACACAAGGGTATTTGCATTGACGAGTGGCAAGT
GAAAGGACCGCTTACATGCATGGCCTGTAATTTTGGGTCTACCAATGTGG
TTGCGGCGGGCGGAAAGGAGAGGGAGCTGGGACTTTACGACGTAAGCACC
GGTGCACCGGTCTGGGAGGCCAGGAACGTGGCCCATGACAAGCTCAGTCT
CAGACAGCCCGTGTGGGTCACGGCCATCCATTTCCTGGATGTCGAGACAG
GGAGCGAGGGTGGGGGCGCGGGCCGTCTGGTGGCCATCGGGACGGGCTAC
AAGCAGGTTCGCATCTACGACGTCCGCGCGCCGGATCGGCGGCCTGTGCG
CGCCATGGAACTTCCTGAGGGGTATCGCATTACCGCCTTGGCCAGCGGGG
GCGTGCAGGGGGCGACAGGAGCGGGCTCAGAGCTTGTGAGCGGGGACGCG
GGAGGCACCGTGTATCGACTCGACGTGGGCAAGATGGCGCTATTGGGCCG
CATGGAGGGCCCAGCGGGCTCAGTCCGGGGCCTCGCAAGACACCCTAATC
CTGCGCTGCCTTTTGTGGCCCTTGCAGGTCTGGACCGCATGGCGCGTGTG
TACGACCTCCGGCGACCGAGAAAGGAGGCCTTTCGCTTCTATCTTAAGCA
GCGACTCACGGCGGTTTTGTTCGCGAAACAGGGCCGAAAGGGCTCGAAGG
GTATAGCAGAGGAGATAGATGAGGAAGTTCGAGCAGCAAAGGCAACAGGA
TCGAATGGCTGGAGGGAAATGGAGGATGATGTGTTAAGTTTGGATGACGA
GGAAGAGGAGGAGGGAGAGGGAGGCGATTACGACGGTGAAGAGGAGGAAA
AAGCTGAAGCATTGCGCAGAGGCAGATACAGTGATACACCTGAGAGGAAG
GAGAACGGCTTTAAGATCCAGCGAGTTTACGAGAGCGAGGAGGAGGTGGA
CGATGGGGGGGGGATGGGGGAGGACACGAGCGACGGTGGGGACCAGGATG
AGGAGGAGGAGGAGGAGGATGAGGAGGAAGATGAGGAGGGCGGAGAGGAG
GATGACGAGGATAAAGTGGCATTTGGGCGTCGCAATGACGGTCCCATACA
CTTAGAATTGAACATAGTCGGTGGAGGTGACGAAGAGGACGAGGACAGGA
GTGCCGAACAAGTGAGTAATCGGGTCCGTGAAAAGGGTATTGATAAACAC
CAGAGACAAAAATTGGGGCCTACAAAACGGCCACGAAGATGAATGCGCAT
CATCACGGGGGATGAGGGAGGGTTGCTCAAATCAATCGACCTCGAGGGTC
AACGCATCGTCGTGGCTGGCCGCCAGGAACGAGCGCGCGGCATCCGCGCG
CTTTGCTGGTCGAGAGGAGGAGCTATGTATGCCGCTGCTCGGCATGACGG
TGTCGTCACTTTATGGGAAGACAACCCCACGGTACCAAGACTGGCGAGAG
AATGCAAAGGCGCCGTGAACGAGGACGTAATAGGGATGGCTTCCACGGAC
GCTCATCTCGCACGAAAGGAGGAGGAGGAACGGCTTGTAGTGGCGCATGA
GAATGGGAAGATAAAGGTTTTGGCCCCGTGGCAGTCTGTAGTCACCGGAC
ACAAGGGTATTTGCATTGACGAGTGGCAAGTGAAAGGACCGCTTACATGC
ATGGCCTGTAATTTTGGGTCTACCAATGTGGTTGCGGCGGGCGGAAAGGA
GAGGGAGCTGGGACTTTACGACGTAAGCACCGGTGCACCGGTCTGGGAGG
CCAGGAACGTGGCCCATGACAAGCTCAGTCTCAGACAGCCCGTGTGGGTC
ACGGCCATCCATTTCCTGGATGTCGAGACAGGGAGCGAGGGTGGGGGCGC
GGGCCGTCTGGTGGCCATCGGGACGGGCTACAAGCAGGTTCGCATCTACG
ACGTCCGCGCGCCGGATCGGCGGCCTGTGCGCGCCATGGAACTTCCTGAG
GGGTATCGCATTACCGCCTTGGCCAGCGGGGGCGTGCAGGGGGCGACAGG
AGCGGGCTCAGAGCTTGTGAGCGGGGACGCGGGAGGCACCGTGTATCGAC
TCGACGTGGGCAAGATGGCGCTATTGGGCCGCATGGAGGGCCCAGCGGGC
TCAGTCCGGGGCCTCGCAAGACACCCTAATCCTGCGCTGCCTTTTGTGGC
CCTTGCAGGTCTGGACCGCATGGCGCGTGTGTACGACCTCCGGCGACCGA
GAAAGGAGGCCTTTCGCTTCTATCTTAAGCAGCGACTCACGGCGGTTTTG
TTCGCGAAACAGGGCCGAAAGGGCTCGAAGGGTATAGCAGAGGAGATAGA
TGAGGAAGTTCGAGCAGCAAAGGCAACAGGATCGAATGGCTGGAGGGAAA
TGGAGGATGATGTGTTAAGTTTGGATGACGAGGAAGAGGAGGAGGGAGAG
GGAGGCGATTACGACGGTGAAGAGGAGGAAAAAGCTGAAGCATTGCGCAG
AGGCAGATACAGTGATACACCTGAGAGGAAGGAGAACGGCTTTAAGATCC
AGCGAGTTTACGAGAGCGAGGAGGAGGTGGACGATGGGGGGGGGATGGGG
GAGGACACGAGCGACGGTGGGGACCAGGATGAGGAGGAGGAGGAGGAGGA
TGAGGAGGAAGATGAGGAGGGCGGAGAGGAGGATGACGAGGATAAAGTGG
CATTTGGGCGTCGCAATGACGGTCCCATACACTTAGAATTGAACATAGTC
GGTGGAGGTGACGAAGAGGACGAGGACAGGAGTGCCGAACAAGTGAGTAA
TCGGGTCCGTGAAAAGGGTATTGATAAACACCAGAGACAAAAATTGGGGC
CTACAAAACGGCCACGAAGATGAATGCGCATCATCACGGGGGATGAGGGA
GGGTTGCTCAAATCAATCGACCTCGAGGGTCAACGCATCGTCGTGGCTGG
CCGCCAGGAACGAGCGCGCGGCATCCGCGCGCTTTGCTGGTCGAGAGGAG
GAGCTATGTATGCCGCTGCTCGGCATGACGGTGTCGTCACTTTATGGGAA
GACAACCCCACG

Synonyms

Publications