rna560, rna560 (mRNA) Nannochloropsis gaditana

Overview
Namerna560
Unique Namerna560
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length270
Alignment locationCM002455.1:1386197..1387682 -

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Properties
Property NameValue
Productfad synthase
Orig transcript idgnl|cribi|Naga_100878g1.370.mrna
Orig protein idgnl|cribi|Naga_100878g1.370
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1386197..1387682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100878g1gene539Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30113.1cds560Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna560rna560-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna560 ID=rna560|Name=rna560|organism=Nannochloropsis gaditana|type=mRNA|length=270bp
ATGGTTTCCAGCGCATCAAGACACGAGTCCTTCCTCTGGGCCTCGTGCTA
CATGGGCTTGCCGGCCGCAAACGGCTTCCAATGTCATGAAGAAGCGCATG
CTTACCGACTGCGAGATAGCCTCGAGACGCGGTTACTGGCCCTAGCTTCA
CGACTCGATCCTTCATTGAAGACACGCAAAGAGCCAGGACGACCTGCCTG
TTGTGCTCACTTGGGTCCCACCCACTCAGGACACGCGTCGAAGTCAGCAG
AGAGGAGGCCCCTGGATTAG
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protein sequence of rna560

>rna560-protein ID=rna560-protein|Name=rna560|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MLDRSIVESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRL
YDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANRRVADRKE
DAMEEEKGRDADGQVDDVRVKRREAGWEGALSSPSLVMREEEPTGRGRKD
EVGKTLEEEEELLQRHEDTRNKHPYPTGQHTHQSQGTLRARSF
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mRNA from alignment at CM002455.1:1386197..1387682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna560 ID=rna560|Name=rna560|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp|location=Sequence derived from alignment at CM002455.1:1386197..1387682- (Nannochloropsis gaditana)
ATGCTCGACCGCTCGATAGTGGAAAGCGAGCACCTGGAACCTTCGTCACC
CGGTTGGCCCGTTTTTCTCCGAGTCAACCCCCTTCTCACGTGGGATTACG
GACAGATCTGGGACTTTTTACGTCGATTTTCCCTCCCGTACTGCCGATTG
TACGACGAGGGATACACCTCCCTGGGGGACACGCGGACCACCGTCCGCAA
TCCGGCGTTACGCAGATTGGAGGGGGGATACCGGCCCGCGTACGCCTTGG
AAAACTGGACATTGGAACGGGCGAACCGACGGGTGGCAGACAGGAAGGAG
GACGCGATGGAGGAAGAGAAGGGGCGTGACGCAGACGGTCAGGTGGATGA
CGTGCGGGTAAAGAGGCGGGAGGCAGGGTGGGAGGGAGCCTTGTCAAGCC
CGTCCCTTGTAATGAGGGAGGAAGAACCCACGGGAAGAGGGAGGAAGGAC
GAGGTAGGGAAAACGCTGGAGGAGGAGGAGGAGCTCTTGCAGCGGCACGA
GGACACTAGGAACAAACATCCTTACCCGACAGGCCAGCATACTCACCAGA
GCCAAGGCACCCTCCGTGCACGCAGTTTCTGAACGTGCGCTTGCCGTGTG
ATGAGGAGCTTGCCTCGGATAGGGTCGTCCCTTTTCCTTCCCCCCCGCCC
CTTCGGTCCTCTTTTGTCCCTCTCCGTGCTCTCCTCGAATTCTTCTGCCA
TCATCTCTTGGCCGTCGGTTGGATGCAAACGTTTACATTCCTACAATTGT
TTTCTCAATCAGGCACGATCCAAGCCTGTGTTCGACAGCTGTCATCCTTT
GCCGGCATGGCCCGAGAACCGCCCTGCAGCAAGAGCGATAATGTTGGACA
GGGCAGCAAGCAGAGCATTGAAAAAGCCGAGGATCGCCGAGGCTTTCGCG
CGGCCGTTCACGCCTGGGCCGAGGAAGAGACGCGGGTCGACAAGCAAGAA
TGACCCGATGTGAGCATGTTGGAAGTTAGAGGTGAGGCATGCGCCCGATA
CAGAAATTGGAAGGGGAGAGACATGGGCATTTTTCCGCGAATAAATCGGA
ATTTTCTGGCATGGTGGGCGGTGCCATCTCTCCAGTCTGGGCGCGTGTAA
ATCCAAGGGAGATGGCGTCATTACCTTGACCTTCCTCGACGTGGTTCGCT
TTCTCATTTACCTTCCGCGCGGGCACGTATGTGTACTACTTTCACGCAGT
TTCTGTGGGAGCTGCCACAGAGCAGAATATAAGGCCATCCTCGATAGCAG
TTGTACTTTTTCTTCTGGATCAGTCTTGTAAAATTTGGCCTGTCATATAC
TTCCTCTGTAAATCGCGCCCTGTGAAGTATCCATATCTGCATTTTGAACG
GCTTTAAATGAAAAAGTGTTATCATATCTAAAGTAACAGGCATCTGAGTT
GTATCGCAAAGTAATAGTACCTCACCGAACGCGAAAACCTCATTCTGTAC
TTCACTTTATTTTCCTTTTTTATACTTTACAAGTCA
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Coding sequence (CDS) from alignment at CM002455.1:1386197..1387682-

>rna560 ID=rna560|Name=rna560|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at CM002455.1:1386197..1387682- (Nannochloropsis gaditana)
ATGCTCGACCGCTCGATAGTGGAAAGCGAGCACCTGGAACCTTCGTCACC
CGGTTGGCCCGTTTTTCTCCGAGTCAACCCCCTTCTCACGTGGGATTACG
GACAGATCTGGGACTTTTTACGTCGATTTTCCCTCCCGTACTGCCGATTG
TACGACGAGGGATACACCTCCCTGGGGGACACGCGGACCACCGTCCGCAA
TCCGGCGTTACGCAGATTGGAGGGGGGATACCGGCCCGCGTACGCCTTGG
AAAACTGGACATTGGAACGGGCGAACCGACGGGTGGCAGACAGGAAGGAG
GACGCGATGGAGGAAGAGAAGGGGCGTGACGCAGACGGTCAGGTGGATGA
CGTGCGGGTAAAGAGGCGGGAGGCAGGGTGGGAGGGAGCCTTGTCAAGCC
CGTCCCTTGTAATGAGGGAGGAAGAACCCACGGGAAGAGGGAGGAAGGAC
GAGGTAGGGAAAACGCTGGAGGAGGAGGAGGAGCTCTTGCAGCGGCACGA
GGACACTAGGAACAAACATCCTTACCCGACAGGCCAGCATACTCACCAGA
GCCAAGGCACCCTCCGTGCACGCAGTTTCTGA
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Synonyms
Publications