EWM30113.1, cds560 (CDS) Nannochloropsis gaditana

Overview
NameEWM30113.1
Unique Namecds560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1387101..1387682 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30113.1
Productfad synthase
Orig transcript idgnl|cribi|Naga_100878g1.370.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1387101..1387682 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002500PAPS_reduct
IPR014729Rossmann-like_a/b/a_fold
Homology
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|585112759|gb|EWM30113.1| (fad synthase [Nannochloropsis gaditana])

HSP 1 Score: 394.045 bits (1011), Expect = 7.897e-139
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MLDRSIVESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANRRVADRKEDAMEEEKGRDADGQVDDVRVKRREAGWEGALSSPSLVMREEEPTGRGRKDEVGKTLEEEEELLQRHEDTRNKHPYPTGQHTHQSQGTLRARSF 193
            MLDRSIVESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANRRVADRKEDAMEEEKGRDADGQVDDVRVKRREAGWEGALSSPSLVMREEEPTGRGRKDEVGKTLEEEEELLQRHEDTRNKHPYPTGQHTHQSQGTLRARSF
Sbjct:    1 MLDRSIVESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANRRVADRKEDAMEEEKGRDADGQVDDVRVKRREAGWEGALSSPSLVMREEEPTGRGRKDEVGKTLEEEEELLQRHEDTRNKHPYPTGQHTHQSQGTLRARSF 193          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|676379227|ref|XP_009032892.1| (hypothetical protein AURANDRAFT_8492, partial [Aureococcus anophagefferens] >gi|323456381|gb|EGB12248.1| hypothetical protein AURANDRAFT_8492, partial [Aureococcus anophagefferens])

HSP 1 Score: 108.997 bits (271), Expect = 1.395e-27
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    3 DRSIVESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANR 93
            D +  + +  EPSS   P F+RVNP+L W YG +W FLR F LPYC LYD GYTSLG   TT RNPAL    G Y+PA+ LE+W+LERA R
Sbjct:   14 DPNCGDQKAFEPSSDWMPPFMRVNPILDWTYGDVWAFLRAFDLPYCALYDGGYTSLGSAPTTSRNPALLGDGGAYKPAHLLEDWSLERAGR 104          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|1040298153|gb|OBS83131.1| (hypothetical protein A6R68_22909 [Neotoma lepida])

HSP 1 Score: 112.849 bits (281), Expect = 9.469e-26
Identity = 53/87 (60.92%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   11 HLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGG----YRPAYALENWTLERANR 93
            H  P+ PGWP F+RVNPLL W Y  IWDFLR+  +PYC LYD GYTSLG    TVRNPAL+ L  G    YRPAY LEN   ER +R
Sbjct:  405 HFSPTDPGWPSFMRVNPLLDWSYRNIWDFLRQLFVPYCILYDRGYTSLGSQENTVRNPALKCLSPGGHPIYRPAYLLENEDEERNSR 491          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|93099905|gb|AAH09152.2| (Lenep protein, partial [Mus musculus])

HSP 1 Score: 104.76 bits (260), Expect = 1.863e-25
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   11 HLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGG----YRPAYALENWTLERANR 93
            H  P+ PGWP F+R+NPLL W Y  IW+FLR+  +PYC LYD GYTSLG    T +NPAL+ L  G    YRPAY LEN   ER +R
Sbjct:   52 HFSPTDPGWPSFMRINPLLDWTYRNIWEFLRQLFVPYCILYDRGYTSLGSRENTTQNPALKCLSPGGHPVYRPAYLLENEDEERNSR 138          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|1149850521|ref|XP_020140885.1| (FAD synthase isoform X3 [Microcebus murinus])

HSP 1 Score: 107.842 bits (268), Expect = 1.892e-25
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0
Query:   12 LEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGG----YRPAYALENWTLERANR 93
              P+ PGWP F+R+NPLL W Y  IWDFLR+  +PYC LYD GYTSLG    TVRNPAL+ L  G    YRPAY LEN   ER +R
Sbjct:  163 FSPTDPGWPSFMRINPLLDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSQENTVRNPALKCLSPGGRLTYRPAYLLENEDEERNSR 248          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|873231991|emb|CEM06680.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 112.464 bits (280), Expect = 2.126e-25
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0
Query:   12 LEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANR 93
             EPSS   P F+RVNP+L WDYG +W FLR   LPYCRLYDEGYTSLG    T +NPALR  +G Y+PAY L +W  ERA R
Sbjct:  307 FEPSSTWMPPFMRVNPILDWDYGSVWHFLRTHGLPYCRLYDEGYTSLGRKDNTWKNPALRNEDGSYQPAYLLADWAKERAGR 388          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|532048926|ref|XP_005367238.1| (PREDICTED: FAD synthase [Microtus ochrogaster] >gi|913514158|ref|XP_013209282.1| PREDICTED: FAD synthase [Microtus ochrogaster])

HSP 1 Score: 110.923 bits (276), Expect = 3.725e-25
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 0
Query:   11 HLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGG----YRPAYALENWTLERANR 93
            H  P+ PGWP F+R+NPLL W Y  IWDFLR+  +PYC LYD+GYTSLG    TV+NPAL+ L  G    YRPAY LEN   ER +R
Sbjct:  403 HFSPTDPGWPSFMRINPLLDWTYRDIWDFLRQLFVPYCVLYDQGYTSLGSRENTVQNPALKCLSPGGHPIYRPAYLLENEDEERDSR 489          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|1214703198|gb|OWZ15256.1| (FAD synthetase [Phytophthora megakarya])

HSP 1 Score: 108.227 bits (269), Expect = 4.229e-25
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0
Query:    8 ESEHLEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRR-----LEGGYRPAYALENWTLERANRR 94
            E EH  PSSPGWP FLRVNP+L W Y  +W FLR   L YC LYD GYTSLG+   TV+NP L R      EG Y PAY L++ T ER  R+
Sbjct:  189 EMEHFSPSSPGWPPFLRVNPVLQWTYADVWSFLRDCQLEYCSLYDHGYTSLGNIFDTVQNPELWRKGEDGKEGYYLPAYKLKDGTSERCGRQ 280          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|1189392867|gb|OSX79772.1| (hypothetical protein BU14_0071s0026 [Porphyra umbilicalis])

HSP 1 Score: 104.375 bits (259), Expect = 4.398e-25
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0
Query:   12 LEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGGYRPAYALENWTLERANR 93
             EPSSPGWP F+RVN +L W Y  +W FLRR+ LPY  +YD G+TSLG    TV NP LRR  GGY PAY L +   ERA R
Sbjct:   67 FEPSSPGWPPFMRVNAVLDWTYADVWHFLRRWRLPYAPIYDAGFTSLGGVSNTVANPTLRRPGGGYAPAYCLADARDERAGR 148          
BLAST of EWM30113.1 vs. NCBI_GenBank
Match: gi|731259470|ref|XP_010642210.1| (PREDICTED: FAD synthase isoform X1 [Fukomys damarensis] >gi|731259472|ref|XP_010642211.1| PREDICTED: FAD synthase isoform X1 [Fukomys damarensis] >gi|676269575|gb|KFO24931.1| FAD synthase [Fukomys damarensis])

HSP 1 Score: 110.538 bits (275), Expect = 5.688e-25
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0
Query:   12 LEPSSPGWPVFLRVNPLLTWDYGQIWDFLRRFSLPYCRLYDEGYTSLGDTRTTVRNPALRRLEGG----YRPAYALENWTLERANR 93
              P+ PGWPVF+R+NPLL W Y  IWDFLR+  +PYC LYD+GYTSLG    TVRNPAL+ L  G    YRPAY LE    ER  R
Sbjct:  400 FSPTDPGWPVFMRINPLLDWTYSNIWDFLRQLFIPYCVLYDQGYTSLGSPENTVRNPALKCLSPGGPPTYRPAYLLEKEEEERNAR 485          
The following BLAST results are available for this feature:
BLAST of EWM30113.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112759|gb|EWM30113.1|7.897e-139100.00fad synthase [Nannochloropsis gaditana][more]
gi|676379227|ref|XP_009032892.1|1.395e-2757.14hypothetical protein AURANDRAFT_8492, partial [Aur... [more]
gi|1040298153|gb|OBS83131.1|9.469e-2660.92hypothetical protein A6R68_22909 [Neotoma lepida][more]
gi|93099905|gb|AAH09152.2|1.863e-2556.32Lenep protein, partial [Mus musculus][more]
gi|1149850521|ref|XP_020140885.1|1.892e-2559.30FAD synthase isoform X3 [Microcebus murinus][more]
gi|873231991|emb|CEM06680.1|2.126e-2562.20unnamed protein product [Vitrella brassicaformis C... [more]
gi|532048926|ref|XP_005367238.1|3.725e-2558.62PREDICTED: FAD synthase [Microtus ochrogaster] >gi... [more]
gi|1214703198|gb|OWZ15256.1|4.229e-2556.52FAD synthetase [Phytophthora megakarya][more]
gi|1189392867|gb|OSX79772.1|4.398e-2558.54hypothetical protein BU14_0071s0026 [Porphyra umbi... [more]
gi|731259470|ref|XP_010642210.1|5.688e-2559.30PREDICTED: FAD synthase isoform X1 [Fukomys damare... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna560rna560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications