rna5599, rna5599 (mRNA) Nannochloropsis gaditana

Overview
Namerna5599
Unique Namerna5599
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1098
Alignment locationCM002466.1:375948..377347 -

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Properties
Property NameValue
Productgram domain-containing protein 1a
Orig transcript idgnl|cribi|Naga_100016g5.2964.mrna
Orig protein idgnl|cribi|Naga_100016g5.2964
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:375948..377347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g5gene5411Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5599rna5599-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25155.1cds5585Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5599 ID=rna5599|Name=rna5599|organism=Nannochloropsis gaditana|type=mRNA|length=1098bp
ATGCAAGCCCATCCGCTCAAGGAGAGGGGCCTCGAGTTCGCACTCCGGAA
AACTACAGTACAAGAGTTCTTCCGGGACTTCATCTCCGACAAAGCTGTCC
TGGGAATCGACAAGTACCACGAATGGCAGGGCGACAAGGATGTGGAGGTG
TCGCCCTGGCAAGAGGTCAACCAGGGAGTGGGCGCCACCCGGGTGGTTCG
CTTTGTCTCGAGCCTGGAGGGACTTCCCGTCGGGCCGCCCACGGCTCTAG
TCATGCAATTACAGCGTGTGCGGGTCTTCGGTCAACATGGGATGGTCCTG
GAGACATCTTCCTCCATGGAGAACGTGCCCGCGGGAGATTGCTTTACGCT
GGAAGATCGCTGGGTGGTCCGACCCCTGCCCGCCTCTGAGGCCCCGACGA
GGACAGAAGCCGGCGCCCTGTCCATCGAGACGTCCTTCGAGGTCAGGTTT
GTGAAAAGCACATTGTTCAAGAAGATAATCGAAAGTCGGTCTCGGGCGGA
TACTCTGGAGTATCACCGCCGCTGGTTCGAGATGATTGAAAAGCATGTGG
CACGTCGACACCACGAGCGATCCCGCACGCGTGAACAGGCGCGTCGTTCC
TCACACCCACTACGACGGACCGTGGAAAACAATGCAGGGAGGGGAGAAAA
GACTGTCGGCCCTCCACCTTGTCAAACGGATCAAATGGGATCGTTTCGTC
CTCGCAGTCCTTGTCTTCACCCTCGTCTTCTATCTCCTCCGCCTTGTGCT
CAATACGATGCTCCCGGTGTCCCTACGGTTTGCGCCTCAAATGGGGCGGC
AAATGGACGTACCGTCTCCCCTGACTGTGGAGCAATGGCGGGACATTCTT
TCGGAGCTGACTGCCTTGCGGGCCGAGTTGCAAGAGATGCGACTGGAGAT
CCGCGCCCTGATCTCAAAGTCAGGGCCCGAGGGTCGTTGAGGCTCGTGGA
CTTAACAAGTGACAGCCACGCGACCTGCGTAAGATACCATGGGGCTGCCC
GGAGAGTAATGAGAAATGTTGAGGCATTTTCTGTATTCTCTCCTTGTTCA
CTGGAGGGAGGGACGTGTAATGATGAGGTGTACATTGGGACAAATTGA
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protein sequence of rna5599

>rna5599-protein ID=rna5599-protein|Name=rna5599|organism=Nannochloropsis gaditana|type=polypeptide|length=430bp
MTQESSPHSASAPSTFSSPSLSTATTESVGGRRRSRDLMIDEDTPMSSSA
SAPSLPPANSSLSPHHSSEQQHQQPSMVRRSSGSSYSKRESFVRTPEDSF
RDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGF
EKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQ
MARCFRAYHRMQSVPREAVMECRSLDRTGRIENSTATVVEDGGGPMAGTG
RPQTASSMSASYSQQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHP
PLPPEPRSQGPSQQPSVSTHGEGGTGPPYGISGEPVGGEFLPARAPSDET
GGFPQHPDTPGPGPTLAAPSSPDLSLPPPLDVHPVDAYEEAGEGERRDVS
RGATSPSPLAPGGGSRWVPARTTACGIWTS
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mRNA from alignment at CM002466.1:375948..377347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5599 ID=rna5599|Name=rna5599|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp|location=Sequence derived from alignment at CM002466.1:375948..377347- (Nannochloropsis gaditana)
ATGACACAAGAGTCCTCTCCCCATTCCGCCTCGGCTCCATCGACATTTAG
TTCACCATCATTAAGCACCGCTACAACCGAATCTGTCGGAGGTCGTCGGC
GGAGTCGAGATTTAATGATTGATGAGGATACTCCAATGAGCAGCTCGGCA
TCGGCGCCTTCATTGCCTCCGGCAAATTCTTCACTTTCGCCCCACCATTC
GTCGGAGCAACAACACCAGCAGCCGTCGATGGTACGACGATCTTCTGGCA
GCTCGTATTCAAAAAGAGAGTCGTTCGTGCGCACTCCCGAAGACTCCTTC
CGAGACGAGATAGTTCGGCAAATTTTTGGAGAGAACTTAGGTTGCATTCG
AGATGACGCATCCTGCGCTGTGGAAAGCAAAATTTTGTTACACGGACGTA
TATATATCACTGATAAATTCGTATGGTAAGAACGGGGCACTAATAAGGGA
GGGAGCGGACGAAAGACAACCATCTTGAGAGTGAGGACGAGGATGACGCC
ATCACCCGTCTCATAGGCTTTTCCTCCGATAGTTTTTACAGCAATTTCTT
TGGCTTCGAAAAGAAAATCAAGATTCCCTTCTCCCAAGTACGGACGCTGA
GCAAAGGCAACACGGCCTTGCTGATCCCGAACTGCATAATCATTCAGACC
CACGGCAAAGAGTACTGCTTCCGGTCGTTCTGGGACCGCGACGAGTGTTT
CTGGCAGATGGCCCGGTGCTTCCGAGCATACCACCGCATGCAATCGGTCC
CGCGTGAGGCCGTCATGGAGTGTCGCTCTCTCGACAGAACGGGCAGGATT
GAGAATAGTACCGCCACTGTGGTGGAGGACGGGGGCGGGCCCATGGCGGG
CACCGGGCGCCCCCAAACCGCGTCGTCTATGTCTGCTTCCTACAGCCAGC
AGCAGCCCCAGCAGTTTCGACGGCAGCAGTCGGGTCATCGCAAAGGGCCC
CAGAAACAGGAGGAGCATCGGGAGGCCGGGGCGGAGGACAGACGCGGTTC
CCACCCGCCCCTGCCCCCGGAACCGCGGTCGCAAGGGCCCTCGCAGCAAC
CCTCGGTCTCCACCCACGGAGAAGGAGGCACAGGACCGCCATATGGGATC
TCAGGGGAGCCGGTGGGTGGAGAGTTTCTCCCGGCACGGGCGCCATCGGA
TGAGACAGGCGGGTTCCCGCAGCACCCTGACACACCGGGGCCTGGTCCCA
CTCTTGCCGCCCCCTCGTCTCCCGACCTTTCTCTCCCGCCACCCTTAGAC
GTCCACCCTGTCGACGCCTATGAAGAGGCCGGCGAGGGGGAGCGGCGAGA
CGTGTCTCGAGGGGCGACTTCGCCCTCTCCCCTCGCGCCGGGGGGGGGGT
CTCGTTGGGTTCCGGCGAGGACGACGGCATGTGGGATCTGGACGAGCTAA
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Coding sequence (CDS) from alignment at CM002466.1:375948..377347-

>rna5599 ID=rna5599|Name=rna5599|organism=Nannochloropsis gaditana|type=CDS|length=2586bp|location=Sequence derived from alignment at CM002466.1:375948..377347- (Nannochloropsis gaditana)
TTTTTACAGCAATTTCTTTGGCTTCGAAAAGAAAATCAAGATTCCCTTCT
CCCAAGTACGGACGCTGAGCAAAGGCAACACGGCCTTGCTGATCCCGAAC
TGCATAATCATTCAGACCCACGGCAAAGAGTACTGCTTCCGGTCGTTCTG
GGACCGCGACGAGTGTTTCTGGCAGATGGCCCGGTGCTTCCGAGCATACC
ACCGCATGCAATCGGTCCCGCGTGAGGCCGTCATGGAGTGTCGCTCTCTC
GACAGAACGGGCAGGATTGAGAATAGTACCGCCACTGTGGTGGAGGACGG
GGGCGGGCCCATGGCGGGCACCGGGCGCCCCCAAACCGCGTCGTCTATGT
CTGCTTCCTACAGCCAGCAGCAGCCCCAGCAGTTTCGACGGCAGCAGTCG
GGTCATCGCAAAGGGCCCCAGAAACAGGAGGAGCATCGGGAGGCCGGGGC
GGAGGACAGACGCGGTTCCCACCCGCCCCTGCCCCCGGAACCGCGGTCGC
AAGGGCCCTCGCAGCAACCCTCGGTCTCCACCCACGGAGAAGGAGGCACA
GGACCGCCATATGGGATCTCAGGGGAGCCGGTGGGTGGAGAGTTTCTCCC
GGCACGGGCGCCATCGGATGAGACAGGCGGGTTCCCGCAGCACCCTGACA
CACCGGGGCCTGGTCCCACTCTTGCCGCCCCCTCGTCTCCCGACCTTTCT
CTCCCGCCACCCTTAGACGTCCACCCTGTCGACGCCTATGAAGAGGCCGG
CGAGGGGGAGCGGCGAGACGTGTCTCGAGGGGCGACTTCGCCCTCTCCCC
TCGCGCCGGGGGGGGGGTCTCGTTGGGTTCCGGCGAGGACGACGGCATGT
GGGATCTGGACGAGCTAAATGACACAAGAGTCCTCTCCCCATTCCGCCTC
GGCTCCATCGACATTTAGTTCACCATCATTAAGCACCGCTACAACCGAAT
CTGTCGGAGGTCGTCGGCGGAGTCGAGATTTAATGATTGATGAGGATACT
CCAATGAGCAGCTCGGCATCGGCGCCTTCATTGCCTCCGGCAAATTCTTC
ACTTTCGCCCCACCATTCGTCGGAGCAACAACACCAGCAGCCGTCGATGG
TACGACGATCTTCTGGCAGCTCGTATTCAAAAAGAGAGTCGTTCGTGCGC
ACTCCCGAAGACTCCTTCCGAGACGAGATAGTTCGGCAAATTTTTGGAGA
GAACTTAGGTTGCATTCGAGATGACGCATCCTGCGCTGTGGAAAGCAAAA
TTTTGTTACACGGACGTATATATATCACTGATAAATTCGTATGTTTTTAC
AGCAATTTCTTTGGCTTCGAAAAGAAAATCAAGATTCCCTTCTCCCAAGT
ACGGACGCTGAGCAAAGGCAACACGGCCTTGCTGATCCCGAACTGCATAA
TCATTCAGACCCACGGCAAAGAGTACTGCTTCCGGTCGTTCTGGGACCGC
GACGAGTGTTTCTGGCAGATGGCCCGGTGCTTCCGAGCATACCACCGCAT
GCAATCGGTCCCGCGTGAGGCCGTCATGGAGTGTCGCTCTCTCGACAGAA
CGGGCAGGATTGAGAATAGTACCGCCACTGTGGTGGAGGACGGGGGCGGG
CCCATGGCGGGCACCGGGCGCCCCCAAACCGCGTCGTCTATGTCTGCTTC
CTACAGCCAGCAGCAGCCCCAGCAGTTTCGACGGCAGCAGTCGGGTCATC
GCAAAGGGCCCCAGAAACAGGAGGAGCATCGGGAGGCCGGGGCGGAGGAC
AGACGCGGTTCCCACCCGCCCCTGCCCCCGGAACCGCGGTCGCAAGGGCC
CTCGCAGCAACCCTCGGTCTCCACCCACGGAGAAGGAGGCACAGGACCGC
CATATGGGATCTCAGGGGAGCCGGTGGGTGGAGAGTTTCTCCCGGCACGG
GCGCCATCGGATGAGACAGGCGGGTTCCCGCAGCACCCTGACACACCGGG
GCCTGGTCCCACTCTTGCCGCCCCCTCGTCTCCCGACCTTTCTCTCCCGC
CACCCTTAGACGTCCACCCTGTCGACGCCTATGAAGAGGCCGGCGAGGGG
GAGCGGCGAGACGTGTCTCGAGGGGCGACTTCGCCCTCTCCCCTCGCGCC
GGGGGGGGGGTCTCGTTGGGTTCCGGCGAGGACGACGGCATGTGGGATCT
GGACGAGCTAAATGACACAAGAGTCCTCTCCCCATTCCGCCTCGGCTCCA
TCGACATTTAGTTCACCATCATTAAGCACCGCTACAACCGAATCTGTCGG
AGGTCGTCGGCGGAGTCGAGATTTAATGATTGATGAGGATACTCCAATGA
GCAGCTCGGCATCGGCGCCTTCATTGCCTCCGGCAAATTCTTCACTTTCG
CCCCACCATTCGTCGGAGCAACAACACCAGCAGCCGTCGATGGTACGACG
ATCTTCTGGCAGCTCGTATTCAAAAAGAGAGTCGTTCGTGCGCACTCCCG
AAGACTCCTTCCGAGACGAGATAGTTCGGCAAATTTTTGGAGAGAACTTA
GGTTGCATTCGAGATGACGCATCCTGCGCTGTGGAAAGCAAAATTTTGTT
ACACGGACGTATATATATCACTGATAAATTCGTATG
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Synonyms
Publications