EWM25155.1, cds5585 (CDS) Nannochloropsis gaditana

Overview
NameEWM25155.1
Unique Namecds5585
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:376923..377347 -
Alignment locationCM002466.1:375948..376815 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25155.1
Productgram domain-containing protein 1a
Orig transcript idgnl|cribi|Naga_100016g5.2964.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:376923..377347 -
CM002466.1supercontigCM002466.1:375948..376815 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM
Homology
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|585106793|gb|EWM25155.1| (gram domain-containing protein 1a [Nannochloropsis gaditana])

HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MTQESSPHSASAPSTFSSPSLSTATTESVGGRRRSRDLMIDEDTPMSSSASAPSLPPANSSLSPHHSSEQQHQQPSMVRRSSGSSYSKRESFVRTPEDSFRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFRAYHRMQSVPREAVMECRSLDRTGRIENSTATVVEDGGGPMAGTGRPQTASSMSASYSQQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGTGPPYGISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPPPLDVHPVDAYEEAGEGERRDVSRGATSPSPLAPGGGSRWVPARTTACGIWTS 430
            MTQESSPHSASAPSTFSSPSLSTATTESVGGRRRSRDLMIDEDTPMSSSASAPSLPPANSSLSPHHSSEQQHQQPSMVRRSSGSSYSKRESFVRTPEDSFRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFRAYHRMQSVPREAVMECRSLDRTGRIENSTATVVEDGGGPMAGTGRPQTASSMSASYSQQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGTGPPYGISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPPPLDVHPVDAYEEAGEGERRDVSRGATSPSPLAPGGGSRWVPARTTACGIWTS
Sbjct:    1 MTQESSPHSASAPSTFSSPSLSTATTESVGGRRRSRDLMIDEDTPMSSSASAPSLPPANSSLSPHHSSEQQHQQPSMVRRSSGSSYSKRESFVRTPEDSFRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFRAYHRMQSVPREAVMECRSLDRTGRIENSTATVVEDGGGPMAGTGRPQTASSMSASYSQQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGTGPPYGISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPPPLDVHPVDAYEEAGEGERRDVSRGATSPSPLAPGGGSRWVPARTTACGIWTS 430          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|298706349|emb|CBJ29358.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.436 bits (363), Expect = 1.043e-33
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 0
Query:  100 FRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARC 204
            +R++IVR IFGE +G   +D SCAVES+ILLHGR+Y+T+ FVCFYSN FGFEK IKIPF  +R ++K  TAL IPN I I T  KEY FRSFWDR++ F  + +C
Sbjct:   18 YREDIVRSIFGE-VGKPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAIITSKKEYIFRSFWDREDAFKTLKQC 121          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|676382923|ref|XP_009034740.1| (hypothetical protein AURANDRAFT_3287, partial [Aureococcus anophagefferens] >gi|323454247|gb|EGB10117.1| hypothetical protein AURANDRAFT_3287, partial [Aureococcus anophagefferens])

HSP 1 Score: 127.487 bits (319), Expect = 1.774e-32
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 0
Query:  119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECF 198
            D SCA+E KILLHGR+Y+T++F+CFYSN FGFEKKIKIP+S +  ++K  TA+ IPN I + T  KEY FRSFWDRD+CF
Sbjct:    2 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHITCITKEYTAVFIPNAIAVITARKEYVFRSFWDRDDCF 81          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|299116574|emb|CBN74762.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.316 bits (290), Expect = 3.564e-24
Identity = 49/105 (46.67%), Postives = 76/105 (72.38%), Query Frame = 0
Query:   95 TPED-SFRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTH-GKEYCFRSFWDRDEC 197
            T ED + R++I  QIFG ++G +  D SCA + K+++HGR+Y+T++ +CFY+NFFG E K+ +    V   SKGN+A+ IPN +++Q   GK++ FR+FW+RDEC
Sbjct:   55 TAEDLALREDICYQIFG-DVGPLIRDFSCAWDHKVVMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCSKGNSAIFIPNVVVVQDKSGKDFVFRAFWERDEC 158          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|1176328975|ref|XP_020667526.1| (GRAM domain-containing protein 1A isoform X2 [Pogona vitticeps])

HSP 1 Score: 96.6709 bits (239), Expect = 8.789e-18
Identity = 92/313 (29.39%), Postives = 134/313 (42.81%), Query Frame = 0
Query:  101 RDEIVRQIF-----GENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFR-AYHRMQSVPRE---AVMECR--SLDRTGRIENSTATVVE-DGGGPMAGTGRPQTASSMSASYS-----QQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGT----------GPPYG-ISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPP-PLDVHP 384
            R+E  R+IF      E L     D SCA++  ILL GR+Y+++ ++CFYSN F +E  I I    V+ + K  TA LIPN I I T  +++ F SF  RD CF  + R ++ A    Q  PRE    V +C    L  T   ++  + V E +G G     G     S +++  S        P   +R+ S          +   + AED           P     SQ  + S+H               GPP   + GEP+  E LP    +  +    +   +P P  T+ +P  P+L L P PL   P
Sbjct:  103 RNEDFRRIFKGLPEAERLLV---DYSCALQRDILLQGRLYLSENWICFYSNIFRWETTISIQLKDVKCIKKEKTAKLIPNAIQICTETEKHFFTSFGARDRCFMLIFRLWQNALLEKQLSPRELWHIVHQCYGSELGLTSEDDDYVSPVDEINGLGTSKEIGDVIDLSDLTSRCSADLKLDTSPLLDKREASQSITSLASSSDGTTSLAED-----------PEENTDSQVDASSSHTVTSATEPPQDNVPRGPPLSPLEGEPLPSEELPTDMSNSSSSTQDEGEGSPDPALTVPSPPLPNLGLEPRPLAAQP 401          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|1176328973|ref|XP_020667525.1| (GRAM domain-containing protein 1A isoform X1 [Pogona vitticeps])

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-17
Identity = 92/313 (29.39%), Postives = 134/313 (42.81%), Query Frame = 0
Query:  101 RDEIVRQIF-----GENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFR-AYHRMQSVPRE---AVMECR--SLDRTGRIENSTATVVE-DGGGPMAGTGRPQTASSMSASYS-----QQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGT----------GPPYG-ISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPP-PLDVHP 384
            R+E  R+IF      E L     D SCA++  ILL GR+Y+++ ++CFYSN F +E  I I    V+ + K  TA LIPN I I T  +++ F SF  RD CF  + R ++ A    Q  PRE    V +C    L  T   ++  + V E +G G     G     S +++  S        P   +R+ S          +   + AED           P     SQ  + S+H               GPP   + GEP+  E LP    +  +    +   +P P  T+ +P  P+L L P PL   P
Sbjct:  103 RNEDFRRIFKGLPEAERLLV---DYSCALQRDILLQGRLYLSENWICFYSNIFRWETTISIQLKDVKCIKKEKTAKLIPNAIQICTETEKHFFTSFGARDRCFMLIFRLWQNALLEKQLSPRELWHIVHQCYGSELGLTSEDDDYVSPVDEINGLGTSKEIGDVIDLSDLTSRCSADLKLDTSPLLDKREASQSITSLASSSDGTTSLAED-----------PEENTDSQVDASSSHTVTSATEPPQDNVPRGPPLSPLEGEPLPSEELPTDMSNSSSSTQDEGEGSPDPALTVPSPPLPNLGLEPRPLAAQP 401          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|1176328983|ref|XP_020667530.1| (GRAM domain-containing protein 1A isoform X6 [Pogona vitticeps] >gi|1176328985|ref|XP_020667532.1| GRAM domain-containing protein 1A isoform X6 [Pogona vitticeps])

HSP 1 Score: 95.9005 bits (237), Expect = 1.566e-17
Identity = 92/313 (29.39%), Postives = 134/313 (42.81%), Query Frame = 0
Query:  101 RDEIVRQIF-----GENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFR-AYHRMQSVPRE---AVMECR--SLDRTGRIENSTATVVE-DGGGPMAGTGRPQTASSMSASYS-----QQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGT----------GPPYG-ISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPP-PLDVHP 384
            R+E  R+IF      E L     D SCA++  ILL GR+Y+++ ++CFYSN F +E  I I    V+ + K  TA LIPN I I T  +++ F SF  RD CF  + R ++ A    Q  PRE    V +C    L  T   ++  + V E +G G     G     S +++  S        P   +R+ S          +   + AED           P     SQ  + S+H               GPP   + GEP+  E LP    +  +    +   +P P  T+ +P  P+L L P PL   P
Sbjct:   15 RNEDFRRIFKGLPEAERLLV---DYSCALQRDILLQGRLYLSENWICFYSNIFRWETTISIQLKDVKCIKKEKTAKLIPNAIQICTETEKHFFTSFGARDRCFMLIFRLWQNALLEKQLSPRELWHIVHQCYGSELGLTSEDDDYVSPVDEINGLGTSKEIGDVIDLSDLTSRCSADLKLDTSPLLDKREASQSITSLASSSDGTTSLAED-----------PEENTDSQVDASSSHTVTSATEPPQDNVPRGPPLSPLEGEPLPSEELPTDMSNSSSSTQDEGEGSPDPALTVPSPPLPNLGLEPRPLAAQP 313          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|1176328987|ref|XP_020667533.1| (GRAM domain-containing protein 1A isoform X7 [Pogona vitticeps] >gi|1176328989|ref|XP_020667534.1| GRAM domain-containing protein 1A isoform X7 [Pogona vitticeps])

HSP 1 Score: 95.5153 bits (236), Expect = 1.831e-17
Identity = 92/313 (29.39%), Postives = 134/313 (42.81%), Query Frame = 0
Query:  101 RDEIVRQIF-----GENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFR-AYHRMQSVPRE---AVMECR--SLDRTGRIENSTATVVE-DGGGPMAGTGRPQTASSMSASYS-----QQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGT----------GPPYG-ISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPP-PLDVHP 384
            R+E  R+IF      E L     D SCA++  ILL GR+Y+++ ++CFYSN F +E  I I    V+ + K  TA LIPN I I T  +++ F SF  RD CF  + R ++ A    Q  PRE    V +C    L  T   ++  + V E +G G     G     S +++  S        P   +R+ S          +   + AED           P     SQ  + S+H               GPP   + GEP+  E LP    +  +    +   +P P  T+ +P  P+L L P PL   P
Sbjct:    9 RNEDFRRIFKGLPEAERLLV---DYSCALQRDILLQGRLYLSENWICFYSNIFRWETTISIQLKDVKCIKKEKTAKLIPNAIQICTETEKHFFTSFGARDRCFMLIFRLWQNALLEKQLSPRELWHIVHQCYGSELGLTSEDDDYVSPVDEINGLGTSKEIGDVIDLSDLTSRCSADLKLDTSPLLDKREASQSITSLASSSDGTTSLAED-----------PEENTDSQVDASSSHTVTSATEPPQDNVPRGPPLSPLEGEPLPSEELPTDMSNSSSSTQDEGEGSPDPALTVPSPPLPNLGLEPRPLAAQP 307          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|1176328981|ref|XP_020667529.1| (GRAM domain-containing protein 1A isoform X5 [Pogona vitticeps])

HSP 1 Score: 94.7449 bits (234), Expect = 3.628e-17
Identity = 85/290 (29.31%), Postives = 125/290 (43.10%), Query Frame = 0
Query:  119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFR-AYHRMQSVPRE---AVMECR--SLDRTGRIENSTATVVE-DGGGPMAGTGRPQTASSMSASYS-----QQQPQQFRRQQSGHRKGPQKQEEHREAGAEDRRGSHPPLPPEPRSQGPSQQPSVSTHGEGGT----------GPPYG-ISGEPVGGEFLPARAPSDETGGFPQHPDTPGPGPTLAAPSSPDLSLPP-PLDVHP 384
            D SCA++  ILL GR+Y+++ ++CFYSN F +E  I I    V+ + K  TA LIPN I I T  +++ F SF  RD CF  + R ++ A    Q  PRE    V +C    L  T   ++  + V E +G G     G     S +++  S        P   +R+ S          +   + AED           P     SQ  + S+H               GPP   + GEP+  E LP    +  +    +   +P P  T+ +P  P+L L P PL   P
Sbjct:   48 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETTISIQLKDVKCIKKEKTAKLIPNAIQICTETEKHFFTSFGARDRCFMLIFRLWQNALLEKQLSPRELWHIVHQCYGSELGLTSEDDDYVSPVDEINGLGTSKEIGDVIDLSDLTSRCSADLKLDTSPLLDKREASQSITSLASSSDGTTSLAED-----------PEENTDSQVDASSSHTVTSATEPPQDNVPRGPPLSPLEGEPLPSEELPTDMSNSSSSTQDEGEGSPDPALTVPSPPLPNLGLEPRPLAAQP 326          
BLAST of EWM25155.1 vs. NCBI_GenBank
Match: gi|931605917|ref|XP_008967472.2| (PREDICTED: GRAM domain-containing protein 1A isoform X3 [Pan paniscus])

HSP 1 Score: 93.9745 bits (232), Expect = 7.229e-17
Identity = 65/201 (32.34%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   80 RSSGSSYSKRESFVRTPEDSFRDEIVRQIF-----GENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQTHGKEYCFRSFWDRDECFWQMARCFRAYHRMQSV-PRE---AVMECR--SLDRTGRIENSTATVVEDGGGPMAGTGRPQTASSMSASYSQQQPQQ 269
            +S GS    R S + +P    R+E  R++F      E L     D SCA++ +ILL GR+Y+++ ++CFYSN F +E  I I   +V  L K  TA LIPN I I T  +++ F SF  RD CF  + R ++     +++ PRE    V +C    L  T   E+  + +  +G G     G     S +++S +  + Q+
Sbjct:  180 QSLGSRNFIRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIV---DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIALSDITSSGAADRSQE 377          
The following BLAST results are available for this feature:
BLAST of EWM25155.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106793|gb|EWM25155.1|0.000e+0100.00gram domain-containing protein 1a [Nannochloropsis... [more]
gi|298706349|emb|CBJ29358.1|1.043e-3360.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|676382923|ref|XP_009034740.1|1.774e-3265.00hypothetical protein AURANDRAFT_3287, partial [Aur... [more]
gi|299116574|emb|CBN74762.1|3.564e-2446.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|1176328975|ref|XP_020667526.1|8.789e-1829.39GRAM domain-containing protein 1A isoform X2 [Pogo... [more]
gi|1176328973|ref|XP_020667525.1|1.001e-1729.39GRAM domain-containing protein 1A isoform X1 [Pogo... [more]
gi|1176328983|ref|XP_020667530.1|1.566e-1729.39GRAM domain-containing protein 1A isoform X6 [Pogo... [more]
gi|1176328987|ref|XP_020667533.1|1.831e-1729.39GRAM domain-containing protein 1A isoform X7 [Pogo... [more]
gi|1176328981|ref|XP_020667529.1|3.628e-1729.31GRAM domain-containing protein 1A isoform X5 [Pogo... [more]
gi|931605917|ref|XP_008967472.2|7.229e-1732.34PREDICTED: GRAM domain-containing protein 1A isofo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5599rna5599Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications