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Properties
Property Name | Value |
Product | Chromatin assembly factor 1 subunit A |
Orig transcript id | gnl|cribi|Naga_100016g8.2941.mrna |
Orig protein id | gnl|cribi|Naga_100016g8.2941 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002466.1 | supercontig | CM002466.1:368018..370432 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5596 ID=rna5596|Name=rna5596|organism=Nannochloropsis gaditana|type=mRNA|length=2400bp ATGAGCGAAATATTGATGGCAAAGCTCCGCGAGGGCAAACCTCCTAAGAA CGCTAAGATATTAAACATCCTCCGTGAGCAAGTGCATCAACTTGGCCAAG ACACAGAAACTATATCACACAGTCTAGACTTTGCCCAAGCATTGGCTGAG CTATTGCCACGACTTCGAGACACGGACAACGACAGCAGGAAACTCGCTCG CTTGGTATATTTTTTTATTACCGAGATATGCGCACATCATGCAAGGACAT GCGACGCAGCGATCTTTCTGGAAGCAGTTCTTGCAGATTTTCGGTCCGCT ACTTATTTTCCGAGACAAGTGGTTGCGGTACAGTCTCTTGGTCTCCTGTC CTCGCAGTACTACCATCATCATCGTTCAAAAGATGAGCTTCGGAGGGAGG AAGTTTACCTAGAAACTCTCTCGCTTGTGCAAAAATCTTGCTCAGATTTG CAACGTCTACCTCCTTCTTTGGAGAAGCTTGGTGGCGAGATTGTTGGGAG CGGTAAGAAGACCAAGGAGTTTGCCGAGATCCTAGCGCTGTCGGGTGCGC TATCGCTGATGATGCGACATGTACTGAAGCACTTCGATTGTTGTCCACCG GAATGGATGGCATACATGTACACGGTATGTCACGCTCCTGGAAGCTTGAG AGCAAATGATGACGGGACTCGTGCATGCCATGCCGCGTTATGGGAGCTGG CGCTCAAATCAAAAAGCGCAAGAGCTGAGATGGCCATTCATTTGCTCTCC AACAAGAAAATTCATTCATCTAGCGCATTGTCAGATATCTTGGCGTGCGT CTTCTACCTTCGCACTTGTGCTTGCATCGCCTCTTCAACCGGACAAGATG TACCACCTGCTACGACCGAGGCTTTCTTTCAAGTACTTAAAGACGCGGCG CTAAAGGACAAGCGCCTGCAAGTCAGCCTGGAGGCTATCAACCTTTTATA CCAGTTTTCGTGGCATGAGTTCGGGACGCTTTCCTCCACGCGGGCCTCGG ACGTCCCTGCCATCGCGAAGGTCTTGCAGCACGCGGTTGAAGAACCGGCA GCGCAACTCACGACACTCCATGCCGTTTTCGGAGCGATGCGTACGATGGC CAAATGGCTTGTTCGGTACCAGTATGAAGGGGAAAAGGGTGATGAGTTCA CCCTGATCGCTCAAGCCGATATAGGGGAAGAAGATGCCGGCTACATGCAT GCCGGCGTCTTGAAGAGGCTGAGAAACACTATCACGAGCAGGGCGGATGC ACTCGAGTCTTCAAAAACACTCTCAACACAGCTACGTCTGTCCTTATTAC AAACTCTGATTTGGCTCGTACCATCGCTACCTCGAGCCTCGTTTCCCAGC AATGCTAGCAACAGGTACAACAGCAGAATTTCGTTTTCAGCTCTCTCCCT ATCGCAGCCTGGAGGGGAGCCTGTGCTCTCTAGCTTAACGTCCTTGAGCA CCTCCGATGAGAGCCAGTTGTGGCAAGACTTGGAAAGACGCCTAGCTGAA GCGCCTGCGTACTTCACAGACGTCCAGCTCGGACTCCTCCTTGAGGAGGG ACGAGACCGTATGAGCGTGGAAGCCGTCTCTTCCTCGTCGGGCCCTTCCA GCCGAATCTTGGCCTCCTTGCTCTCTCGCACTTCACGCATATATTTCAAT GTTGCCCCTACGGATGCAATGGCTGAATATCTCATCAAGACCTGGGAAGG CCTTCTGTCTCCCAGGCCCTCCGATCCCGTCATTCAAGCGGAGCTTCTGG CCGCAATATTTTGTGTGCTGGACCTCGATTTCTGTCCTAAACCGGCGAGC GGCAACACCCACATTTATTTCAAAGCTGGTATTCGTCCTCAGGCGGTTTG GCAGACCCAAGGGCAGGTTCAGGAGCCGAGTTGTACCCAAAAGCGTGCCA TCTACGCTCGACTCTTGCGCCTAGCGTCCTGGTTCCTCGGCGAGCACGCG TTGCGGTTCACAACCGAGCAGCTAGGCGTGATAGTACTCCGGTTGAAGAC ACTGAGTCTCTTTTCAGATTGCTTCACCCAGTATGAAGCTGTTCAGGCTT TGTGCAAAGTGGCAGTTTGTTGCGAACAGGCAGACATCCAGGTCGAGCTC TATGAATTCCTGCGTGACTTCACTTGCGCCGACCTCAAGTCCCCTTTGAC CGGCATCAACGAAGTGGGCATGTCAACGTTTGGAGAGGCGCATGAGAATG AAGACCAGGCGCAAAAGCTGTCGTTTGGGGTCGGTAACGGGTTCGGATCG CAGGAAGATTGTGTTGCGGCGACTCTGGAGCATCTCCGCGGTGTATTCCG CGATCATCTCAAGTCCCTGGGACTTGACCCCCCAGGAGATCCTTCTCAAT CCTCCATTGTGGGTGTTTCGCTCTTTGTCGTTCAAAATGCGAAAGAGTGA back to topprotein sequence of rna5596 >rna5596-protein ID=rna5596-protein|Name=rna5596|organism=Nannochloropsis gaditana|type=polypeptide|length=777bp MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKER QEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAP ALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGI SDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKA HRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPY YGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAE NDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSED RGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYF GAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETG SSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKA QVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPP VDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSD SESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGG GGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIA SEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFEL YRLMLRQKQVQNGVKYKRYYVINISIM back to topmRNA from alignment at CM002466.1:368018..370432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5596 ID=rna5596|Name=rna5596|organism=Nannochloropsis gaditana|type=mRNA|length=2415bp|location=Sequence derived from alignment at CM002466.1:368018..370432- (Nannochloropsis gaditana) ATGGAGCTTGTGAAGCAACGCCAAGCTCTTGCCGAGAAGAAGCACGAGGA
GAGGCAGAGGGCTGTGGCCGAAAAAGCCGAAAAAGCCCGTTCGCGCCAAG
AGGAGAAGGCACGCAAGAAGGAGGAGCGGGAACAGAAGGAAAAGGAGCGG
CAAGAGGAGAAGAGGCAGAAGGAAGAGGCTGCGGCCGCGGCGGCAGCGGC
TGATGGAGACGACGGGGACGAAAGTGGGAAAAAAAAAAGTGTCACGGCGT
TGGACGTGAAACAGCCTGCAATCTCCGCCTTCTTCAAGGCCAAAGCGCCC
GCCCTGGACACAGCACAGAAGGTACACCCTGGTAGGCTTGTGAGCTTGTC
GGGACCCTCCACTCTTCTTGGCGGCCTTCTGCCTGGAGACGCGAAAGGGA
CTCCGGGCGCGAAAATGGGCGGCGAGACAGGGGAGGATGGCGGCGGCATC
AGTGACGTGCAGATGGCTATTGCAGCCAAGGTGGAGATAATGGATGCCAT
ACTGAAGAAAGGTCCCATGGACCGAGAGGAACTCTTGAAAGACCTGCGAT
TGCGCGGCAAGACTGCGCTTTGCACACCGCGCAACCCGAAGCACAAAGCC
CATCGGTTTCAGACGGTACATGTGACGGTGACGCACAGGGCCGCTGAGGG
GGGCATGTGGGCACAGCCGGAATTCGCCGTGCTGGAGGAAAAGCGCCTGT
GGAATGCAATGAAATTTCTCTCTTTTGCTGAGGACGTGCGCCCGCCTTAC
TATGGGACCTGGTCGCGACGCAGCCGAGAAGTCAGGCCTCGGCATTTCTG
GGGAAAATCCAAGCTGCTCGATTACGACTACGATTCGGAGGAGGACTGGG
AGGAAGGGGAGGAAGACGGTGACGGGGAGAACCTTTCTGTGACGGCCGAG
AACGACCGGGAGGAGGACCAGGACCCTCACGACGGCTTGGACTACACGGA
CGGGTGGCTGGCGCGCGACGATGAAGTGGAGCGGGAGGATGACGTCGACG
GGGGCGACGGAGAGGAGGGGACGGGCAACCGGCCAGGGTGCTCCGAAGAC
CGAGGCTTTGTCCGTGTGGGTGTGCATTTCTTTGACGCCAACTTTGAAGC
TGAACGGCCCATCGTCGACGAACGCATTCGTCCTGCCCTGGCAGATCTTC
GCGTAATCCCTACTCAGCCCGGGAGTCTGCCTATTAAGTTGCCTTACTTT
GGTGCGCCGGCGGAGGAGGGTGAGGTTAATCCTGGGGGTATGGGTGCAGT
CGTGGGTTCTTCCGACACGACCCCGCAACAGGGAGAATCAAAAGGTGACG
AGACCCAGGAGGAAAAATCCTCAGGTGCTAAGAATGGGGACGAAACAGGT
TCATCGAATGGAAAAGCAGCTCGGGGCTCAAAGGCACTAGAGGGAGCCCT
GGTCCCGGAGCTCTTGAAAATGGTTGAGGGGAGTCGACTTGGTAAAGACA
AGATCACTGAATCGTTCCTAAGAGATCACCCAAAAGCGGCATCCAAGGCC
CAGGTCAGGACTCTTATCGAAAAAAGTGCCGACAAAGTGACAGGTGGTAA
AGGCACCACTGCTGGCAAAGCGTTTTGGGCAGTAAAGCAGGAGCTGATCG
ATCAATACCAGCTACAACGCTACCATCCTCCTTCTGCCCCAACCCCTCCG
GTGGACAAGACAACTGGCAGTAAGGCGAATGGTGTGGGCTGTAAGGGTGG
AGGAGCCAAAGCACCAAGAAAACGCAAGGCCAACCCGAGCGATATCCCGA
CTGGTACTGCACATGACTCCGCAGCAACCCCACCCACGGCAGTCTCGGAT
TCGGAATCGGTCCCGCTTGAGGGTGCACCTGTCTGTAGTGGACGTGATTC
CAAAGCGACGGCGCAGGGCAACGCAGAGGGGAATGCTTCGGGGTGCGACG
TGCTAAAAGACCATCCATGCAAGAGGGCTCGAAAGGCAGGAACGGGGGGC
GGTGGAAAGGATGCGCTCAAAGGCGTACCAGTACTCACGAAGTTTTTTGT
CAAGTCCGCTGAGGCTGGTTCGGGGCAAATGGTGCCAGAATCTAGCGAAG
TTTTACAGAGACTTTCGCCGCTTTCTCCGGCATGTACGGTCGAGATCGCC
TCTGAGAAAATACCAGGGGCAGTCAGAGCAGCAGCACCTGAGGAGAAGGA
AGACATGGCAACGGATGCAACATCGTGAGCGAAATGTCGATGGTGAGCCT
CAAACGAAGATTTCCCTGTATGGTCAACTTTAGGATGGTGTTCTGTCGTA
TACAGCGCAGAGAGTGTGTACGGAAACCCAGTGCAGCGTAAATCGTGGAC
TTTGAAAGATTCCCTCGATAGCTTTGAGTTGTATCGCTTAATGTTACGAC
AAAAACAAGTGCAAAATGGCGTGAAATATAAACGATATTATGTAATCAAT
ATTTCTATCATGTGA back to topCoding sequence (CDS) from alignment at CM002466.1:368018..370432- >rna5596 ID=rna5596|Name=rna5596|organism=Nannochloropsis gaditana|type=CDS|length=4668bp|location=Sequence derived from alignment at CM002466.1:368018..370432- (Nannochloropsis gaditana) CGCAGAGAGTGTGTACGGAAACCCAGTGCAGCGTAAATCGTGGACTTTGA AAGATTCCCTCGATAGCTTTGAGTTGTATCGCTTAATGTTACGACAAAAA CAAGTGCAAAATGGCGTGAAATATAAACGATATTATGTAATCAATATTTC TATCATGTGAATGGAGCTTGTGAAGCAACGCCAAGCTCTTGCCGAGAAGA AGCACGAGGAGAGGCAGAGGGCTGTGGCCGAAAAAGCCGAAAAAGCCCGT TCGCGCCAAGAGGAGAAGGCACGCAAGAAGGAGGAGCGGGAACAGAAGGA AAAGGAGCGGCAAGAGGAGAAGAGGCAGAAGGAAGAGGCTGCGGCCGCGG CGGCAGCGGCTGATGGAGACGACGGGGACGAAAGTGGGAAAAAAAAAAGT GTCACGGCGTTGGACGTGAAACAGCCTGCAATCTCCGCCTTCTTCAAGGC CAAAGCGCCCGCCCTGGACACAGCACAGAAGGTACACCCTGGTAGGCTTG TGAGCTTGTCGGGACCCTCCACTCTTCTTGGCGGCCTTCTGCCTGGAGAC GCGAAAGGGACTCCGGGCGCGAAAATGGGCGGCGAGACAGGGGAGGATGG CGGCGGCATCAGTGACGTGCAGATGGCTATTGCAGCCAAGGTGGAGATAA TGGATGCCATACTGAAGAAAGGTCCCATGGACCGAGAGGAACTCTTGAAA GACCTGCGATTGCGCGGCAAGACTGCGCTTTGCACACCGCGCAACCCGAA GCACAAAGCCCATCGGTTTCAGACGGTACATGTGACGGTGACGCACAGGG CCGCTGAGGGGGGCATGTGGGCACAGCCGGAATTCGCCGTGCTGGAGGAA AAGCGCCTGTGGAATGCAATGAAATTTCTCTCTTTTGCTGAGGACGTGCG CCCGCCTTACTATGGGACCTGGTCGCGACGCAGCCGAGAAGTCAGGCCTC GGCATTTCTGGGGAAAATCCAAGCTGCTCGATTACGACTACGATTCGGAG GAGGACTGGGAGGAAGGGGAGGAAGACGGTGACGGGGAGAACCTTTCTGT GACGGCCGAGAACGACCGGGAGGAGGACCAGGACCCTCACGACGGCTTGG ACTACACGGACGGGTGGCTGGCGCGCGACGATGAAGTGGAGCGGGAGGAT GACGTCGACGGGGGCGACGGAGAGGAGGGGACGGGCAACCGGCCAGGGTG CTCCGAAGACCGAGGCTTTGTCCGTGTGGGTGTGCATTTCTTTGACGCCA ACTTTGAAGCTGAACGGCCCATCGTCGACGAACGCATTCGTCCTGCCCTG GCAGATCTTCGCGTAATCCCTACTCAGCCCGGGAGTCTGCCTATTAAGTT GCCTTACTTTGGTGCGCCGGCGGAGGAGGGTGAGGTTAATCCTGGGGGTA TGGGTGCAGTCGTGGGTTCTTCCGACACGACCCCGCAACAGGGAGAATCA AAAGGTGACGAGACCCAGGAGGAAAAATCCTCAGGTGCTAAGAATGGGGA CGAAACAGGTTCATCGAATGGAAAAGCAGCTCGGGGCTCAAAGGCACTAG AGGGAGCCCTGGTCCCGGAGCTCTTGAAAATGGTTGAGGGGAGTCGACTT GGTAAAGACAAGATCACTGAATCGTTCCTAAGAGATCACCCAAAAGCGGC ATCCAAGGCCCAGGTCAGGACTCTTATCGAAAAAAGTGCCGACAAAGTGA CAGGTGGTAAAGGCACCACTGCTGGCAAAGCGTTTTGGGCAGTAAAGCAG GAGCTGATCGATCAATACCAGCTACAACGCTACCATCCTCCTTCTGCCCC AACCCCTCCGGTGGACAAGACAACTGGCAGTAAGGCGAATGGTGTGGGCT GTAAGGGTGGAGGAGCCAAAGCACCAAGAAAACGCAAGGCCAACCCGAGC GATATCCCGACTGGTACTGCACATGACTCCGCAGCAACCCCACCCACGGC AGTCTCGGATTCGGAATCGGTCCCGCTTGAGGGTGCACCTGTCTGTAGTG GACGTGATTCCAAAGCGACGGCGCAGGGCAACGCAGAGGGGAATGCTTCG GGGTGCGACGTGCTAAAAGACCATCCATGCAAGAGGGCTCGAAAGGCAGG AACGGGGGGCGGTGGAAAGGATGCGCTCAAAGGCGTACCAGTACTCACGA AGTTTTTTGTCAAGTCCGCTGAGGCTGGTTCGGGGCAAATGGTGCCAGAA TCTAGCGAAGTTTTACAGAGACTTTCGCCGCTTTCTCCGGCATGTACGGT CGAGATCGCCTCTGAGAAAATACCAGGGGCAGTCAGAGCAGCAGCACCTG AGGAGAAGGAAGACATGGCAACGGATGCAACATCCGCAGAGAGTGTGTAC GGAAACCCAGTGCAGCGTAAATCGTGGACTTTGAAAGATTCCCTCGATAG CTTTGAGTTGTATCGCTTAATGTTACGACAAAAACAAGTGCAAAATGGCG TGAAATATAAACGATATTATGTAATCAATATTTCTATCATGTGAATGGAG CTTGTGAAGCAACGCCAAGCTCTTGCCGAGAAGAAGCACGAGGAGAGGCA GAGGGCTGTGGCCGAAAAAGCCGAAAAAGCCCGTTCGCGCCAAGAGGAGA AGGCACGCAAGAAGGAGGAGCGGGAACAGAAGGAAAAGGAGCGGCAAGAG GAGAAGAGGCAGAAGGAAGAGGCTGCGGCCGCGGCGGCAGCGGCTGATGG AGACGACGGGGACGAAAGTGGGAAAAAAAAAAGTGTCACGGCGTTGGACG TGAAACAGCCTGCAATCTCCGCCTTCTTCAAGGCCAAAGCGCCCGCCCTG GACACAGCACAGAAGGTACACCCTGGTAGGCTTGTGAGCTTGTCGGGACC CTCCACTCTTCTTGGCGGCCTTCTGCCTGGAGACGCGAAAGGGACTCCGG GCGCGAAAATGGGCGGCGAGACAGGGGAGGATGGCGGCGGCATCAGTGAC GTGCAGATGGCTATTGCAGCCAAGGTGGAGATAATGGATGCCATACTGAA GAAAGGTCCCATGGACCGAGAGGAACTCTTGAAAGACCTGCGATTGCGCG GCAAGACTGCGCTTTGCACACCGCGCAACCCGAAGCACAAAGCCCATCGG TTTCAGACGGTACATGTGACGGTGACGCACAGGGCCGCTGAGGGGGGCAT GTGGGCACAGCCGGAATTCGCCGTGCTGGAGGAAAAGCGCCTGTGGAATG CAATGAAATTTCTCTCTTTTGCTGAGGACGTGCGCCCGCCTTACTATGGG ACCTGGTCGCGACGCAGCCGAGAAGTCAGGCCTCGGCATTTCTGGGGAAA ATCCAAGCTGCTCGATTACGACTACGATTCGGAGGAGGACTGGGAGGAAG GGGAGGAAGACGGTGACGGGGAGAACCTTTCTGTGACGGCCGAGAACGAC CGGGAGGAGGACCAGGACCCTCACGACGGCTTGGACTACACGGACGGGTG GCTGGCGCGCGACGATGAAGTGGAGCGGGAGGATGACGTCGACGGGGGCG ACGGAGAGGAGGGGACGGGCAACCGGCCAGGGTGCTCCGAAGACCGAGGC TTTGTCCGTGTGGGTGTGCATTTCTTTGACGCCAACTTTGAAGCTGAACG GCCCATCGTCGACGAACGCATTCGTCCTGCCCTGGCAGATCTTCGCGTAA TCCCTACTCAGCCCGGGAGTCTGCCTATTAAGTTGCCTTACTTTGGTGCG CCGGCGGAGGAGGGTGAGGTTAATCCTGGGGGTATGGGTGCAGTCGTGGG TTCTTCCGACACGACCCCGCAACAGGGAGAATCAAAAGGTGACGAGACCC AGGAGGAAAAATCCTCAGGTGCTAAGAATGGGGACGAAACAGGTTCATCG AATGGAAAAGCAGCTCGGGGCTCAAAGGCACTAGAGGGAGCCCTGGTCCC GGAGCTCTTGAAAATGGTTGAGGGGAGTCGACTTGGTAAAGACAAGATCA CTGAATCGTTCCTAAGAGATCACCCAAAAGCGGCATCCAAGGCCCAGGTC AGGACTCTTATCGAAAAAAGTGCCGACAAAGTGACAGGTGGTAAAGGCAC CACTGCTGGCAAAGCGTTTTGGGCAGTAAAGCAGGAGCTGATCGATCAAT ACCAGCTACAACGCTACCATCCTCCTTCTGCCCCAACCCCTCCGGTGGAC AAGACAACTGGCAGTAAGGCGAATGGTGTGGGCTGTAAGGGTGGAGGAGC CAAAGCACCAAGAAAACGCAAGGCCAACCCGAGCGATATCCCGACTGGTA CTGCACATGACTCCGCAGCAACCCCACCCACGGCAGTCTCGGATTCGGAA TCGGTCCCGCTTGAGGGTGCACCTGTCTGTAGTGGACGTGATTCCAAAGC GACGGCGCAGGGCAACGCAGAGGGGAATGCTTCGGGGTGCGACGTGCTAA AAGACCATCCATGCAAGAGGGCTCGAAAGGCAGGAACGGGGGGCGGTGGA AAGGATGCGCTCAAAGGCGTACCAGTACTCACGAAGTTTTTTGTCAAGTC CGCTGAGGCTGGTTCGGGGCAAATGGTGCCAGAATCTAGCGAAGTTTTAC AGAGACTTTCGCCGCTTTCTCCGGCATGTACGGTCGAGATCGCCTCTGAG AAAATACCAGGGGCAGTCAGAGCAGCAGCACCTGAGGAGAAGGAAGACAT GGCAACGGATGCAACATC back to top
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