EWM25132.1, cds5582 (CDS) Nannochloropsis gaditana

Overview
NameEWM25132.1
Unique Namecds5582
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:368259..370432 -
Alignment locationCM002466.1:368018..368177 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25132.1
ProductChromatin assembly factor 1 subunit A
Orig transcript idgnl|cribi|Naga_100016g8.2941.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:368259..370432 -
CM002466.1supercontigCM002466.1:368018..368177 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR022043CAF1A
Homology
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|585106770|gb|EWM25132.1| (Chromatin assembly factor 1 subunit A [Nannochloropsis gaditana])

HSP 1 Score: 1582.39 bits (4096), Expect = 0.000e+0
Identity = 777/777 (100.00%), Postives = 777/777 (100.00%), Query Frame = 0
Query:    1 MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM 777
            MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM
Sbjct:    1 MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM 777          
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|298713220|emb|CBJ33518.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.3597 bits (233), Expect = 5.509e-16
Identity = 109/389 (28.02%), Postives = 155/389 (39.85%), Query Frame = 0
Query:  202 RFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSK--LLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDY--------TDGWLARDDEVERE--DDVDGGDGEEGTGNRPGCSEDR----GFVRVGVH----------------------------FFDANFEAERPIVDE--RIRPALADLR----VIPTQPGS-LPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQ 539
            R + + VTVT     GG + +P ++  ++  + N MK L F +D RPPY+GTWS+ S +V  R   G+     L+YDYDSEEDWEE   +  GE+L        +E+ +P D LDY         DGWL +DDE   E  D  D G       N    + +     GFV  GV                             F  A     RPI DE  R RPAL  L     V P   G+    + P F     E  V           SDT    G   G      K  G               R  K +   L+P L++ + G    ++ +  +F+ +HP+   K    ++ +K  D  T  +    G  F  V  E+I++  ++
Sbjct:  791 RAKKIKVTVTVAGGRGG-FGEPSYSETKQVEVRNRMKLLQFHQDHRPPYWGTWSKSSSQVTGRRPLGRDTKGTLNYDYDSEEDWEE---EAQGEDLL------SDEEVEPEDNLDYKARNQAAVVDGWLRQDDEFSDEEIDRFDSGKSNNNANNNANNNNNNRKALGFVGEGVTIGAGAAAAAAGGSASNGQQQQQQQQQPAFVSAIMFRRRPISDEEARARPALRALSGYRAVTPFSGGNGRRPRSPAFPVSVVEAMVEKAR------RSDTGEGGGAGAGAGAGLGKEEGK-------------VRKVKDVPDELLPMLVEKLHGKADKREDVVNAFVAEHPQCTKK----SVHQKVKDVATRERSLHGGTVF-VVNPEVIERLGVE 1145          
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|675376907|gb|KFM69809.1| (Chromatin assembly factor 1 subunit A, partial [Stegodyphus mimosarum])

HSP 1 Score: 88.9669 bits (219), Expect = 1.811e-14
Identity = 72/262 (27.48%), Postives = 121/262 (46.18%), Query Frame = 0
Query:  229 EEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVT-AENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESF 489
            EE  L    K L F+E+VRPPY+GTW ++S+ VRPRH +G+   LDY  DS+E+W+EG   G GE+LS T AE++ E+D +  +      G+L+ ++E E        DGE    N P   + +  +++ +      FE ER      ++P +     I  +       +  F  P            AV+ S    P     K  E + ++ S A   + +  +   +    K +    +P L+++V G+   +  + + F
Sbjct:  528 EEAHLTMTAKLLQFSENVRPPYWGTWRKKSKNVRPRHPFGEDSSLDYTVDSDEEWDEG---GPGESLSGTEAEDESEDDYEVDNDFFVPHGYLSAEEEKE-------DDGE--VVNDP--EKQKALLKIKLQ----EFEMERKKKTTELKPIILGC-FIENKSDGQESSICKFLEP----------YAAVIISDTPIPTTFSIKHSEAELKQQSNA--SERSSPTTFSSVSSKKNVPEEAMPHLIRLVHGNTKKRSTLVQEF 758          
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|219124745|ref|XP_002182657.1| (chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406003|gb|EEC45944.1| chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.4925 bits (197), Expect = 9.724e-12
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:  197 KHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRH-FWGKSKLLDYDYDSEEDWEEGEEDGDGENL 295
            +H+  +   + V VT     G   AQP FA  +   + N  KFL F EDVRPPY+GTWS+R   V  +  F  ++ LL+YDYDSE +WEEG +D  GE+L
Sbjct:  919 RHRRTKMVNMEVFVTVVPENGAFGAQP-FAEQQTITVPNKYKFLRFHEDVRPPYFGTWSKRGSIVTGKTPFRKETTLLEYDYDSEAEWEEG-DDEIGEDL 1016          
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|752354367|gb|KIO13413.1| (hypothetical protein M404DRAFT_576318 [Pisolithus tinctorius Marx 270])

HSP 1 Score: 65.0846 bits (157), Expect = 3.769e-7
Identity = 92/322 (28.57%), Postives = 141/322 (43.79%), Query Frame = 0
Query:   30 RSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDT-AQKVHPGRLVSLSGPSTLLGGLLPGDAKGT-PGAKMGGETGEDGGGISDVQMA--IAAKVEIMD-AILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVT----VTHRAAEGGMWAQPE-----FAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLL-DYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGD 336
            R+   E+A K +E+E+++  R E++R+++EA   + +   +     GK K+ T      PA  +F  A   A++   Q+     ++            L  ++KGT PGAK  G T +D   I D   A    A   + D       P + +++LK  R R        R+ +     F+T +      +  +  E  +   P        +L +++L  A K L F ED RP YYGTW+R SR V PR  + K  L  DY YDS E+W    ED D        ++  E+D D  +     D WL  D+EVE     D  D
Sbjct:  260 RALDPEQAAKDKEKEERKAARVEKERKQKEAQDKSRSILAN---FFGKAKASTQ---DSPAKDSFAAANPLAIENDFQRTFKPFVLKKDAECAPHNWFL--ESKGTRPGAKGRGITHDDAIVIDDTDAASDTHAHAPLSDEPAAHSEPAELQDILKLFRRRSLM-----RSARRSMSSFKTSNPRTVRDIMAQLGEAEIAGDPSQVRHLLKILSDRKLLPA-KVLIFNEDARPGYYGTWTRNSRIVGPRAPFAKDFLARDYGYDSGEEW----EDEDPAQADDVVDDGEEDDADGDEPDSDLDSWLVDDEEVETPSIPDSRD 563          
The following BLAST results are available for this feature:
BLAST of EWM25132.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585106770|gb|EWM25132.1|0.000e+0100.00Chromatin assembly factor 1 subunit A [Nannochloro... [more]
gi|298713220|emb|CBJ33518.1|5.509e-1628.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|675376907|gb|KFM69809.1|1.811e-1427.48Chromatin assembly factor 1 subunit A, partial [St... [more]
gi|219124745|ref|XP_002182657.1|9.724e-1245.00chromatin assembly factor subunit [Phaeodactylum t... [more]
gi|752354367|gb|KIO13413.1|3.769e-728.57hypothetical protein M404DRAFT_576318 [Pisolithus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5596rna5596Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications