EWM25132.1, cds5582 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|585106770|gb|EWM25132.1| (Chromatin assembly factor 1 subunit A [Nannochloropsis gaditana]) HSP 1 Score: 1582.39 bits (4096), Expect = 0.000e+0 Identity = 777/777 (100.00%), Postives = 777/777 (100.00%), Query Frame = 0 Query: 1 MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM 777 MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM Sbjct: 1 MELVKQRQALAEKKHEERQRAVAEKAEKARSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAIAAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGGAKAPRKRKANPSDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLSPLSPACTVEIASEKIPGAVRAAAPEEKEDMATDATSAESVYGNPVQRKSWTLKDSLDSFELYRLMLRQKQVQNGVKYKRYYVINISIM 777
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|298713220|emb|CBJ33518.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.3597 bits (233), Expect = 5.509e-16 Identity = 109/389 (28.02%), Postives = 155/389 (39.85%), Query Frame = 0 Query: 202 RFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSK--LLDYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDY--------TDGWLARDDEVERE--DDVDGGDGEEGTGNRPGCSEDR----GFVRVGVH----------------------------FFDANFEAERPIVDE--RIRPALADLR----VIPTQPGS-LPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQ 539 R + + VTVT GG + +P ++ ++ + N MK L F +D RPPY+GTWS+ S +V R G+ L+YDYDSEEDWEE + GE+L +E+ +P D LDY DGWL +DDE E D D G N + + GFV GV F A RPI DE R RPAL L V P G+ + P F E V SDT G G K G R K + L+P L++ + G ++ + +F+ +HP+ K ++ +K D T + G F V E+I++ ++ Sbjct: 791 RAKKIKVTVTVAGGRGG-FGEPSYSETKQVEVRNRMKLLQFHQDHRPPYWGTWSKSSSQVTGRRPLGRDTKGTLNYDYDSEEDWEE---EAQGEDLL------SDEEVEPEDNLDYKARNQAAVVDGWLRQDDEFSDEEIDRFDSGKSNNNANNNANNNNNNRKALGFVGEGVTIGAGAAAAAAGGSASNGQQQQQQQQQPAFVSAIMFRRRPISDEEARARPALRALSGYRAVTPFSGGNGRRPRSPAFPVSVVEAMVEKAR------RSDTGEGGGAGAGAGAGLGKEEGK-------------VRKVKDVPDELLPMLVEKLHGKADKREDVVNAFVAEHPQCTKK----SVHQKVKDVATRERSLHGGTVF-VVNPEVIERLGVE 1145
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|675376907|gb|KFM69809.1| (Chromatin assembly factor 1 subunit A, partial [Stegodyphus mimosarum]) HSP 1 Score: 88.9669 bits (219), Expect = 1.811e-14 Identity = 72/262 (27.48%), Postives = 121/262 (46.18%), Query Frame = 0 Query: 229 EEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDYDYDSEEDWEEGEEDGDGENLSVT-AENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGDGEEGTGNRPGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEGEVNPGGMGAVVGSSDTTPQQGESKGDETQEEKSSGAKNGDETGSSNGKAARGSKALEGALVPELLKMVEGSRLGKDKITESF 489 EE L K L F+E+VRPPY+GTW ++S+ VRPRH +G+ LDY DS+E+W+EG G GE+LS T AE++ E+D + + G+L+ ++E E DGE N P + + +++ + FE ER ++P + I + + F P AV+ S P K E + ++ S A + + + + K + +P L+++V G+ + + + F Sbjct: 528 EEAHLTMTAKLLQFSENVRPPYWGTWRKKSKNVRPRHPFGEDSSLDYTVDSDEEWDEG---GPGESLSGTEAEDESEDDYEVDNDFFVPHGYLSAEEEKE-------DDGE--VVNDP--EKQKALLKIKLQ----EFEMERKKKTTELKPIILGC-FIENKSDGQESSICKFLEP----------YAAVIISDTPIPTTFSIKHSEAELKQQSNA--SERSSPTTFSSVSSKKNVPEEAMPHLIRLVHGNTKKRSTLVQEF 758
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|219124745|ref|XP_002182657.1| (chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406003|gb|EEC45944.1| chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 80.4925 bits (197), Expect = 9.724e-12 Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 0 Query: 197 KHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRH-FWGKSKLLDYDYDSEEDWEEGEEDGDGENL 295 +H+ + + V VT G AQP FA + + N KFL F EDVRPPY+GTWS+R V + F ++ LL+YDYDSE +WEEG +D GE+L Sbjct: 919 RHRRTKMVNMEVFVTVVPENGAFGAQP-FAEQQTITVPNKYKFLRFHEDVRPPYFGTWSKRGSIVTGKTPFRKETTLLEYDYDSEAEWEEG-DDEIGEDL 1016
BLAST of EWM25132.1 vs. NCBI_GenBank
Match: gi|752354367|gb|KIO13413.1| (hypothetical protein M404DRAFT_576318 [Pisolithus tinctorius Marx 270]) HSP 1 Score: 65.0846 bits (157), Expect = 3.769e-7 Identity = 92/322 (28.57%), Postives = 141/322 (43.79%), Query Frame = 0 Query: 30 RSRQEEKARKKEEREQKEKERQEEKRQKEEAAAAAAAADGDDGDESGKKKSVTALDVKQPAISAFFKAKAPALDT-AQKVHPGRLVSLSGPSTLLGGLLPGDAKGT-PGAKMGGETGEDGGGISDVQMA--IAAKVEIMD-AILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVT----VTHRAAEGGMWAQPE-----FAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLL-DYDYDSEEDWEEGEEDGDGENLSVTAENDREEDQDPHDGLDYTDGWLARDDEVEREDDVDGGD 336 R+ E+A K +E+E+++ R E++R+++EA + + + GK K+ T PA +F A A++ Q+ ++ L ++KGT PGAK G T +D I D A A + D P + +++LK R R R+ + F+T + + + E + P +L +++L A K L F ED RP YYGTW+R SR V PR + K L DY YDS E+W ED D ++ E+D D + D WL D+EVE D D Sbjct: 260 RALDPEQAAKDKEKEERKAARVEKERKQKEAQDKSRSILAN---FFGKAKASTQ---DSPAKDSFAAANPLAIENDFQRTFKPFVLKKDAECAPHNWFL--ESKGTRPGAKGRGITHDDAIVIDDTDAASDTHAHAPLSDEPAAHSEPAELQDILKLFRRRSLM-----RSARRSMSSFKTSNPRTVRDIMAQLGEAEIAGDPSQVRHLLKILSDRKLLPA-KVLIFNEDARPGYYGTWTRNSRIVGPRAPFAKDFLARDYGYDSGEEW----EDEDPAQADDVVDDGEEDDADGDEPDSDLDSWLVDDEEVETPSIPDSRD 563 The following BLAST results are available for this feature:
BLAST of EWM25132.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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