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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100016g9.2904.mrna |
| Orig protein id | gnl|cribi|Naga_100016g9.2904 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:364860..367471 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5595 ID=rna5595|Name=rna5595|organism=Nannochloropsis gaditana|type=mRNA|length=1382bp
ATCTTGTTAATAGGGTGCCGTGAGATACGAGAGCTTGATGGTCAGGTTTC
CATTTTGAGGGCTGACTTCTTGCTTTGTGGCGTCTTGACTTCTCCCTCAT
GCCTTCCCCTCTACTGCATCCGCCTTTGTTATAACCACGACTAACTCATA
CCTATCTGATCACCATAATACTTTAGGCATCTATAGCATGGATGAAGGCC
CTGAGGACGAGGCAAGGCGGACTGGCGCCGATGATAGCGCCCTGGCCACG
GTTCCGGAGAGTTCCGGCACGCTGGCAATAAGCAGTGCTCCCCCAGCCCC
AGGACGGACGTCGCACTTGGCCGCATCTACCATGCTTTTGACCGGTCATG
CTGCAGCCGTGTATTGTCTGCAGTTCAATCCCATGGGGGACGCTTTGGCA
ACGGGGTCTTTTGATAAAACAATATTGCTGTGGGACGTATATGAGGATTG
TAAAAATTACAATGTACTGGCTGGGCATACGAACGCTGTGTTGGATCTGA
AATGGTCGCCAAATGGTAGCCAAATCGCTTCGGCATCGGCCGATAAGACG
CTCATGTTATGGGACAGCAACAAGGGCACTCGGATCCGTAAATGCAAGGA
GCACACTGGATGCGTAAACAGTGTGGCCGTGGCGGGCGACAAAGTCGCGG
CGTTGATAGCCACGGCAAGCGACGATCGCACTGTGAAGCTGTGGGACAAC
CGCAGCCGGCGATCGGTTCAAACAATCGAGCATCGCTTTCAGTTGCTGGC
GGTAGCGCTGTCCGCGGATGGGAAAAAGGTGTTCGCGGGCGGCATCGACA
ACAGCATCCAGGTCTGGGACATGGCCAAGGGACCGGCTCCTCTAGACGTG
CTCGAGGGCCACTCGGAGACGGTCACGGGCTTGAGCCTGAGTCCCGACGG
CAAGTATTTGCTGTCGAACGCCATGGACAACACCGTGCGGCAGTGGGACG
TGCGGCCCTTTGTGACGGGAGGGCGGCTGGTCCAGGTCTTCCAAGGAGGG
ACACACGGCTCGGATCGCAACCTCTTGCGCTGCGCCTGGTCGCAAGACGG
CGAGATGGTCTCTGCGGGCTCCGCAGATCGCGCGGTTCATGTATGGGATG
TGCCTTCGGGTCAGGAGCTCTACTACCTGCCGGGACATAAAGGGACCGTA
AATGAGGTCGTCTTCCATCCCCGGGAGCCTGTGATAGCCTCTGCGTCTTC
GGACAAAACGTGCTATTTGGGGGAGCTTGCCGGATGATAACTCTTATCGT
TAATCATCGTGGAAGATAAAAACTGAGAATTTGAGTATTAGGCGACGGTT
CCATGCTCTTTCTGTGTTTCATTTTAAGTAGAGTAGAACAGCAACAGCAA
TGTAATTGCTCTGTTTGTACAGCACGGGCATT back to topprotein sequence of rna5595 >rna5595-protein ID=rna5595-protein|Name=rna5595|organism=Nannochloropsis gaditana|type=polypeptide|length=799bp
MSEILMAKLREGKPPKNAKILNILREQVHQLGQDTETISHSLDFAQALAE
LLPRLRDTDNDSRKLARLVYFFITEICAHHARTCDAAIFLEAVLADFRSA
TYFPRQVVAVQSLGLLSSQYYHHHRSKDELRREEVYLETLSLVQKSCSDL
QRLPPSLEKLGGEIVGSGKKTKEFAEILALSGALSLMMRHVLKHFDCCPP
EWMAYMYTVCHAPGSLRANDDGTRACHAALWELALKSKSARAEMAIHLLS
NKKIHSSSALSDILACVFYLRTCACIASSTGQDVPPATTEAFFQVLKDAA
LKDKRLQVSLEAINLLYQFSWHEFGTLSSTRASDVPAIAKVLQHAVEEPA
AQLTTLHAVFGAMRTMAKWLVRYQYEGEKGDEFTLIAQADIGEEDAGYMH
AGVLKRLRNTITSRADALESSKTLSTQLRLSLLQTLIWLVPSLPRASFPS
NASNRYNSRISFSALSLSQPGGEPVLSSLTSLSTSDESQLWQDLERRLAE
APAYFTDVQLGLLLEEGRDRMSVEAVSSSSGPSSRILASLLSRTSRIYFN
VAPTDAMAEYLIKTWEGLLSPRPSDPVIQAELLAAIFCVLDLDFCPKPAS
GNTHIYFKAGIRPQAVWQTQGQVQEPSCTQKRAIYARLLRLASWFLGEHA
LRFTTEQLGVIVLRLKTLSLFSDCFTQYEAVQALCKVAVCCEQADIQVEL
YEFLRDFTCADLKSPLTGINEVGMSTFGEAHENEDQAQKLSFGVGNGFGS
QEDCVAATLEHLRGVFRDHLKSLGLDPPGDPSQSSIVGVSLFVVQNAKE back to topmRNA from alignment at CM002466.1:364860..367471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5595 ID=rna5595|Name=rna5595|organism=Nannochloropsis gaditana|type=mRNA|length=2612bp|location=Sequence derived from alignment at CM002466.1:364860..367471- (Nannochloropsis gaditana)
ATGAGCGAAATATTGATGGCAAAGCTCCGCGAGGGCAAACCTCCTAAGAA
CGCTAAGATATTAAACATCCTCCGTGAGCAAGTGCATCAACTTGGCCAAG
ACACAGAAACTATATCACACAGTCTAGACTTTGCCCAAGCATTGGCTGAG
CTATTGCCACGACTTCGAGACACGGACAACGACAGCAGGAAACTCGCTCG
CTTGGTATATTTTTTTATTACCGAGATATGCGCACATCATGCAAGGACAT
GCGACGCAGCGATCTTTCTGGAAGCAGTTCTTGCAGATTTTCGGTCCGCT
ACTTATTTTCCGAGACAAGTGGTTGCGGTACAGTCTCTTGGTCTCCTGTC
CTCGCAGTACTACCATCATCATCGTTCAAAAGATGAGCTTCGGAGGGAGG
AAGTTTACCTAGAAACTCTCTCGCTTGTGCAAAAATCTTGCTCAGATTTG
CAACGTCTACCTCCTTCTTTGGAGAAGCTTGGTGGCGAGATTGTTGGGAG
CGGTAAGAAGACCAAGGAGTTTGCCGAGATCCTAGCGCTGTCGGGTGCGC
TATCGCTGATGATGCGACATGTACTGAAGCACTTCGATTGTTGTCCACCG
GAATGGATGGCATACATGTACACGGTATGTCACGCTCCTGGAAGCTTGAG
AGCAAATGATGACGGGACTCGTGCATGCCATGCCGCGTTATGGGAGCTGG
CGCTCAAATCAAAAAGCGCAAGAGCTGAGATGGCCATTCATTTGCTCTCC
AACAAGAAAATTCAGTACGTACACCACTCAGGGCTGAACTACATGGTTTT
TGACTTACGACTGAAGTTATGGGGCGCAGCATAACACTTGTTAATCGTTG
ACGCGTGATTCACTTTCCACTTGATGCTCACATTGTCGTTTGTAACTCTG
TGTGTCGAGTGTTTCCAGGGCATACACATTCAACAATCTACCTTCAACCA
CGACCGTACCCTTAACATCACCATAGTTCATCTAGCGCATTGTCAGATAT
CTTGGCGTGCGTCTTCTACCTTCGCACTTGTGCTTGCATCGCCTCTTCAA
CCGGACAAGATGTACCACCTGCTACGACCGAGGCTTTCTTTCAAGTACTT
AAAGACGCGGCGCTAAAGGACAAGCGCCTGCAAGTCAGCCTGGAGGCTAT
CAACCTTTTATACCAGTTTTCGTGGCATGAGTTCGGGACGCTTTCCTCCA
CGCGGGCCTCGGACGTCCCTGCCATCGCGAAGGTCTTGCAGCACGCGGTT
GAAGAACCGGCAGCGCAACTCACGACACTCCATGCCGTTTTCGGAGCGAT
GCGTACGATGGCCAAATGGCTTGTTCGGTACCAGTATGAAGGGGAAAAGG
GTGATGAGTTCACCCTGATCGCTCAAGCCGATATAGGGGAAGAAGATGCC
GGCTACATGCATGCCGGCGTCTTGAAGAGGCTGAGAAACACTATCACGAG
CAGGGCGGATGCACTCGAGTCTTCAAAAACACTCTCAACACAGCTACGTC
TGTCCTTATTACAAACTCTGATTTGGCTCGTACCATCGCTACCTCGAGCC
TCGTTTCCCAGCAATGCTAGCAACAGGTACAACAGCAGAATTTCGTTTTC
AGCTCTCTCCCTATCGCAGCCTGGAGGGGAGCCTGTGCTCTCTAGCTTAA
CGTCCTTGAGCACCTCCGATGAGAGCCAGTTGTGGCAAGACTTGGAAAGA
CGCCTAGCTGAAGCGCCTGCGTACTTCACAGACGTCCAGCTCGGACTCCT
CCTTGAGGAGGGACGAGACCGTATGAGCGTGGAAGCCGTCTCTTCCTCGT
CGGGCCCTTCCAGCCGAATCTTGGCCTCCTTGCTCTCTCGCACTTCACGC
ATATATTTCAATGTTGCCCCTACGGATGCAATGGCTGAATATCTCATCAA
GACCTGGGAAGGCCTTCTGTCTCCCAGGCCCTCCGATCCCGTCATTCAAG
CGGAGCTTCTGGCCGCAATATTTTGTGTGCTGGACCTCGATTTCTGTCCT
AAACCGGCGAGCGGCAACACCCACATTTATTTCAAAGCTGGTATTCGTCC
TCAGGCGGTTTGGCAGACCCAAGGGCAGGTTCAGGAGCCGAGTTGTACCC
AAAAGCGTGCCATCTACGCTCGACTCTTGCGCCTAGCGTCCTGGTTCCTC
GGCGAGCACGCGTTGCGGTTCACAACCGAGCAGCTAGGCGTGATAGTACT
CCGGTTGAAGACACTGAGTCTCTTTTCAGATTGCTTCACCCAGTATGAAG
CTGTTCAGGCTTTGTGCAAAGTGGCAGTTTGTTGCGAACAGGCAGACATC
CAGGTCGAGCTCTATGAATTCCTGCGTGACTTCACTTGCGCCGACCTCAA
GTCCCCTTTGACCGGCATCAACGAAGTGGGCATGTCAACGTTTGGAGAGG
CGCATGAGAATGAAGACCAGGCGCAAAAGCTGTCGTTTGGGGTCGGTAAC
GGGTTCGGATCGCAGGAAGATTGTGTTGCGGCGACTCTGGAGCATCTCCG
CGGTGTATTCCGCGATCATCTCAAGTCCCTGGGACTTGACCCCCCAGGAG
ATCCTTCTCAATCCTCCATTGTGGGTGTTTCGCTCTTTGTCGTTCAAAAT
GCGAAAGAGTGA back to topCoding sequence (CDS) from alignment at CM002466.1:364860..367471- >rna5595 ID=rna5595|Name=rna5595|organism=Nannochloropsis gaditana|type=CDS|length=4800bp|location=Sequence derived from alignment at CM002466.1:364860..367471- (Nannochloropsis gaditana)
TTCATCTAGCGCATTGTCAGATATCTTGGCGTGCGTCTTCTACCTTCGCA
CTTGTGCTTGCATCGCCTCTTCAACCGGACAAGATGTACCACCTGCTACG
ACCGAGGCTTTCTTTCAAGTACTTAAAGACGCGGCGCTAAAGGACAAGCG
CCTGCAAGTCAGCCTGGAGGCTATCAACCTTTTATACCAGTTTTCGTGGC
ATGAGTTCGGGACGCTTTCCTCCACGCGGGCCTCGGACGTCCCTGCCATC
GCGAAGGTCTTGCAGCACGCGGTTGAAGAACCGGCAGCGCAACTCACGAC
ACTCCATGCCGTTTTCGGAGCGATGCGTACGATGGCCAAATGGCTTGTTC
GGTACCAGTATGAAGGGGAAAAGGGTGATGAGTTCACCCTGATCGCTCAA
GCCGATATAGGGGAAGAAGATGCCGGCTACATGCATGCCGGCGTCTTGAA
GAGGCTGAGAAACACTATCACGAGCAGGGCGGATGCACTCGAGTCTTCAA
AAACACTCTCAACACAGCTACGTCTGTCCTTATTACAAACTCTGATTTGG
CTCGTACCATCGCTACCTCGAGCCTCGTTTCCCAGCAATGCTAGCAACAG
GTACAACAGCAGAATTTCGTTTTCAGCTCTCTCCCTATCGCAGCCTGGAG
GGGAGCCTGTGCTCTCTAGCTTAACGTCCTTGAGCACCTCCGATGAGAGC
CAGTTGTGGCAAGACTTGGAAAGACGCCTAGCTGAAGCGCCTGCGTACTT
CACAGACGTCCAGCTCGGACTCCTCCTTGAGGAGGGACGAGACCGTATGA
GCGTGGAAGCCGTCTCTTCCTCGTCGGGCCCTTCCAGCCGAATCTTGGCC
TCCTTGCTCTCTCGCACTTCACGCATATATTTCAATGTTGCCCCTACGGA
TGCAATGGCTGAATATCTCATCAAGACCTGGGAAGGCCTTCTGTCTCCCA
GGCCCTCCGATCCCGTCATTCAAGCGGAGCTTCTGGCCGCAATATTTTGT
GTGCTGGACCTCGATTTCTGTCCTAAACCGGCGAGCGGCAACACCCACAT
TTATTTCAAAGCTGGTATTCGTCCTCAGGCGGTTTGGCAGACCCAAGGGC
AGGTTCAGGAGCCGAGTTGTACCCAAAAGCGTGCCATCTACGCTCGACTC
TTGCGCCTAGCGTCCTGGTTCCTCGGCGAGCACGCGTTGCGGTTCACAAC
CGAGCAGCTAGGCGTGATAGTACTCCGGTTGAAGACACTGAGTCTCTTTT
CAGATTGCTTCACCCAGTATGAAGCTGTTCAGGCTTTGTGCAAAGTGGCA
GTTTGTTGCGAACAGGCAGACATCCAGGTCGAGCTCTATGAATTCCTGCG
TGACTTCACTTGCGCCGACCTCAAGTCCCCTTTGACCGGCATCAACGAAG
TGGGCATGTCAACGTTTGGAGAGGCGCATGAGAATGAAGACCAGGCGCAA
AAGCTGTCGTTTGGGGTCGGTAACGGGTTCGGATCGCAGGAAGATTGTGT
TGCGGCGACTCTGGAGCATCTCCGCGGTGTATTCCGCGATCATCTCAAGT
CCCTGGGACTTGACCCCCCAGGAGATCCTTCTCAATCCTCCATTGTGGGT
GTTTCGCTCTTTGTCGTTCAAAATGCGAAAGAGTGAATGAGCGAAATATT
GATGGCAAAGCTCCGCGAGGGCAAACCTCCTAAGAACGCTAAGATATTAA
ACATCCTCCGTGAGCAAGTGCATCAACTTGGCCAAGACACAGAAACTATA
TCACACAGTCTAGACTTTGCCCAAGCATTGGCTGAGCTATTGCCACGACT
TCGAGACACGGACAACGACAGCAGGAAACTCGCTCGCTTGGTATATTTTT
TTATTACCGAGATATGCGCACATCATGCAAGGACATGCGACGCAGCGATC
TTTCTGGAAGCAGTTCTTGCAGATTTTCGGTCCGCTACTTATTTTCCGAG
ACAAGTGGTTGCGGTACAGTCTCTTGGTCTCCTGTCCTCGCAGTACTACC
ATCATCATCGTTCAAAAGATGAGCTTCGGAGGGAGGAAGTTTACCTAGAA
ACTCTCTCGCTTGTGCAAAAATCTTGCTCAGATTTGCAACGTCTACCTCC
TTCTTTGGAGAAGCTTGGTGGCGAGATTGTTGGGAGCGGTAAGAAGACCA
AGGAGTTTGCCGAGATCCTAGCGCTGTCGGGTGCGCTATCGCTGATGATG
CGACATGTACTGAAGCACTTCGATTGTTGTCCACCGGAATGGATGGCATA
CATGTACACGGTATGTCACGCTCCTGGAAGCTTGAGAGCAAATGATGACG
GGACTCGTGCATGCCATGCCGCGTTATGGGAGCTGGCGCTCAAATCAAAA
AGCGCAAGAGCTGAGATGGCCATTCATTTGCTCTCCAACAAGAAAATTCA
TTCATCTAGCGCATTGTCAGATATCTTGGCGTGCGTCTTCTACCTTCGCA
CTTGTGCTTGCATCGCCTCTTCAACCGGACAAGATGTACCACCTGCTACG
ACCGAGGCTTTCTTTCAAGTACTTAAAGACGCGGCGCTAAAGGACAAGCG
CCTGCAAGTCAGCCTGGAGGCTATCAACCTTTTATACCAGTTTTCGTGGC
ATGAGTTCGGGACGCTTTCCTCCACGCGGGCCTCGGACGTCCCTGCCATC
GCGAAGGTCTTGCAGCACGCGGTTGAAGAACCGGCAGCGCAACTCACGAC
ACTCCATGCCGTTTTCGGAGCGATGCGTACGATGGCCAAATGGCTTGTTC
GGTACCAGTATGAAGGGGAAAAGGGTGATGAGTTCACCCTGATCGCTCAA
GCCGATATAGGGGAAGAAGATGCCGGCTACATGCATGCCGGCGTCTTGAA
GAGGCTGAGAAACACTATCACGAGCAGGGCGGATGCACTCGAGTCTTCAA
AAACACTCTCAACACAGCTACGTCTGTCCTTATTACAAACTCTGATTTGG
CTCGTACCATCGCTACCTCGAGCCTCGTTTCCCAGCAATGCTAGCAACAG
GTACAACAGCAGAATTTCGTTTTCAGCTCTCTCCCTATCGCAGCCTGGAG
GGGAGCCTGTGCTCTCTAGCTTAACGTCCTTGAGCACCTCCGATGAGAGC
CAGTTGTGGCAAGACTTGGAAAGACGCCTAGCTGAAGCGCCTGCGTACTT
CACAGACGTCCAGCTCGGACTCCTCCTTGAGGAGGGACGAGACCGTATGA
GCGTGGAAGCCGTCTCTTCCTCGTCGGGCCCTTCCAGCCGAATCTTGGCC
TCCTTGCTCTCTCGCACTTCACGCATATATTTCAATGTTGCCCCTACGGA
TGCAATGGCTGAATATCTCATCAAGACCTGGGAAGGCCTTCTGTCTCCCA
GGCCCTCCGATCCCGTCATTCAAGCGGAGCTTCTGGCCGCAATATTTTGT
GTGCTGGACCTCGATTTCTGTCCTAAACCGGCGAGCGGCAACACCCACAT
TTATTTCAAAGCTGGTATTCGTCCTCAGGCGGTTTGGCAGACCCAAGGGC
AGGTTCAGGAGCCGAGTTGTACCCAAAAGCGTGCCATCTACGCTCGACTC
TTGCGCCTAGCGTCCTGGTTCCTCGGCGAGCACGCGTTGCGGTTCACAAC
CGAGCAGCTAGGCGTGATAGTACTCCGGTTGAAGACACTGAGTCTCTTTT
CAGATTGCTTCACCCAGTATGAAGCTGTTCAGGCTTTGTGCAAAGTGGCA
GTTTGTTGCGAACAGGCAGACATCCAGGTCGAGCTCTATGAATTCCTGCG
TGACTTCACTTGCGCCGACCTCAAGTCCCCTTTGACCGGCATCAACGAAG
TGGGCATGTCAACGTTTGGAGAGGCGCATGAGAATGAAGACCAGGCGCAA
AAGCTGTCGTTTGGGGTCGGTAACGGGTTCGGATCGCAGGAAGATTGTGT
TGCGGCGACTCTGGAGCATCTCCGCGGTGTATTCCGCGATCATCTCAAGT
CCCTGGGACTTGACCCCCCAGGAGATCCTTCTCAATCCTCCATTGTGGGT
GTTTCGCTCTTTGTCGTTCAAAATGCGAAAGAGTGAATGAGCGAAATATT
GATGGCAAAGCTCCGCGAGGGCAAACCTCCTAAGAACGCTAAGATATTAA
ACATCCTCCGTGAGCAAGTGCATCAACTTGGCCAAGACACAGAAACTATA
TCACACAGTCTAGACTTTGCCCAAGCATTGGCTGAGCTATTGCCACGACT
TCGAGACACGGACAACGACAGCAGGAAACTCGCTCGCTTGGTATATTTTT
TTATTACCGAGATATGCGCACATCATGCAAGGACATGCGACGCAGCGATC
TTTCTGGAAGCAGTTCTTGCAGATTTTCGGTCCGCTACTTATTTTCCGAG
ACAAGTGGTTGCGGTACAGTCTCTTGGTCTCCTGTCCTCGCAGTACTACC
ATCATCATCGTTCAAAAGATGAGCTTCGGAGGGAGGAAGTTTACCTAGAA
ACTCTCTCGCTTGTGCAAAAATCTTGCTCAGATTTGCAACGTCTACCTCC
TTCTTTGGAGAAGCTTGGTGGCGAGATTGTTGGGAGCGGTAAGAAGACCA
AGGAGTTTGCCGAGATCCTAGCGCTGTCGGGTGCGCTATCGCTGATGATG
CGACATGTACTGAAGCACTTCGATTGTTGTCCACCGGAATGGATGGCATA
CATGTACACGGTATGTCACGCTCCTGGAAGCTTGAGAGCAAATGATGACG
GGACTCGTGCATGCCATGCCGCGTTATGGGAGCTGGCGCTCAAATCAAAA
AGCGCAAGAGCTGAGATGGCCATTCATTTGCTCTCCAACAAGAAAATTCA back to top
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