EWM25095.1, cds5581 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25095.1
Unique Name	cds5581
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:366708..367471 -
Alignment location	CM002466.1:364860..366495 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25095.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g9.2904.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:366708..367471 -
CM002466.1	supercontig	CM002466.1:364860..366495 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

Homology

[Close]

BLAST of EWM25095.1 vs. NCBI_GenBank
Match: gi|585106733|gb|EWM25095.1| (hypothetical protein Naga_100016g9 [Nannochloropsis gaditana])

HSP 1 Score: 1645.56 bits (4260), Expect = 0.000e+0
Identity = 799/799 (100.00%), Postives = 799/799 (100.00%), Query Frame = 0

Query:    1 MSEILMAKLREGKPPKNAKILNILREQVHQLGQDTETISHSLDFAQALAELLPRLRDTDNDSRKLARLVYFFITEICAHHARTCDAAIFLEAVLADFRSATYFPRQVVAVQSLGLLSSQYYHHHRSKDELRREEVYLETLSLVQKSCSDLQRLPPSLEKLGGEIVGSGKKTKEFAEILALSGALSLMMRHVLKHFDCCPPEWMAYMYTVCHAPGSLRANDDGTRACHAALWELALKSKSARAEMAIHLLSNKKIHSSSALSDILACVFYLRTCACIASSTGQDVPPATTEAFFQVLKDAALKDKRLQVSLEAINLLYQFSWHEFGTLSSTRASDVPAIAKVLQHAVEEPAAQLTTLHAVFGAMRTMAKWLVRYQYEGEKGDEFTLIAQADIGEEDAGYMHAGVLKRLRNTITSRADALESSKTLSTQLRLSLLQTLIWLVPSLPRASFPSNASNRYNSRISFSALSLSQPGGEPVLSSLTSLSTSDESQLWQDLERRLAEAPAYFTDVQLGLLLEEGRDRMSVEAVSSSSGPSSRILASLLSRTSRIYFNVAPTDAMAEYLIKTWEGLLSPRPSDPVIQAELLAAIFCVLDLDFCPKPASGNTHIYFKAGIRPQAVWQTQGQVQEPSCTQKRAIYARLLRLASWFLGEHALRFTTEQLGVIVLRLKTLSLFSDCFTQYEAVQALCKVAVCCEQADIQVELYEFLRDFTCADLKSPLTGINEVGMSTFGEAHENEDQAQKLSFGVGNGFGSQEDCVAATLEHLRGVFRDHLKSLGLDPPGDPSQSSIVGVSLFVVQNAKE 799
            MSEILMAKLREGKPPKNAKILNILREQVHQLGQDTETISHSLDFAQALAELLPRLRDTDNDSRKLARLVYFFITEICAHHARTCDAAIFLEAVLADFRSATYFPRQVVAVQSLGLLSSQYYHHHRSKDELRREEVYLETLSLVQKSCSDLQRLPPSLEKLGGEIVGSGKKTKEFAEILALSGALSLMMRHVLKHFDCCPPEWMAYMYTVCHAPGSLRANDDGTRACHAALWELALKSKSARAEMAIHLLSNKKIHSSSALSDILACVFYLRTCACIASSTGQDVPPATTEAFFQVLKDAALKDKRLQVSLEAINLLYQFSWHEFGTLSSTRASDVPAIAKVLQHAVEEPAAQLTTLHAVFGAMRTMAKWLVRYQYEGEKGDEFTLIAQADIGEEDAGYMHAGVLKRLRNTITSRADALESSKTLSTQLRLSLLQTLIWLVPSLPRASFPSNASNRYNSRISFSALSLSQPGGEPVLSSLTSLSTSDESQLWQDLERRLAEAPAYFTDVQLGLLLEEGRDRMSVEAVSSSSGPSSRILASLLSRTSRIYFNVAPTDAMAEYLIKTWEGLLSPRPSDPVIQAELLAAIFCVLDLDFCPKPASGNTHIYFKAGIRPQAVWQTQGQVQEPSCTQKRAIYARLLRLASWFLGEHALRFTTEQLGVIVLRLKTLSLFSDCFTQYEAVQALCKVAVCCEQADIQVELYEFLRDFTCADLKSPLTGINEVGMSTFGEAHENEDQAQKLSFGVGNGFGSQEDCVAATLEHLRGVFRDHLKSLGLDPPGDPSQSSIVGVSLFVVQNAKE
Sbjct:    1 MSEILMAKLREGKPPKNAKILNILREQVHQLGQDTETISHSLDFAQALAELLPRLRDTDNDSRKLARLVYFFITEICAHHARTCDAAIFLEAVLADFRSATYFPRQVVAVQSLGLLSSQYYHHHRSKDELRREEVYLETLSLVQKSCSDLQRLPPSLEKLGGEIVGSGKKTKEFAEILALSGALSLMMRHVLKHFDCCPPEWMAYMYTVCHAPGSLRANDDGTRACHAALWELALKSKSARAEMAIHLLSNKKIHSSSALSDILACVFYLRTCACIASSTGQDVPPATTEAFFQVLKDAALKDKRLQVSLEAINLLYQFSWHEFGTLSSTRASDVPAIAKVLQHAVEEPAAQLTTLHAVFGAMRTMAKWLVRYQYEGEKGDEFTLIAQADIGEEDAGYMHAGVLKRLRNTITSRADALESSKTLSTQLRLSLLQTLIWLVPSLPRASFPSNASNRYNSRISFSALSLSQPGGEPVLSSLTSLSTSDESQLWQDLERRLAEAPAYFTDVQLGLLLEEGRDRMSVEAVSSSSGPSSRILASLLSRTSRIYFNVAPTDAMAEYLIKTWEGLLSPRPSDPVIQAELLAAIFCVLDLDFCPKPASGNTHIYFKAGIRPQAVWQTQGQVQEPSCTQKRAIYARLLRLASWFLGEHALRFTTEQLGVIVLRLKTLSLFSDCFTQYEAVQALCKVAVCCEQADIQVELYEFLRDFTCADLKSPLTGINEVGMSTFGEAHENEDQAQKLSFGVGNGFGSQEDCVAATLEHLRGVFRDHLKSLGLDPPGDPSQSSIVGVSLFVVQNAKE 799

The following BLAST results are available for this feature:

BLAST of EWM25095.1 vs. NCBI_GenBank

BLAST of EWM25095.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106733\|gb\|EWM25095.1\|	0.000e+0	100.00	hypothetical protein Naga_100016g9 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5595	rna5595	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications