rna5594, rna5594 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5594
Unique Name	rna5594
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1760
Alignment location	CM002466.1:363322..364843 +

Link to JBrowse

Properties


Property Name	Value
Product	u5 small nuclear ribonucleoprotein 40 kda protein
Orig transcript id	gnl\|cribi\|Naga_100016g10.2929.mrna
Orig protein id	gnl\|cribi\|Naga_100016g10.2929
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:363322..364843 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g10	gene5406	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5594	rna5594-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25120.1	cds5580	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:363322..364843+
coding sequence from alignment at CM002466.1:363322..364843+

mRNA sequence

>rna5594 ID=rna5594|Name=rna5594|organism=Nannochloropsis gaditana|type=mRNA|length=1760bp
GAGTTGTGTTGAAAGAAACGGATTTCGGGGCTCGATAGGAGGGGAAAATT
CTTGTCATGCTCCCTGGGCTTGTCTTGCTTGCTTATTCAATCTTGAGATA
AATCGGGTCTCAAGAAAGCGTCATCAACGTCAGACGTTGCTTCATGTCAA
CTCTTGGGAAAGTAGTAAAGGTCTATATTCAAAAATGTAAATGAAACGTG
ACAAAAACTCTGTCGCAGGGACTCAACGTGCTTGATCTTTAGGTTTTAAC
ATTGATACACCGTATAATAGCACCATGTAAAAGAATACCATACTTAATAC
CACTGTCAAAACACAGCATCTACATGACGAGACAAGAAGGATGTTCAGCA
CGTCATATTGCAAAGACAGCAGCCTGGACTATACTCTCTTTGTCGATTCG
TTCTTTTGCGTATTCGCGACGTGGTGTGGCAATGGCAAAGCCCTTGAGCG
CCTTTGGAAGTGCTCCTTCTACGGGAAAGGCCGGTCTGCTAGGGTTACAG
ACGCCCTATCTCGTATACGTAACCCCGCCTGTCCCGGCTAAGGGCGTGCA
AGATGCTTGGTTCGAAAAAGTGAGCAATCTGTACAGACATGCGTGTATGT
CATAATGCTTATTTCTCATTGCATTAACCCTCACAGATCAAGCAATGCGG
CGAAGCCGGAGTTCCGGTTGTGCAAATTCGCGACAAAGAGATGCCATCTG
AGGCTTTAAAATCCGTAGTCGTTCGGTGCCGGGAAATCCTTGATACTGCC
AGCGTCCCTTCCAGGAGCCCGAAGACCCTTCTGTTCCTCAACGGAAATCC
TGAGCTTCGGGAGTACTCAGATGGGATTCACTTTCCTGAATCTTCGCTCC
ACTTAGTGCCCTCCATGCGCACGGATCGTAAGAGGGGGAGTGGACAGGGG
CCTGTGATGGGTGCCTCCGTACACAGTGTGGTGCGTGCGAGAAAGAAGCG
GGAGGGAAGGATGGAGGAGGTTGTCTCAGTAGAAAATCCCGTCCAAATAC
CACTTTCGATGCCTTTACCTATCTTCATATCTAGGAGGCGGCCGTAAAAG
CCGCAAGCAGACGTGTCGACAACCTGCAGGTGGGCACTATGTTTCCAACA
GGCAGTCACCCCGAGAAGCTTGAGGTCGAAGGCCCAGCCTTGATGGCGGA
CGTGGACGCGGCGCTTCGACAAGCCTGCCTCCGCGAACGGGTCCATCTCT
GTGGCATCGGGGGAATCACGCCACTCAATTGCGGTAATGTCCTGCGTGCG
GGTGCTGACAGCGTTGCGGTCATCAGTGGGATCACCTCAATAGAAGGTAG
CGTTGCGCGAACAGTGCAAGCCTTCCGGGATACGTTTGCGAGAATGGAGG
AAGAAGAGCGCCGGGCTTTGAGTAATGATACGTAAAGCATAGCAATAAAA
ATGGATATGTGAATAAACTTAGCATGGCACGTAAAAGAGACCGGATTAAT
GATTTTGGAATGTGCTCCATGTCGAGCGACTGACGTAGCCCAATCAAACA
TCATTTTGTAGAAATGCTAGGTTCTACTCATCCTATTTGGAACAATGCTT
GACTTAAACGAGCATTTGCCATCGATTAGAATTTTTCATGTGCGAGAAGT
AGATTGAGAGACACAGCAATCGGCTTCCTGCTAATCATCGATGTGTACTT
AATAGTCCCAAGGCTCTCTCCCGAGGAACCGAAGTAGACCCAGTGCCATG
CGACCTCAAAAATCCTTTTTACATTCAGGAAAAGGGAATCAAATCATTTC
GTTCTCATGG

protein sequence of rna5594

>rna5594-protein ID=rna5594-protein|Name=rna5594|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTML
LTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNA
VLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAG
DKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFA
GGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTV
RQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAV
HVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG

mRNA from alignment at CM002466.1:363322..364843+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5594 ID=rna5594|Name=rna5594|organism=Nannochloropsis gaditana|type=mRNA|length=1522bp|location=Sequence derived from alignment at CM002466.1:363322..364843+ (Nannochloropsis gaditana)
ATCTTGTTAATAGGGTGCCGTGAGATACGAGAGCTTGATGGTCAGGTTTC
CATTTTGAGGGCTGACTTCTTGCTTTGTGGCGTCTTGACTTCTCCCtcat
gccttcccctctACTGCATCCGCCTTTGTTATAACCACGACTAACTCATA
CCTATCTGATCACCATAATACTTTAGGCATCTATAGCATGGATGAAGGCC
CTGAGGACGAGGCAAGGCGGACTGGCGCCGATGATAGCGCCCTGGCCACG
GTTCCGGAGAGTTCCGGCACGCTGGCAATAAGCAGTGCTCCCCCAGCCCC
AGGACGGACGTCGCACTTGGCCGCATCTACCATGCTTTTGACCGGTCATG
CTGCAGCCGTGTATTGTCTGCAGTTCAATCCCATGGGGGACGCTTTGGCA
ACGGGGTCTTTTGATAAAACAATATTGCTGTGGGACGTATATGAGGTACG
TCGTCgttgtctcccccccccccgcgagTTTCCTTATCCCCTCGTGGCGC
ACTTTAGGTTCGTTTCAGAATTTCGTCAGATCAAGCATCCTCTTACCTTT
CACAACCTTGGGATGTACGATATGATGCATGATAGGATTGTAAAAATTAC
AATGTACTGGCTGGGCATACGAACGCTGTGTTGGATCTGAAATGGTCGCC
AAATGGTAGCCAAATCGCTTCGGCATCGGCCGATAAGACGCTCATGTTAT
GGGACAGCAACAAGGGCACTCGGATCCGTAAATGCAAGGAGCACACTGGA
TGCGTAAACAGTGTGGCCGTGGCGGGCGACAAAGTCGCGGCGTTGATAGC
CACGGCAAGCGACGATCGCACTGTGAAGCTGTGGGACAACCGCAGCCGGC
GATCGGTTCAAACAATCGAGCATCGCTTTCAGTTGCTGGCGGTAGCGCTG
TCCGCGGATGGGAAAAAGGTGTTCGCGGGCGGCATCGACAACAGCATCCA
GGTCTGGGACATGGCCAAGGGACCGGCTCCTCTAGACGTGCTCGAGGGCC
ACTCGGAGACGGTCACGGGCTTGAGCCTGAGTCCCGACGGCAAGTATTTG
CTGTCGAACGCCATGGACAACACCGTGCGGCAGTGGGACGTGCGGCCCTT
TGTGACGGGAGGGCGGCTGGTCCAGGTCTTCCAAGGAGGGACACACGGCT
CGGATCGCAACCTCTTGCGCTGCGCCTGGTCGCAAGACGGCGAGATGGTC
TCTGCGGGCTCCGCAGATCGCGCGGTTCATGTATGGGATGTGCCTTCGGG
TCAGGAGCTCTACTACCTGCCGGGACATAAAGGGACCGTAAATGAGgtcg
tcttccatccccgGGAGCCTGTGATAGCCTCTGCGTCTTCGGACAAAACG
TGCTATTTGGGGGAGCTTGCCGGATGATAACTCTTATCGTTAATCATCGT
GGAAGATAAAAACTGAGAATTTGAGTATTAGGCGACGGTTCCATGCTCTT
TCTGTGTTTCATTTTAAGTAGAGTagaacagcaacagcaatgTAATTGCT
CTGTTTGTACAGCACGGGCATT

Coding sequence (CDS) from alignment at CM002466.1:363322..364843+

>rna5594 ID=rna5594|Name=rna5594|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002466.1:363322..364843+ (Nannochloropsis gaditana)
ATGGATGAAGGCCCTGAGGACGAGGCAAGGCGGACTGGCGCCGATGATAG
CGCCCTGGCCACGGTTCCGGAGAGTTCCGGCACGCTGGCAATAAGCAGTG
CTCCCCCAGCCCCAGGACGGACGTCGCACTTGGCCGCATCTACCATGCTT
TTGACCGGTCATGCTGCAGCCGTGTATTGTCTGCAGTTCAATCCCATGGG
GGACGCTTTGGCAACGGGGTCTTTTGATAAAACAATATTGCTGTGGGACG
TATATGAGGATTGTAAAAATTACAATGTACTGGCTGGGCATACGAACGCT
GTGTTGGATCTGAAATGGTCGCCAAATGGTAGCCAAATCGCTTCGGCATC
GGCCGATAAGACGCTCATGTTATGGGACAGCAACAAGGGCACTCGGATCC
GTAAATGCAAGGAGCACACTGGATGCGTAAACAGTGTGGCCGTGGCGGGC
GACAAAGTCGCGGCGTTGATAGCCACGGCAAGCGACGATCGCACTGTGAA
GCTGTGGGACAACCGCAGCCGGCGATCGGTTCAAACAATCGAGCATCGCT
TTCAGTTGCTGGCGGTAGCGCTGTCCGCGGATGGGAAAAAGGTGTTCGCG
GGCGGCATCGACAACAGCATCCAGGTCTGGGACATGGCCAAGGGACCGGC
TCCTCTAGACGTGCTCGAGGGCCACTCGGAGACGGTCACGGGCTTGAGCC
TGAGTCCCGACGGCAAGTATTTGCTGTCGAACGCCATGGACAACACCGTG
CGGCAGTGGGACGTGCGGCCCTTTGTGACGGGAGGGCGGCTGGTCCAGGT
CTTCCAAGGAGGGACACACGGCTCGGATCGCAACCTCTTGCGCTGCGCCT
GGTCGCAAGACGGCGAGATGGTCTCTGCGGGCTCCGCAGATCGCGCGGTT
CATGTATGGGATGTGCCTTCGGGTCAGGAGCTCTACTACCTGCCGGGACA
TAAAGGGACCGTAAATGAGgtcgtcttccatccccgGGAGCCTGTGATAG
CCTCTGCGTCTTCGGACAAAACGTGCTATTTGGGGGAGCTTGCCGGATGA
ATGGATGAAGGCCCTGAGGACGAGGCAAGGCGGACTGGCGCCGATGATAG
CGCCCTGGCCACGGTTCCGGAGAGTTCCGGCACGCTGGCAATAAGCAGTG
CTCCCCCAGCCCCAGGACGGACGTCGCACTTGGCCGCATCTACCATGCTT
TTGACCGGTCATGCTGCAGCCGTGTATTGTCTGCAGTTCAATCCCATGGG
GGACGCTTTGGCAACGGGGTCTTTTGATAAAACAATATTGCTGTGGGACG
TATATGAGGATTGTAAAAATTACAATGTACTGGCTGGGCATACGAACGCT
GTGTTGGATCTGAAATGGTCGCCAAATGGTAGCCAAATCGCTTCGGCATC
GGCCGATAAGACGCTCATGTTATGGGACAGCAACAAGGGCACTCGGATCC
GTAAATGCAAGGAGCACACTGGATGCGTAAACAGTGTGGCCGTGGCGGGC
GACAAAGTCGCGGCGTTGATAGCCACGGCAAGCGACGATCGCACTGTGAA
GCTGTGGGACAACCGCAGCCGGCGATCGGTTCAAACAATCGAGCATCGCT
TTCAGTTGCTGGCGGTAGCGCTGTCCGCGGATGGGAAAAAGGTGTTCGCG
GGCGGCATCGACAACAGCATCCAGGTCTGGGACATGGCCAAGGGACCGGC
TCCTCTAGACGTGCTCGAGGGCCACTCGGAGACGGTCACGGGCTTGAGCC
TGAGTCCCGACGGCAAGTATTTGCTGTCGAACGCCATGGACAACACCGTG
CGGCAGTGGGACGTGCGGCCCTTTGTGACGGGAGGGCGGCTGGTCCAGGT
CTTCCAAGGAGGGACACACGGCTCGGATCGCAACCTCTTGCGCTGCGCCT
GGTCGCAAGACGGCGAGATGGTCTCTGCGGGCTCCGCAGATCGCGCGGTT
CATGTATGGGATGTGCCTTCGGGTCAGGAGCTCTACTACCTGCCGGGACA
TAAAGGGACCGTAAATGAGgtcgtcttccatccccgGGAGCCTGTGATAG
CCTCTGCGTCTTCGGACAAAACGTGCTATTTGGGGGAGCTTGCCGGATGA

Synonyms

Publications