EWM25120.1, cds5580 (CDS) Nannochloropsis gaditana

Overview
NameEWM25120.1
Unique Namecds5580
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:363509..363766 +
Alignment locationCM002466.1:363907..364698 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25120.1
Productu5 small nuclear ribonucleoprotein 40 kda protein
Orig transcript idgnl|cribi|Naga_100016g10.2929.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:363509..363766 +
CM002466.1supercontigCM002466.1:363907..364698 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|585106758|gb|EWM25120.1| (u5 small nuclear ribonucleoprotein 40 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query:    1 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 349
            MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG
Sbjct:    1 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 349          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|553196188|ref|XP_005856286.1| (Prp8 binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292764|gb|EKU20066.1| Prp8 binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 348/349 (99.71%), Postives = 348/349 (99.71%), Query Frame = 0
Query:    1 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 349
            MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNG QIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG
Sbjct:    8 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGCQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 356          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|813128197|ref|XP_012197522.1| (hypothetical protein SPRG_03552 [Saprolegnia parasitica CBS 223.65] >gi|641537788|gb|KDO31632.1| hypothetical protein SPRG_03552 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 367.466 bits (942), Expect = 4.887e-123
Identity = 174/331 (52.57%), Postives = 230/331 (69.49%), Query Frame = 0
Query:   20 ATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPA-PLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPR--EPVIASASSDKTCYLGEL 347
            A VP  +  + IS+   +  RTS L A TMLL+GH+AAVY + F+P G ++A+ SFDK+I LW+VY +C NYNVL+GH NAVL ++WS +GS + SASADKT+ LWD+  G R++  K HT  VNSV     K   L+ + SDDRT+K+WD R +R V TIE RFQ+ AV   AD  +VF+GG+D  ++ WDM K  A P+D+L GHSE +T L +SPD  ++LSNAMD+T+R+WDVRPF  G R   ++ G  H +DRNL+R  WS D   V +GSADR V++WD  +G+  Y+LPGH G+VNEV FHP   EP++ S SSDKT Y GEL
Sbjct:   33 AIVPVDAKVVTISAKADSSQRTSDLLAPTMLLSGHSAAVYSMAFSPNGKSVASASFDKSIFLWNVYGECANYNVLSGHKNAVLQVQWSYDGSMLMSASADKTVGLWDAETGRRLKNYKTHTAIVNSVCPVA-KGPQLLVSGSDDRTIKIWDTRLKREVDTIEERFQVTAVCFGADSSQVFSGGVDGLVKQWDMRKADAGPVDILTGHSEIITSLQMSPDSNFVLSNAMDSTLRKWDVRPFCEGARCKMIYYGAKHSNDRNLIRANWSPDMRYVGSGSADRHVYIWDAETGELRYHLPGHSGSVNEVAFHPNPSEPIVGSCSSDKTMYFGEL 362          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|301112272|ref|XP_002905215.1| (WD domain-containing protein [Phytophthora infestans T30-4] >gi|262095545|gb|EEY53597.1| WD domain-containing protein [Phytophthora infestans T30-4])

HSP 1 Score: 366.696 bits (940), Expect = 7.337e-123
Identity = 181/351 (51.57%), Postives = 237/351 (67.52%), Query Frame = 0
Query:    2 DEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGR----TSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELA 348
            DE        T A  + LA     +  +A+  A  AP R    TS L A TMLL+GH+AAVY L+F+P G  +A+ SFD++ILLWDVY +C+NYNVL+GH NAVL+++W+ + +Q+ SASADKT+ LWD   GTRI+K   H+  VNS          LI + SDD T K+WD RS+R+V++ E++FQ+ AV  S D  +V  GG+D  I++WD+ K      VL+GH++ VTG+SLSPDG YLLSNAMD+TVR+WDVRPFV G RL   + G  H  DR L+RC WS D   V++GSADR V++WD  +G   Y+LPGH G+VNE  FHP EP++ S SSDKT YLGELA
Sbjct:   10 DEDASPSTALTPAGQTQLAKRSRVTEIVAVDQAVVAPKRVEDRTSGLQAPTMLLSGHSAAVYSLKFSPSGQHVASCSFDRSILLWDVYGECRNYNVLSGHKNAVLEVQWTYDSAQVVSASADKTVGLWDGESGTRIKKFAGHSSIVNSCCPVTSG-PTLIVSGSDDCTTKIWDVRSKRAVKSFENKFQVTAVCFSGDNSQVITGGLDGDIKMWDLRKDEVST-VLQGHADIVTGVSLSPDGNYLLSNAMDSTVRKWDVRPFVKGERLKTTYMGAKHSFDRTLIRCGWSSDMRFVASGSADRYVYIWDAETGNLRYHLPGHTGSVNEATFHPTEPIVGSCSSDKTIYLGELA 358          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|669147506|ref|XP_008609315.1| (hypothetical protein SDRG_05380 [Saprolegnia diclina VS20] >gi|530738911|gb|EQC37153.1| hypothetical protein SDRG_05380 [Saprolegnia diclina VS20])

HSP 1 Score: 367.081 bits (941), Expect = 7.642e-123
Identity = 174/331 (52.57%), Postives = 229/331 (69.18%), Query Frame = 0
Query:   20 ATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPA-PLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPR--EPVIASASSDKTCYLGEL 347
            A VP  +  + IS+   +  RTS L A TMLL+GH+AAVY + F+P G + A+ SFDK+I LW+VY +C NYNVL+GH NAVL ++WS +GS + SASADKT+ LWD+  G R++  K HT  VNSV     K   L+ + SDDRT+K+WD R +R V TIE RFQ+ AV   AD  +VF+GG+D  ++ WDM K  A P+D+L GHSE +T L +SPD  ++LSNAMD+T+R+WDVRPF  G R   ++ G  H +DRNL+R  WS D   V +GSADR V++WD  +G+  Y+LPGH G+VNEV FHP   EP++ S SSDKT Y GEL
Sbjct:   33 AIVPVDAKVVTISAKTDSSQRTSDLLAPTMLLSGHSAAVYSMAFSPNGKSAASASFDKSIFLWNVYGECTNYNVLSGHKNAVLQVQWSYDGSMLVSASADKTVGLWDAETGRRLKNYKTHTAIVNSVCPVA-KGPQLLVSGSDDRTIKIWDTRLKREVATIEERFQVTAVCFGADSSQVFSGGVDGLVKQWDMRKADAGPVDILTGHSEIITSLQMSPDSNFVLSNAMDSTLRKWDVRPFCEGARCKMIYYGAKHSNDRNLIRANWSPDMRYVGSGSADRHVYIWDTETGELRYHLPGHSGSVNEVAFHPNPSEPIVGSCSSDKTMYFGEL 362          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|299469791|emb|CBN76645.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 363.614 bits (932), Expect = 9.530e-122
Identity = 177/311 (56.91%), Postives = 224/311 (72.03%), Query Frame = 0
Query:   40 RTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDV---LEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGEL 347
            R+S L A TMLLTGH AAVY L+F+P G  LA+   D+ I LWD   +C NYNVL GH NA+LDL WSPN   I +ASADKTL  WD+N G R +  K H+G VNS +++  +   L+A+ASDD  VKLWD R RRSV    +++Q+ AV LS D ++V +GGIDN I+V+D+ K    LD+   + GH++TVTGL+LSPDG +LLSN+MDN+V  WDVRPF    RL + F G  HG ++NLL+CAWS DGEMVSAGS+D+AVH+WD PS QELY+LPGH G+VNE+ FHP E +I S  SDK  YLGE+
Sbjct:   44 RSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECANYNVLRGHKNAILDLHWSPNSPTIITASADKTLGYWDANAGKRKKTFKGHSGVVNSCSIS--RTGNLMASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRK----LDIAYTMTGHTDTVTGLALSPDGNHLLSNSMDNSVIMWDVRPFANQNRLEKTFHGIKHGGEKNLLKCAWSPDGEMVSAGSSDQAVHIWDEPSTQELYFLPGHTGSVNEMTFHPTESIIGSCGSDKNIYLGEI 348          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|570970823|gb|ETP33942.1| (hypothetical protein F442_17624 [Phytophthora parasitica P10297])

HSP 1 Score: 362.844 bits (930), Expect = 2.596e-121
Identity = 170/309 (55.02%), Postives = 222/309 (71.84%), Query Frame = 0
Query:   40 RTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELA 348
            RTS L A TMLL+GH+AAVY L+F+P G  +A+ SFD++ILLWDVY +C+NYNV  GH NAVL+++W+ + +Q+ SASADKT+ LWD+  G+RI+K   H+  VNS          LI + SDD T K+WD RS+R+V++ E++FQ+ AV  S D  +V  GG+D  I++WD+ K      VL+GH++ VTG+SLSPDG YLLSNAMD+TVR+WDVRPFV G RL   F G  H  DR L+RC WS D   V++GSADR V++WD  +G   Y+LPGH G+VNE  FHP EP++ S SSDKT YLGELA
Sbjct:   52 RTSGLMAPTMLLSGHSAAVYSLKFSPSGQHVASCSFDRSILLWDVYGECRNYNVFNGHKNAVLEVQWTYDSAQVVSASADKTVGLWDAESGSRIKKFAGHSSIVNSCCPVTSG-PTLIVSGSDDCTTKIWDVRSKRAVKSFENKFQVTAVCFSGDNSQVITGGLDGDIKMWDLRKDEVST-VLQGHADIVTGVSLSPDGSYLLSNAMDSTVRKWDVRPFVKGERLKTTFMGAKHSFDRTLIRCGWSSDMRFVASGSADRYVYIWDAETGNLRYHLPGHTGSVNEATFHPTEPIVGSCSSDKTIYLGELA 358          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|675174775|ref|XP_008896272.1| (hypothetical protein PPTG_04173 [Phytophthora parasitica INRA-310] >gi|567950530|gb|ETK76241.1| hypothetical protein L915_17300 [Phytophthora parasitica] >gi|567979200|gb|ETL29682.1| hypothetical protein L916_17193 [Phytophthora parasitica] >gi|568008685|gb|ETL82902.1| hypothetical protein L917_17028 [Phytophthora parasitica] >gi|568038611|gb|ETM36136.1| hypothetical protein L914_17097 [Phytophthora parasitica] >gi|568103975|gb|ETN18632.1| hypothetical protein PPTG_04173 [Phytophthora parasitica INRA-310] >gi|570316800|gb|ETO64748.1| hypothetical protein F444_17807 [Phytophthora parasitica P1976] >gi|570940578|gb|ETP05835.1| hypothetical protein F441_17647 [Phytophthora parasitica CJ01A1] >gi|970634821|gb|KUF79899.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Phytophthora nicotianae])

HSP 1 Score: 362.844 bits (930), Expect = 2.863e-121
Identity = 170/309 (55.02%), Postives = 222/309 (71.84%), Query Frame = 0
Query:   40 RTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELA 348
            RTS L A TMLL+GH+AAVY L+F+P G  +A+ SFD++ILLWDVY +C+NYNV  GH NAVL+++W+ + +Q+ SASADKT+ LWD+  G+RI+K   H+  VNS          LI + SDD T K+WD RS+R+V++ E++FQ+ AV  S D  +V  GG+D  I++WD+ K      VL+GH++ VTG+SLSPDG YLLSNAMD+TVR+WDVRPFV G RL   F G  H  DR L+RC WS D   V++GSADR V++WD  +G   Y+LPGH G+VNE  FHP EP++ S SSDKT YLGELA
Sbjct:   52 RTSGLMAPTMLLSGHSAAVYSLKFSPSGQHVASCSFDRSILLWDVYGECRNYNVFNGHKNAVLEVQWTYDSAQVVSASADKTVGLWDAESGSRIKKFAGHSSIVNSCCPVTSG-PTLIVSGSDDCTTKIWDVRSKRAVKSFENKFQVTAVCFSGDNSQVITGGLDGDIKMWDLRKDEVST-VLQGHADIVTGVSLSPDGSYLLSNAMDSTVRKWDVRPFVKGERLKTTFMGAKHSFDRTLIRCGWSSDMRFVASGSADRYVYIWDAETGNLRYHLPGHTGSVNEATFHPTEPIVGSCSSDKTIYLGELA 358          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|566013104|gb|ETI36015.1| (hypothetical protein F443_17769 [Phytophthora parasitica P1569])

HSP 1 Score: 361.303 bits (926), Expect = 1.221e-120
Identity = 169/309 (54.69%), Postives = 222/309 (71.84%), Query Frame = 0
Query:   40 RTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELA 348
            RTS L A TMLL+GH+AAVY L+F+P G  +A+ SFD++ILLW+VY +C+NYNV  GH NAVL+++W+ + +Q+ SASADKT+ LWD+  G+RI+K   H+  VNS          LI + SDD T K+WD RS+R+V++ E++FQ+ AV  S D  +V  GG+D  I++WD+ K      VL+GH++ VTG+SLSPDG YLLSNAMD+TVR+WDVRPFV G RL   F G  H  DR L+RC WS D   V++GSADR V++WD  +G   Y+LPGH G+VNE  FHP EP++ S SSDKT YLGELA
Sbjct:   52 RTSGLMAPTMLLSGHSAAVYSLKFSPSGQHVASCSFDRSILLWNVYGECRNYNVFNGHKNAVLEVQWTYDSAQVVSASADKTVGLWDAESGSRIKKFAGHSSIVNSCCPVTSG-PTLIVSGSDDCTTKIWDVRSKRAVKSFENKFQVTAVCFSGDNSQVITGGLDGDIKMWDLRKDEVST-VLQGHADIVTGVSLSPDGSYLLSNAMDSTVRKWDVRPFVKGERLKTTFMGAKHSFDRTLIRCGWSSDMRFVASGSADRYVYIWDAETGNLRYHLPGHTGSVNEATFHPTEPIVGSCSSDKTIYLGELA 358          
BLAST of EWM25120.1 vs. NCBI_GenBank
Match: gi|1173944487|gb|OQR93216.1| (WD domain-containing protein [Achlya hypogyna])

HSP 1 Score: 357.451 bits (916), Expect = 5.515e-119
Identity = 171/311 (54.98%), Postives = 212/311 (68.17%), Query Frame = 0
Query:   40 RTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGSQIASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRSRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPA-PLDVLEGHSETVTGLSLSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFH--PREPVIASASSDKTCYLGEL 347
            RTS L A TMLLTGH+AA+Y + F+PMG   A+ SFDKTI LW+VY +C NYNVL GH NAVL ++WS +GS + SASADKT+ LWD+  G R++  K HTG VNSV          I + SDDRT+KLWD R +R V  IE RFQ+ AV    D   VF+GG+D  ++ WDM K  A P+D+  GHSE +T L LSPD  ++LSNAMD+TVR+WDVRPF  G R   V+ G  H +DRNL+R  WS D   V +GSADR  ++WD  +G+  Y LPGH G+VNEV FH  P EP++ S SSDKT Y GEL
Sbjct:   52 RTSDLPAPTMLLTGHSAAIYSMAFSPMGKTAASASFDKTIFLWNVYGECSNYNVLYGHKNAVLQVQWSYDGSMLVSASADKTVGLWDAETGRRLKNFKTHTGIVNSVCPVPKGPQTFI-SGSDDRTIKLWDTRLKREVNNIEERFQVTAVCFGGDSNTVFSGGVDGLVKQWDMRKSEAGPVDIFAGHSEIITSLQLSPDCNFVLSNAMDSTVRKWDVRPFCEGPRCKMVYYGAKHSNDRNLIRANWSPDMRYVGSGSADRYAYIWDSETGELRYQLPGHTGSVNEVAFHPNPNEPIVGSCSSDKTMYFGEL 361          
The following BLAST results are available for this feature:
BLAST of EWM25120.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106758|gb|EWM25120.1|0.000e+0100.00u5 small nuclear ribonucleoprotein 40 kda protein ... [more]
gi|553196188|ref|XP_005856286.1|0.000e+099.71Prp8 binding protein, partial [Nannochloropsis gad... [more]
gi|813128197|ref|XP_012197522.1|4.887e-12352.57hypothetical protein SPRG_03552 [Saprolegnia paras... [more]
gi|301112272|ref|XP_002905215.1|7.337e-12351.57WD domain-containing protein [Phytophthora infesta... [more]
gi|669147506|ref|XP_008609315.1|7.642e-12352.57hypothetical protein SDRG_05380 [Saprolegnia dicli... [more]
gi|299469791|emb|CBN76645.1|9.530e-12256.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|570970823|gb|ETP33942.1|2.596e-12155.02hypothetical protein F442_17624 [Phytophthora para... [more]
gi|675174775|ref|XP_008896272.1|2.863e-12155.02hypothetical protein PPTG_04173 [Phytophthora para... [more]
gi|566013104|gb|ETI36015.1|1.221e-12054.69hypothetical protein F443_17769 [Phytophthora para... [more]
gi|1173944487|gb|OQR93216.1|5.515e-11954.98WD domain-containing protein [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5594rna5594Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications