rna5593, rna5593 (mRNA) Nannochloropsis gaditana

Overview
Namerna5593
Unique Namerna5593
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1772
Alignment locationCM002466.1:360889..362809 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g11.2931.mrna
Orig protein idgnl|cribi|Naga_100016g11.2931
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:360889..362809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g11gene5405Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5593rna5593-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25122.1cds5579Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5593 ID=rna5593|Name=rna5593|organism=Nannochloropsis gaditana|type=mRNA|length=1772bp
CGAAATCCGTTTCTTTCAACACAACTCGCCTACCGTCGCACACAACCATT
TTCCATCGCAACATGAAATGACCTCAATGGCCTAAGCACGGGACAGCAAT
AACCTCCTACCCCCTATTCAAATAACGGCAAGGAGCGGGGGGAAGTATCC
ACATGCTAAACGACCTCTCTCGTCCTTGAGTAAACCTCACTCTGCAGGTA
AAAAATTACAACATTCACAGGGAAATGGGACTTCATCTTACCTTGCATGA
TTGTAACCTAGATTTGCTCGCCACGATGGTTGGGTTTCTGAATGAACAGG
ATCGGAAATGCTTCGCCATTGCCCACTCTTATCATTTCCTCGTCCTGCAC
ACCATTGTGCATTGTGGGACAGTCAGTACGTCTTTGTCGGTAAATACACC
AGCAGTGTGCGTCCCATGCAATGCCAGCATTCTCAGTGATGATCATGGGT
TCAATGGGGAAAAAGCCCCGTCTGCTGGTCTGGAAGGGTTGAGCCGTCCG
CGCTTTTTATTCCCGGGGGAGCGTGGCGGAGAAACTGTTGCACTCTTGAG
CTACCCAAGATCGGGTAACTCAATGTTACGAACGCTCTTGGAAGAGGCGA
CGGGGATTGTAACGGGCAGTGACACGCGGCCAGACCGTGTCTTGAGTCGG
AGCTTGCTCAAACGAGGCTTGCGCGGCGAAGGCGTGGTGGACGAACGAGC
ATGGATAGTGAAGAGCCACTGGCCTGAACGCCACGGCTACCGACGGTTCC
CTGCCCAACGAATCATTCTTTTGGTCCGCAACCCATTCGATGCCATCTAC
TCCTACTTCAACATGGGACTCACCAACACACATGAGGAGAGACTGGCCAG
CGACGTGTTCGAGTCGTTGGCCCCGCTCTGGGAGGACATGGCCCGCAACG
AGGCCAGGGTGTGGGCTAAATTTAACGCCTACTGGCTCACGCAAAAGTTG
CCTGTGCTGGTGGTTCGGTACGAAGACCTGCTGCTGCACACCGAGGAGAT
GCTCGTGCGCCTCGTCAGCTTCCTGGAGAGCACTCCTCGCGAGGCAATCA
GGGCCTCGCGCTCCCACATGGCCCGCATCGCCAAGAGCGCCGCTGCCATA
CGATCGCCTCCGATTATCCCGCCTATATCCTTTTCGGAGCTCGTGCTCGA
CGGGCCCCGGGGCGAGGACCAAGGTGCGATCGATTCCAGCGTCACCAGCC
CCGTCACACCAGCGGGCACACACCCCGAGGTCCCCCCGCCTCCTTCCTCT
CGTTCTCCACCACGCTCACACGCATGCCCAGACAAAGGAAACATCGGCAA
GAGTCTACGTTTTTTCTCGCCTGCCCTAGTGGAGGACGTGGCTCGACTTG
CCGGGGGCGGGCTACGCGCCTTCGGCTACGACCCTGTCTCCCAGGGGTTT
CCCCACCGCGTCCTGTCCCTGCCCCTTTACGAGCGATGCGTCAAATTTGT
GGACCCAAGCCTTCTTTCACACCTCCCCGACCGGAACATAGCCCCGCCAG
CGGCGGCTGCCACGGCTGCAGGATCAGCCCTCCCCGCCTACAGCATGAGG
GAGCGGCGCGTGACCCTGAACACGGGAACGCAGAGGGGGGTGCGCGACCG
TGCCGACCGCTTCGGTCGAGGGATCACGAGTGTACGGCATGAACTGACCG
ACCATGACCGTCGACCTTTGCGAACTGTTTCGGCAGGGGATTCCGGGAGA
GTAAAATGAAGCACGCCTGACTACTGCATGATTAGCACTTTGTTGACTGT
CGAATCGAAGACGCGCATGTAA
back to top

protein sequence of rna5593

>rna5593-protein ID=rna5593-protein|Name=rna5593|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MPSEALKSVVVRCREILDTASVPSRSPKTLLFLNGNPELREYSDGIHFPE
SSLHLVPSMRTDRKRGSGQGPVMGASVHSVVRARKKREGRMEEVVSVENP
VQIPLSMPLPIFISRRRP
back to top

mRNA from alignment at CM002466.1:360889..362809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5593 ID=rna5593|Name=rna5593|organism=Nannochloropsis gaditana|type=mRNA|length=1921bp|location=Sequence derived from alignment at CM002466.1:360889..362809+ (Nannochloropsis gaditana)
GAGTTGTGTTGAAAGAAACGGATTTCGGGGCTCGATAGGAGGGGAAAATT
CTTGTCATGCTCCCTGGGCTTGTCTTGCTTGCTTATTCAATCTTGAGATA
AATCGGGTCTCAAGAAAGCGTCATCAACGTCAGACGTTGCTTCATGTCAA
CTCTTGGGAAAGTAGTAAAGGTCTATATTCAAAAATGTAAATGAAACGTG
ACAAAAACTCTGTCGCAGGGACTCAACGTGCTTGATCTTTAGGTTTTAAC
ATTGATACACCGTATAATAGCACCATGTAAAAGAATACCATACTTAATAC
CACTGTCAAAACACAGCATCTACATGACGAGACAAGAAGGATGTTCAGCA
CGTCATATTGCAAAGACAGCAGCCTGGACTATACTCTCTTTGTCGATTCG
TTCTTTTGCGTATTCGCGACGTGGTGTGGCAATGGCAAAGCCCTTGAGCG
CCTTTGGAAGTGCTCCTTCTACGGGAAAGGCCGGTCTGCTAGGGTTACAG
ACGCCCTATCTCGTATACGTAACCCCGCCTGTCCCGGCTAAGGGCGTGCA
AGATGCTTGGTTCGAAAAAGTGAGCAATCTGTACAGACATGCGTGTATGT
CATAATGCTTATTTCTCATTGCATTAACCCTCACAGATCAAGCAATGCGG
CGAAGCCGGAGTTCCGGTTGTGCAAATTCGCGACAAAGAGATGCCATCTG
AGGTGAGCGAGTAGGCTGAAGGGCGTTATGACTGACTGttgacttttttt
ttcctgcgtCGATACATTCCAGGCTTTAAAATCCGTAGTCGTTCGGTGCC
GGGAAATCCTTGATACTGCCAGCGTCCCTTCCAGGAGCCCGAAGACCCTT
CTGTTCCTCAACGGAAATCCTGAGCTTCGGGAGTACTCAGATGGGATTCA
CTTTCCTGAATCTTCGCTCCACTTAGTGCCCTCCATGCGCACGGATCGTA
AGAGGGGGAGTGGACAGGGGCCTGTGATGGGTGCCTCCGTACACAGTGTG
GTGCGTGCGagaaagaagcgggagggaaggatggaggaggttgtcTCAGT
AGAAAATCCCGTCCAAATACCACTTTCGATGCCTTTACCTATCTTCATAT
CTAGGAGGCGGCCGTAAAAGCCGCAAGCAGACGTGTCGACAACCTGCAGG
TACGTGGGAGCTGGAGCACTCGCATCTCACGTCCTGGTCCGTCGCCGACT
GGGCCTAGCTTATCCCTTTCGACCCAATGCCTTCAAGCAGGTGGGCACTA
TGTTTCCAACAGGCAGTCACCCCGAGAAGCTTGAGGTCGAAGGCCCAGCC
TTGATGGCGGACGTGGACGCGGCGCTTCGACAAGCCTGCCTCCGCGAACG
GGTCCATCTCTGTGGCATCGGGGGAATCACGCCACTCAATTGCGGTAATG
TCCTGCGTGCGGGTGCTGACAGCGTTGCGGTCATCAGTGGGATCACCTCA
ATAGAAGGTAGCGTTGCGCGAACAGTGCAAGCCTTCCGGGATACGTTTGc
gagaatggaggaagaagagcgccGGGCTTTGAGTAATGATACGTAAAGCA
TAGCAATAAAAATGGATATGTGAATAAACTTAGCATGGCACGTAAAAGAG
ACCGGATTAATGATTTTGGAATGTGCTCCATGTCGAGCGACTGACGTAGC
CCAATCAAACATCATTTTGTAGAAATGCTAGGTTCTACTCATCCTATTTG
GAACAATGCTTGACTTAAACGAGCATTTGCCATCGATTAGAATTTTTCAT
GTGCGAGAAGTAGATTGAGAGACACAGCAATCGGCTTCCTGCTAATCATC
GATGTGTACTTAATAGTCCCAAGGCTCTCTCCCGAGGAACCGAAGTAGAC
CCAGTGCCATGCGACCTCAAAAATCCTTTTTACATTCAGGAAAAGGGAAT
CAAATCATTTCGTTCTCATGG
back to top

Coding sequence (CDS) from alignment at CM002466.1:360889..362809+

>rna5593 ID=rna5593|Name=rna5593|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at CM002466.1:360889..362809+ (Nannochloropsis gaditana)
ATGCCATCTGAGGCTTTAAAATCCGTAGTCGTTCGGTGCCGGGAAATCCT
TGATACTGCCAGCGTCCCTTCCAGGAGCCCGAAGACCCTTCTGTTCCTCA
ACGGAAATCCTGAGCTTCGGGAGTACTCAGATGGGATTCACTTTCCTGAA
TCTTCGCTCCACTTAGTGCCCTCCATGCGCACGGATCGTAAGAGGGGGAG
TGGACAGGGGCCTGTGATGGGTGCCTCCGTACACAGTGTGGTGCGTGCGa
gaaagaagcgggagggaaggatggaggaggttgtcTCAGTAGAAAATCCC
GTCCAAATACCACTTTCGATGCCTTTACCTATCTTCATATCTAGGAGGCG
GCCGTAAATGCCATCTGAGGCTTTAAAATCCGTAGTCGTTCGGTGCCGGG
AAATCCTTGATACTGCCAGCGTCCCTTCCAGGAGCCCGAAGACCCTTCTG
TTCCTCAACGGAAATCCTGAGCTTCGGGAGTACTCAGATGGGATTCACTT
TCCTGAATCTTCGCTCCACTTAGTGCCCTCCATGCGCACGGATCGTAAGA
GGGGGAGTGGACAGGGGCCTGTGATGGGTGCCTCCGTACACAGTGTGGTG
CGTGCGagaaagaagcgggagggaaggatggaggaggttgtcTCAGTAGA
AAATCCCGTCCAAATACCACTTTCGATGCCTTTACCTATCTTCATATCTA
GGAGGCGGCCGTAA
back to top
Synonyms
Publications