EWM25122.1, cds5579 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25122.1
Unique Name	cds5579
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:361579..361590 +
Alignment location	CM002466.1:361661..362005 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25122.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g11.2931.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:361579..361590 +
CM002466.1	supercontig	CM002466.1:361661..362005 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM25122.1 vs. NCBI_GenBank
Match: gi|585106760|gb|EWM25122.1| (hypothetical protein Naga_100016g11 [Nannochloropsis gaditana])

HSP 1 Score: 234.958 bits (598), Expect = 3.095e-78
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query:    1 MPSEALKSVVVRCREILDTASVPSRSPKTLLFLNGNPELREYSDGIHFPESSLHLVPSMRTDRKRGSGQGPVMGASVHSVVRARKKREGRMEEVVSVENPVQIPLSMPLPIFISRRRP 118
            MPSEALKSVVVRCREILDTASVPSRSPKTLLFLNGNPELREYSDGIHFPESSLHLVPSMRTDRKRGSGQGPVMGASVHSVVRARKKREGRMEEVVSVENPVQIPLSMPLPIFISRRRP
Sbjct:    1 MPSEALKSVVVRCREILDTASVPSRSPKTLLFLNGNPELREYSDGIHFPESSLHLVPSMRTDRKRGSGQGPVMGASVHSVVRARKKREGRMEEVVSVENPVQIPLSMPLPIFISRRRP 118

The following BLAST results are available for this feature:

BLAST of EWM25122.1 vs. NCBI_GenBank

BLAST of EWM25122.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106760\|gb\|EWM25122.1\|	3.095e-78	100.00	hypothetical protein Naga_100016g11 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5593	rna5593	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications