rna5591, rna5591 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5591
Unique Name	rna5591
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1161
Alignment location	CM002466.1:356341..359151 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g14.2918.mrna
Orig protein id	gnl\|cribi\|Naga_100016g14.2918
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:356341..359151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g14	gene5403	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5591	rna5591-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25109.1	cds5577	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:356341..359151+
coding sequence from alignment at CM002466.1:356341..359151+

mRNA sequence

>rna5591 ID=rna5591|Name=rna5591|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp
ATGGCTTCGACGAAGAGCACCAAAAGTAGCTCCGAGACCCGAAACACAAA
TAGCGGGAATAGTAGTAGCAAATGCGTGACGAATAGCAGCTATGTAAAAA
AGCCCACACCAGAAAAAGTTGGCCGCAGGTTTGTCTTGACATATTACCCT
GTAATGTCAAAGTCTGCGGAGGATCTCATCAAGTTCTACAAAGAGGATTC
ATGCTTCTCGCACGTCCCTGAGACCGAAGAGGGCCAGGACAGTAAAGCTG
CCGTTGGGCTTGAGGAGATCCGGGCGCGTATCGAAGCCTTGAACCTGGGC
GGCGCCGTGGTGGACATTCGCAGCGTGGACGTGCAGCCCTCCAAAGACGG
GGCCGTGCTCGTCCTCGTTCAGGGTCTCATGCGGCGCCGGAGCGCGCCCG
CCCCCTCGGCCTTTGTCCAGACCTTCTTTTTGGCCCAGCAGGAGAACAAC
GAGGCGCACTACTACCTTCTGAACGACGTCTTCCGCGCCTGGCCAGAAAC
CCCCAGCGCGCACCCTCCCTCCTTCCCCTCTTCCCCCGGCCCCCCCACGC
CCGATCCCCCTCGCTCGGAGGCTTCTCCGGTGACGGCCTCGGCCGCCGCC
GAGAAAGAGGGGGCGATGGCAATCGCACGGGTCCAAGCAGAAGCCATGCG
GGGCCAGGAGGGCGTTGGTGTGCAAGAAAGGAAGGAGACGAAGGAGGAAG
AGGAGGAGGAGGCGGAGGAAGGGGCGGAGCTGGGGATGCACGAGGCAGAG
CTGACGGCCTTGCTGGTGGGGGTGGGGGGCGCGGGGACGGTCGTGCGAGA
CTACCGTGTTAACAAGAGCCAGTACTCGGTCTTTGTGGAGCTGGGGGATG
CGGAGAGCGTCGCGCGGGTTATGGGCGTGGTACGGGCGGATCCGAAGCGT
TTTCATCTACGGGACGGGCAGATCCCCCTCTTTCTGGACGTGAAACGGCC
GCCGGGGCAGTTGGGCCCTCACGGGGGGGCGTCGGGTCGACGGGGCGGCA
TTGGGCGAGGCCTGGGGGGGGGGGAGAGGGGCAGCCTTCTCAACAATGGC
AGCAACAGTAGAGGTGGGGGCAATGAGAATAGCGAACACAGCAAAAAGGG
TCGGCCGTTGGGGCCGGACGGGGCCGGGCGTGGCCGCCGCCGGGAGAAGG
GGGAAAAGTAG

protein sequence of rna5591

>rna5591-protein ID=rna5591-protein|Name=rna5591|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MCAGRLFCHRLGVCLASSGQTFPPSRCILLCGMLAPAHEHYYPFFQCTPL
LVRAGADSLTVIHASFSDRAVGPRGMSEIDSLFSALGETGDVDADLSILE
ALCGLEGVDASAAAAAAVEEEQSDDDEDDSFDGEGQPRKKRARRTRTELN
EIEKQRTRRINEQIQSLRSLLEASGLNTKKDKFSILKNTTEYLKKLKLLL
NKSQAQIQALAANRRAAAATAAAAKAAAGAAPTQASTSIMPVSPGNALGD
TKYYVEVDSNAGKESSNGSLPSGPALGMMIQRPPIAPGTLVEAGSWAPNK
KSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFD
LTPAEDCQELMGIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRK
ASGEPVFFQCAVLPLEDYPMASKSVTHDASSVPDDGNAIAGPAGEGEGYL
ALEDRVETSEANALLQPPQQQLEHERQEMPCETEKQRVMESALDPALDSG
NAYLQVRDDGETSLDTK

mRNA from alignment at CM002466.1:356341..359151+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5591 ID=rna5591|Name=rna5591|organism=Nannochloropsis gaditana|type=mRNA|length=2811bp|location=Sequence derived from alignment at CM002466.1:356341..359151+ (Nannochloropsis gaditana)
GCAGACATACGACGGAAAGCCTACGAAAACTTACCACCCTGCTATGTACA
GCAAGTTTTACACAAATCACACGCGCATGCCTGAAAATGTGTGCTGGGCG
CCTGTTTTGCCACCGACTCGGGGTGTGTCTTGCGAGCTCAGGGCAGacgt
tccccccctctcgttGCATTCTTCTATGCGGGATGCTCGCGCCTGCTCAC
GAGCACTATTACCCATTCTTCCAGTGCACTCCCTTACTGGTACGTGCTGG
CGCCGACTCACTCACGGTAATCCATGCTTCATTTTCCGACAGAGCAGTGG
GTCCAAGGGGCATGTCGGAGATTGACAGCCTGTTCAGTGCGCTCGGAGAG
ACGGGCGATGTGGACGCAGGTGAGAGGAGAACATGGAATCGGCAAAGCGG
AGCTTCATAAGTCCTCTCCCAAAATTTGCGAGGAGTTCAGTAGCTCAGAC
TATGACCTAAATCTCGTAAATTTCGTCTGCAGTATCCTATTTCAGTGTCC
ATATTTCTCTCTTTGTCCCTGATTTCTTCGATtctcatcctttcccttAA
AGATCTGAGCATTCTGGAGGCCCTTTGTGGTCTTGAGGGCGTTGAtgcct
ctgccgccgctgccgccgctgttGAAGAAGAGCAATCGGACGATGATGAG
GACGACTCTTTcgatggagaagggcagCCGCGAAAAAAGCGGGCACGGCG
GACGCGTACAGAACTCAATGAAATTGAAAAGCAGCGGACCCGTCGAATCA
ACGAGCAGATCCAGTCGTTGCGCTCTCTTCTCGAGGCTTCAGGTTTAAAC
ACCAAAAAGGACAAGTTTTCAATCTTAAAGAAGTGCGTGACTGGGGGGAA
GCAGAGACGAGATGTCAGGCAGCACGTTCTGTGTTTTCCATGAAAAAAGG
TGCCTCGTTGAGAAATTTATGGTGCCCAGGGAATCTAACTGTGTTACACT
ACCCCACGACAGTACCACGGAATACTTAAAGAAGCTTAAACTGCTTCTAA
ATAAATCGCAAGCTCAAATTCAAGCGCTGGCAGCCAACCGGAGGGCAGCC
GCCGCGACAGCCGCAGCAGCTAAAGCCGCAGCAGGTGCAGCGCCCACTCA
GGCCTCGACGTCCATCATGCCAGTATCGCCGGGAAATGCGCTGGGAGACA
CGAAGTACTACGTGGAAGTAGACTCGAacgcggggaaagagagcagcAAC
GGCTCGTTGCCCTCCGGGCCAGCTCTGGGGATGATGATCCAGCGGCCCCC
CATCGCCCCCGGCACCCTGGTCGAGGCGGGGTCGTGGGCGCCGAACAAGA
AGAGCGCCGATTATGCGCTCATGTTCCAGAATGCCTCCATCGCCATGGCG
GTCGCCAGTCTAGACGGGAAATTCGTCGACTGCAACTCGGCCTTCTCCAT
TATATCCGGGTATTCGAACGGAGAAGTCCTGCAGCGCTCTGTGTTTGACT
TGACCCCGGCGGAGGACTGTCAGGAGCTGATGGGCATCGTGGGCAAGATG
ATGGAGTCGCCCGCTGAGTCCGCGAAACATTTTTGGAAGCGCTGCTGCTT
CGAAAACCGCGACTGCCACTGCTTCGTCTCCATGTGGCTGGTCCGCAAGG
CTTCAGGCGAGCCGGTCTTCTTCCAGTGCGCCGTCTTGCCTCTGGAAGAC
TACCCCATGGCCTCCAAATCCGTCACTCACGacgcctcctctgtccccga
TGACGGGAACGCTATTGCGGGaccggcgggggagggggagggctaCCTGG
CATTGGAGGATCGTGTGGAAACCAGCGAGGCAAATGCCCTTTTGCAACCG
CCACAGCAGCAACTCGAGCACGAGCGGCAAGAGATGCCGTGCGAGACCGA
GAAACAAAGAGTCATGGAATCTGCACTGGACCCGGCGCTGGATTCTGGAA
ACGCTTATTTGCAGGTACGCGACGACGGCGAGACCTCTCTGGACACAAAG
TAGAAGGAGGCGTTGaagtgaaggggaagagggctctgaggcgagggaag
aggacggagcaGAATtgcaagaaggaaggacccactagaggatgaagagg
aaagataGTCGGGGCACATGGTCGTGCCTCACGTTTCAAGCGCCATAAAA
GGGGTCTCGCCCTCACTTTCATGTATGTATGTATAAGGAGACAAACAGGC
TGCGAAAAGGCAGTACTgatgaaaaaagggagaTCGAGTCTTCAACGAAA
GGTATGGGTGCCATGGTTTAGAGAAAATTTAACCATGTCGTGACTAAAAA
GCTTGAGTGGCAGCAAGCTTCGCTGACATGAGGCCGCAAAGCCTTCCAAG
GGGTCGCACCGTGAGAAAATCATCAGACGCCCAAAGCAGATTGATGAAAA
ACGGGGACTTAATGGAGCGAAGGGTTTCATTGAAGTTTGAATGGCATCAT
CGAAAGTTGAACGCTTTAATTGAAATGTAATGtgtgaaaggaaagacggC
GGGAAAGCTGGGCTGGCCGTGGGCGGTGACAGGGCTGAGCGAGTGCGCGA
AGGGGAGCGGTCCACGGCTGCTGAATAGTGAGGTGTATGGATCAGCACGC
GGGTCTTGACTTGATGATGTATTTATTTCAATCTGTACTTGAGCATGACG
GAAATTACTGCAGGACTTGCAAGGCGACCGAGTTCCCCCTAGATGTGGGT
TAGACGTCTGGATgcgaaggaggcgggcagTGAAGTGCGATCGCGTGGTA
TTTTCGCGTGCCATGAGGGGGTGAGGTGCTGCTACACACGAGGACCCGAC
ATCGGGCGAGGCGTTGTGCAGCaacgaaagaaaaaaacaCACGCAAGAAT
TCCTTACATGC

Coding sequence (CDS) from alignment at CM002466.1:356341..359151+

>rna5591 ID=rna5591|Name=rna5591|organism=Nannochloropsis gaditana|type=CDS|length=4662bp|location=Sequence derived from alignment at CM002466.1:356341..359151+ (Nannochloropsis gaditana)
ATGTGTGCTGGGCGCCTGTTTTGCCACCGACTCGGGGTGTGTCTTGCGAG
CTCAGGGCAGacgttccccccctctcgttGCATTCTTCTATGCGGGATGC
TCGCGCCTGCTCACGAGCACTATTACCCATTCTTCCAGTGCACTCCCTTA
CTGGTACGTGCTGGCGCCGACTCACTCACGGTAATCCATGCTTCATTTTC
CGACAGAGCAGTGGGTCCAAGGGGCATGTCGGAGATTGACAGCCTGTTCA
GTGCGCTCGGAGAGACGGGCGATGTGGACGCAGATCTGAGCATTCTGGAG
GCCCTTTGTGGTCTTGAGGGCGTTGAtgcctctgccgccgctgccgccgc
tgttGAAGAAGAGCAATCGGACGATGATGAGGACGACTCTTTcgatggag
aagggcagCCGCGAAAAAAGCGGGCACGGCGGACGCGTACAGAACTCAAT
GAAATTGAAAAGCAGCGGACCCGTCGAATCAACGAGCAGATCCAGTCGTT
GCGCTCTCTTCTCGAGGCTTCAGGTTTAAACACCAAAAAGGACAAGTTTT
CAATCTTAAAGAATACCACGGAATACTTAAAGAAGCTTAAACTGCTTCTA
AATAAATCGCAAGCTCAAATTCAAGCGCTGGCAGCCAACCGGAGGGCAGC
CGCCGCGACAGCCGCAGCAGCTAAAGCCGCAGCAGGTGCAGCGCCCACTC
AGGCCTCGACGTCCATCATGCCAGTATCGCCGGGAAATGCGCTGGGAGAC
ACGAAGTACTACGTGGAAGTAGACTCGAacgcggggaaagagagcagcAA
CGGCTCGTTGCCCTCCGGGCCAGCTCTGGGGATGATGATCCAGCGGCCCC
CCATCGCCCCCGGCACCCTGGTCGAGGCGGGGTCGTGGGCGCCGAACAAG
AAGAGCGCCGATTATGCGCTCATGTTCCAGAATGCCTCCATCGCCATGGC
GGTCGCCAGTCTAGACGGGAAATTCGTCGACTGCAACTCGGCCTTCTCCA
TTATATCCGGGTATTCGAACGGAGAAGTCCTGCAGCGCTCTGTGTTTGAC
TTGACCCCGGCGGAGGACTGTCAGGAGCTGATGGGCATCGTGGGCAAGAT
GATGGAGTCGCCCGCTGAGTCCGCGAAACATTTTTGGAAGCGCTGCTGCT
TCGAAAACCGCGACTGCCACTGCTTCGTCTCCATGTGGCTGGTCCGCAAG
GCTTCAGGCGAGCCGGTCTTCTTCCAGTGCGCCGTCTTGCCTCTGGAAGA
CTACCCCATGGCCTCCAAATCCGTCACTCACGacgcctcctctgtccccg
aTGACGGGAACGCTATTGCGGGaccggcgggggagggggagggctaCCTG
GCATTGGAGGATCGTGTGGAAACCAGCGAGGCAAATGCCCTTTTGCAACC
GCCACAGCAGCAACTCGAGCACGAGCGGCAAGAGATGCCGTGCGAGACCG
AGAAACAAAGAGTCATGGAATCTGCACTGGACCCGGCGCTGGATTCTGGA
AACGCTTATTTGCAGGTACGCGACGACGGCGAGACCTCTCTGGACACAAA
GTAGATGTGTGCTGGGCGCCTGTTTTGCCACCGACTCGGGGTGTGTCTTG
CGAGCTCAGGGCAGacgttccccccctctcgttGCATTCTTCTATGCGGG
ATGCTCGCGCCTGCTCACGAGCACTATTACCCATTCTTCCAGTGCACTCC
CTTACTGGTACGTGCTGGCGCCGACTCACTCACGGTAATCCATGCTTCAT
TTTCCGACAGAGCAGTGGGTCCAAGGGGCATGTCGGAGATTGACAGCCTG
TTCAGTGCGCTCGGAGAGACGGGCGATGTGGACGCAGATCTGAGCATTCT
GGAGGCCCTTTGTGGTCTTGAGGGCGTTGAtgcctctgccgccgctgccg
ccgctgttGAAGAAGAGCAATCGGACGATGATGAGGACGACTCTTTcgat
ggagaagggcagCCGCGAAAAAAGCGGGCACGGCGGACGCGTACAGAACT
CAATGAAATTGAAAAGCAGCGGACCCGTCGAATCAACGAGCAGATCCAGT
CGTTGCGCTCTCTTCTCGAGGCTTCAGGTTTAAACACCAAAAAGGACAAG
TTTTCAATCTTAAAGAATACCACGGAATACTTAAAGAAGCTTAAACTGCT
TCTAAATAAATCGCAAGCTCAAATTCAAGCGCTGGCAGCCAACCGGAGGG
CAGCCGCCGCGACAGCCGCAGCAGCTAAAGCCGCAGCAGGTGCAGCGCCC
ACTCAGGCCTCGACGTCCATCATGCCAGTATCGCCGGGAAATGCGCTGGG
AGACACGAAGTACTACGTGGAAGTAGACTCGAacgcggggaaagagagca
gcAACGGCTCGTTGCCCTCCGGGCCAGCTCTGGGGATGATGATCCAGCGG
CCCCCCATCGCCCCCGGCACCCTGGTCGAGGCGGGGTCGTGGGCGCCGAA
CAAGAAGAGCGCCGATTATGCGCTCATGTTCCAGAATGCCTCCATCGCCA
TGGCGGTCGCCAGTCTAGACGGGAAATTCGTCGACTGCAACTCGGCCTTC
TCCATTATATCCGGGTATTCGAACGGAGAAGTCCTGCAGCGCTCTGTGTT
TGACTTGACCCCGGCGGAGGACTGTCAGGAGCTGATGGGCATCGTGGGCA
AGATGATGGAGTCGCCCGCTGAGTCCGCGAAACATTTTTGGAAGCGCTGC
TGCTTCGAAAACCGCGACTGCCACTGCTTCGTCTCCATGTGGCTGGTCCG
CAAGGCTTCAGGCGAGCCGGTCTTCTTCCAGTGCGCCGTCTTGCCTCTGG
AAGACTACCCCATGGCCTCCAAATCCGTCACTCACGacgcctcctctgtc
cccgaTGACGGGAACGCTATTGCGGGaccggcgggggagggggagggcta
CCTGGCATTGGAGGATCGTGTGGAAACCAGCGAGGCAAATGCCCTTTTGC
AACCGCCACAGCAGCAACTCGAGCACGAGCGGCAAGAGATGCCGTGCGAG
ACCGAGAAACAAAGAGTCATGGAATCTGCACTGGACCCGGCGCTGGATTC
TGGAAACGCTTATTTGCAGGTACGCGACGACGGCGAGACCTCTCTGGACA
CAAAGTAGATGTGTGCTGGGCGCCTGTTTTGCCACCGACTCGGGGTGTGT
CTTGCGAGCTCAGGGCAGacgttccccccctctcgttGCATTCTTCTATG
CGGGATGCTCGCGCCTGCTCACGAGCACTATTACCCATTCTTCCAGTGCA
CTCCCTTACTGGTACGTGCTGGCGCCGACTCACTCACGGTAATCCATGCT
TCATTTTCCGACAGAGCAGTGGGTCCAAGGGGCATGTCGGAGATTGACAG
CCTGTTCAGTGCGCTCGGAGAGACGGGCGATGTGGACGCAGATCTGAGCA
TTCTGGAGGCCCTTTGTGGTCTTGAGGGCGTTGAtgcctctgccgccgct
gccgccgctgttGAAGAAGAGCAATCGGACGATGATGAGGACGACTCTTT
cgatggagaagggcagCCGCGAAAAAAGCGGGCACGGCGGACGCGTACAG
AACTCAATGAAATTGAAAAGCAGCGGACCCGTCGAATCAACGAGCAGATC
CAGTCGTTGCGCTCTCTTCTCGAGGCTTCAGGTTTAAACACCAAAAAGGA
CAAGTTTTCAATCTTAAAGAATACCACGGAATACTTAAAGAAGCTTAAAC
TGCTTCTAAATAAATCGCAAGCTCAAATTCAAGCGCTGGCAGCCAACCGG
AGGGCAGCCGCCGCGACAGCCGCAGCAGCTAAAGCCGCAGCAGGTGCAGC
GCCCACTCAGGCCTCGACGTCCATCATGCCAGTATCGCCGGGAAATGCGC
TGGGAGACACGAAGTACTACGTGGAAGTAGACTCGAacgcggggaaagag
agcagcAACGGCTCGTTGCCCTCCGGGCCAGCTCTGGGGATGATGATCCA
GCGGCCCCCCATCGCCCCCGGCACCCTGGTCGAGGCGGGGTCGTGGGCGC
CGAACAAGAAGAGCGCCGATTATGCGCTCATGTTCCAGAATGCCTCCATC
GCCATGGCGGTCGCCAGTCTAGACGGGAAATTCGTCGACTGCAACTCGGC
CTTCTCCATTATATCCGGGTATTCGAACGGAGAAGTCCTGCAGCGCTCTG
TGTTTGACTTGACCCCGGCGGAGGACTGTCAGGAGCTGATGGGCATCGTG
GGCAAGATGATGGAGTCGCCCGCTGAGTCCGCGAAACATTTTTGGAAGCG
CTGCTGCTTCGAAAACCGCGACTGCCACTGCTTCGTCTCCATGTGGCTGG
TCCGCAAGGCTTCAGGCGAGCCGGTCTTCTTCCAGTGCGCCGTCTTGCCT
CTGGAAGACTACCCCATGGCCTCCAAATCCGTCACTCACGacgcctcctc
tgtccccgaTGACGGGAACGCTATTGCGGGaccggcgggggagggggagg
gctaCCTGGCATTGGAGGATCGTGTGGAAACCAGCGAGGCAAATGCCCTT
TTGCAACCGCCACAGCAGCAACTCGAGCACGAGCGGCAAGAGATGCCGTG
CGAGACCGAGAAACAAAGAGTCATGGAATCTGCACTGGACCCGGCGCTGG
ATTCTGGAAACGCTTATTTGCAGGTACGCGACGACGGCGAGACCTCTCTG
GACACAAAGTAG

Synonyms

Publications