rna5589, rna5589 (mRNA) Nannochloropsis gaditana

Overview
Namerna5589
Unique Namerna5589
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length891
Alignment locationCM002466.1:352072..353397 +

Link to JBrowse

Properties
Property NameValue
ProductLamin Tail domain protein
Orig transcript idgnl|cribi|Naga_100016g16.2927.mrna
Orig protein idgnl|cribi|Naga_100016g16.2927
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:352072..353397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g16gene5401Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5589rna5589-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25118.1cds5575Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5589 ID=rna5589|Name=rna5589|organism=Nannochloropsis gaditana|type=mRNA|length=891bp
ATGTCACACGACAGCGGCAGGGATAGAAGGGGAGGAGGTCAGAGAGAAAA
CATAGAAATAGCGCTGCTAAAGCTAGAAGTAGAGCGTCTACGTTCCCTAG
TTCCCACTTATCGAAGAAGACCGAAGCTTCTAATTCTCGACCTGAATGGA
CTGCTCGTGCACCGAGTCTTCGTTGGGGAGGGCCCTAGGGCAGATGCAGA
AGGCGCTCTACCAAGAGTTACGACAACATGGTGCCTCAATAGCTGTTTGG
TTTACAAGCGCCCTTACGTGAAAGACTTTCTCAGATTCTGCTTGGATAAC
TTTTTCGTAGGGGTGTGGACTACGGCGTCGGCAATCAATGCAACACCGCT
GTTGAAGGGTCTCCTGCCCGAGGAGGATGTGGCCCGATTGGCTTTCATTT
GGGACGGCAAAAGGTGCACATACAACGGTGAGACTGATCCGGCAAAGCCC
GGGAAACCAATTGCTTTCAAGGAGTTGCGGCGCTTATGGGAAAGCAAGGA
CGTTGCCGGACTGTTCGGCCCCAGCAACACCCTTATGATCGACGACTCGC
GCTACAAGGCCTCCCTCAACCCCCCCCACACGGCCATCCACCCCCCGGCC
TGGGACGATCCTGATGCCCATGCCTCAGACGATGCCCTCGGTCCTTTAGG
GAATATTCGTCTTTATTTGCAGGCTCTTCTTGATAGTGAGGTGTCTGTTC
CCGATTTTGTCAGTGCTCGACCCTTTGAGGCCTTCCAAGGCGCCCGTGCC
GCTACTCGTCTCGTTTCTGACGCCAGCGCCATGCTAGATGAAGGCAATAG
TGTACGGGAATCGGAATCTTGTGCACCATTGAACGAGGAAGATGAAGACG
GTGAAGATGAGATCGTGCTTGCGCCGGGGGTGAGCAGATAG
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protein sequence of rna5589

>rna5589-protein ID=rna5589-protein|Name=rna5589|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITI
SNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVE
EEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTV
NGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQG
SRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRV
FALVADRLDSASLLAVLMTGLVETGGPLYGPNPVHRVRLGLGMLLIEVLA
FWFEVLVEGSTRLAAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHL
GRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAY
LPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL
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mRNA from alignment at CM002466.1:352072..353397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5589 ID=rna5589|Name=rna5589|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp|location=Sequence derived from alignment at CM002466.1:352072..353397+ (Nannochloropsis gaditana)
ATGAGGAGGCTCATTGAAATCCCTTGGTTAGACGAGTGTGATCAAGATGG
TACCTCAGCGCGTTGCCAAAATCCCCGACGGCGCTCCATATTGTACAGGT
CGCCTCCATACATCAGCGACGTGGACGTAAAGCGGGAGATAATAACCATC
TCCAACCCTGAGTCCGTCCCGGTCGACTTGTCGGGGCATTCTTTGTGCGA
CAAAGGACAACATCACAGGTATGAATTTGAGGAAGGCTACACTCTTGCCC
CGGGTGCAGAGTTGCACGTGTACTGCGCACCAGGCAAgtacggcgtggag
gaagaagaacggCCGGGGGAACTGCAGATACTGCTGTGGACGACGCGGGA
GGGCAGACCTCGGCGTCGCGAGGTATTGAatcaagaaggagacagagtCA
CACTCATCGATCAGAATGGAATGGAGATCGCAGCCCTAGAAGTGACGGTA
AATGGAgatgacgaagaagaggagggcgagcgggagaagcgggGAACGGG
GAAGGCAGAAAGGCGAGAGGAAATCAAGCGGTTGTATTTGTATCGTCTTG
AAGTGCTTCAGTTGAAGTACGCGAAGAGTGTGGTGACCTGGCTCCAAGGC
TCTCGATTGGCCCTTATGGTGCTGGCCTTCATCTTCGTGCTCCTGAACGA
CCTTCACTCCTACGTCCTCCTGGAGGTCGGGGGCTTCGCGCTGGACATGG
CCGCGCGGTACCTGGACCCCGTGCGTCTGCCCCGCAGCCGCCAGCGTGTC
TTCGCCCTGGTGGCGGACCGGTTGGATTCCGCGAGCCTGCTGGCGGTCCT
GATGACGGGCCTGGTCGAGACGGGGGGCCCCCTGTATGGGCCCAACCCCG
TGCACCGGGTCCGCCTGGGGTTGGGCATGCTCCTGATCGAGGTCCTGGCC
TTCTGGTTCgaggtgctggtggagggttCAACGCGCCTGGCGGCAGCGGA
TGCGGTGGCGCCGTACTGGAGGCAGGGTCCGGCGccggcaggagaggagg
aggtgtcgGTCCAGACGGGCCCGTATCGGAAGTGGCTTCGGCAGCATCTG
GGCCGGTGCCCCGCGCTCATCACGTTCGCGACGGGGGGGAACCACCTCTT
CCTGGTCTTGGCCGTCGTCCGCCTGGCCCATGCGCAGGCGGGCGGCTCGG
AGGGCCTGGTGGTTCGGGCGGTCTCGGTAGCGAGTCGCATCATGGCCTAC
CTCCCCTTACCGCGGGCGATCGTCAGCAACTGGCAGTTTCTCCTGATCGC
CGTGTGCCTGTCGGCCATGTATCGATGCATCCTGATATGGGCTGAGCTGC
TTGACCTGCTGGAGAGCAAGTTGTGA
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Coding sequence (CDS) from alignment at CM002466.1:352072..353397+

>rna5589 ID=rna5589|Name=rna5589|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at CM002466.1:352072..353397+ (Nannochloropsis gaditana)
ATGAGGAGGCTCATTGAAATCCCTTGGTTAGACGAGTGTGATCAAGATGG
TACCTCAGCGCGTTGCCAAAATCCCCGACGGCGCTCCATATTGTACAGGT
CGCCTCCATACATCAGCGACGTGGACGTAAAGCGGGAGATAATAACCATC
TCCAACCCTGAGTCCGTCCCGGTCGACTTGTCGGGGCATTCTTTGTGCGA
CAAAGGACAACATCACAGGTATGAATTTGAGGAAGGCTACACTCTTGCCC
CGGGTGCAGAGTTGCACGTGTACTGCGCACCAGGCAAgtacggcgtggag
gaagaagaacggCCGGGGGAACTGCAGATACTGCTGTGGACGACGCGGGA
GGGCAGACCTCGGCGTCGCGAGGTATTGAatcaagaaggagacagagtCA
CACTCATCGATCAGAATGGAATGGAGATCGCAGCCCTAGAAGTGACGGTA
AATGGAgatgacgaagaagaggagggcgagcgggagaagcgggGAACGGG
GAAGGCAGAAAGGCGAGAGGAAATCAAGCGGTTGTATTTGTATCGTCTTG
AAGTGCTTCAGTTGAAGTACGCGAAGAGTGTGGTGACCTGGCTCCAAGGC
TCTCGATTGGCCCTTATGGTGCTGGCCTTCATCTTCGTGCTCCTGAACGA
CCTTCACTCCTACGTCCTCCTGGAGGTCGGGGGCTTCGCGCTGGACATGG
CCGCGCGGTACCTGGACCCCGTGCGTCTGCCCCGCAGCCGCCAGCGTGTC
TTCGCCCTGGTGGCGGACCGGTTGGATTCCGCGAGCCTGCTGGCGGTCCT
GATGACGGGCCTGGTCGAGACGGGGGGCCCCCTGTATGGGCCCAACCCCG
TGCACCGGGTCCGCCTGGGGTTGGGCATGCTCCTGATCGAGGTCCTGGCC
TTCTGGTTCgaggtgctggtggagggttCAACGCGCCTGGCGGCAGCGGA
TGCGGTGGCGCCGTACTGGAGGCAGGGTCCGGCGccggcaggagaggagg
aggtgtcgGTCCAGACGGGCCCGTATCGGAAGTGGCTTCGGCAGCATCTG
GGCCGGTGCCCCGCGCTCATCACGTTCGCGACGGGGGGGAACCACCTCTT
CCTGGTCTTGGCCGTCGTCCGCCTGGCCCATGCGCAGGCGGGCGGCTCGG
AGGGCCTGGTGGTTCGGGCGGTCTCGGTAGCGAGTCGCATCATGGCCTAC
CTCCCCTTACCGCGGGCGATCGTCAGCAACTGGCAGTTTCTCCTGATCGC
CGTGTGCCTGTCGGCCATGTATCGATGCATCCTGATATGGGCTGAGCTGC
TTGACCTGCTGGAGAGCAAGTTGTGA
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Synonyms
Publications