EWM25118.1, cds5575 (CDS) Nannochloropsis gaditana

Overview
NameEWM25118.1
Unique Namecds5575
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:352072..353397 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25118.1
ProductLamin Tail domain protein
Orig transcript idgnl|cribi|Naga_100016g16.2927.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:352072..353397 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001322Lamin_tail_dom
Homology
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|585106756|gb|EWM25118.1| (Lamin Tail domain protein [Nannochloropsis gaditana])

HSP 1 Score: 890.182 bits (2299), Expect = 0.000e+0
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query:    1 MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETGGPLYGPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTRLAAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL 441
            MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETGGPLYGPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTRLAAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL
Sbjct:    1 MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETGGPLYGPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTRLAAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL 441          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|299471389|emb|CBN79343.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 4.876e-17
Identity = 65/188 (34.57%), Postives = 96/188 (51.06%), Query Frame = 0
Query:   31 LYRSPPYISDVDVKREIITISNPESV--PVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKY---GVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFV 213
            L+R PP+I+  D++ E +TI NP SV    +L+G++L D+ Q H Y F E + L     L +YC PGK+    +    +P     LLW  ++G  RR+EV+   G+ + L D  G E+A LEV   G D EE        T    +R ++  L   R  VL L Y + V T L  +R+ +    F+ V
Sbjct:   43 LFRPPPFIAHADLEAETVTIRNP-SVWRGANLAGYTLTDRLQRHTYHFPERFVLRARTSLTLYCCPGKFSEGALHNLPQP----FLLWHNQDGSLRRKEVMENSGETLVLSDAKGNEVAVLEVP--GTDGEETSR-----TLPGVKRSQVLAL---RTLVLSLCYLRLVCTGLAAARVTVHPDVFLLV 215          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|325191781|emb|CCA25639.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 81.2629 bits (199), Expect = 5.304e-13
Identity = 59/197 (29.95%), Postives = 89/197 (45.18%), Query Frame = 0
Query:    3 RLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQ-ILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGD-DEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTW 197
            R +  P LD     GT   C     +S++ R   YIS VDV+++ I I+NP    VDLSG+ +        + F   YTL  G E+ V+CAPG   ++ +     LQ  L WTT  G  R             L+D   +EIA++ +  NG+        R  RG    +   EI R    R++  +++ A + + W
Sbjct:    7 RRVRYPRLDRKVARGTHQICH----QSVMQRV--YISRVDVQKQWIVIANPTDGSVDLSGYIITSTDGRQTFRFPRKYTLLSGDEVTVWCAPGWIALDTDN---LLQPYLFWTTENGALRDTPFFTSSSSEAILLDSFMIEIASVRIDSNGNLSFRVRHSRSIRGMF-IQAMHEIPRCLGLRMKNFKVQSAHTHLRW 193          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|635361843|emb|CCI49283.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 75.8702 bits (185), Expect = 3.030e-11
Identity = 53/197 (26.90%), Postives = 88/197 (44.67%), Query Frame = 0
Query:    3 RLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQ-ILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGD-DEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTW 197
            R +  P LD     GT   C     +S++ R   YI+ VDV+++ I I+NP    VDLSG+ +        + F   Y L  G E+ V+CAPG   ++ +     LQ  L WT   G  R         +   L+D   +EIA++ +  NG+        R  +G    +   E+ R   +R++  +++   + + W
Sbjct:    7 RRVRYPRLDRKVARGTHQICH----QSVMQRV--YIARVDVQKQWIVIANPTDGSVDLSGYIITSTDGRQTFRFPRKYILLSGDEVTVWCAPGSIELDTDN---LLQPYLFWTMENGALRHIPFFTSTSNEAILLDSFMIEIASVRIDSNGNLSYRVRHSRSIKGMF-VQAMHEVPRCLGFRMKTFKVQSTHTHLRW 193          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|953501492|emb|CEG37493.1| (Lamin Tail Domain [Plasmopara halstedii])

HSP 1 Score: 73.9442 bits (180), Expect = 1.622e-10
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQ-ILLWTTREGRPRRREVLNQE-GDRVTLIDQNGMEIAALEVTVNGDDE 155
            YIS  +V ++ + +SNP    ++L+G +L   G    Y F   YTL PG E+ ++C+PG+  ++E+     LQ  L WT  +G  R +        + V L+D   +E+A++ VTV+G  E
Sbjct:   35 YISRANVSKQWVVVSNPSEACINLTGFNLSCSGCDDVYCFPFNYTLLPGDEVTIWCSPGRLKLDED---NLLQPYLFWTQPDGSLRHKSFFTSSRANDVVLLDPFLVEVASIRVTVDGRRE 152          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|566022261|gb|ETI45172.1| (hypothetical protein F443_10153 [Phytophthora parasitica P1569])

HSP 1 Score: 72.0182 bits (175), Expect = 6.359e-10
Identity = 44/142 (30.99%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPG--KYGVEEEERPGELQILLWTTREGRPRRREVLN-QEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEI 175
            Y+S  D  ++ + +SNP    VD++G SL   G    + F   YTL PG E+ V+C+PG  K  V+   +P     L WT  +G  R     +  + + V L+D   +E+A++   VNGD ++E      +       R EI
Sbjct:   35 YVSRADSTKQWVVVSNPSEQSVDMTGFSLSCSGSSDVFHFPAKYTLLPGDEVTVWCSPGGLKLDVDNLLQP----YLFWTKADGSLRHEPFFSAAQANEVLLLDPLLIEVASIR--VNGDGKKEFRVLHCKSAHSRTLRSEI 170          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|570983190|gb|ETP43066.1| (hypothetical protein F442_10058 [Phytophthora parasitica P10297])

HSP 1 Score: 72.0182 bits (175), Expect = 6.768e-10
Identity = 44/142 (30.99%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPG--KYGVEEEERPGELQILLWTTREGRPRRREVLN-QEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEI 175
            Y+S  D  ++ + +SNP    VD++G SL   G    + F   YTL PG E+ V+C+PG  K  V+   +P     L WT  +G  R     +  + + V L+D   +E+A++   VNGD ++E      +       R EI
Sbjct:   35 YVSRADSTKQWVVVSNPSEQSVDMTGFSLSCSGSSDVFHFPAKYTLLPGDEVTVWCSPGGLKLDVDNLLQP----YLFWTKADGSLRHEPFFSAAQANEVLLLDPLLIEVASIR--VNGDGKKEFRVLHCKSAHSRTLRSEI 170          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|568017509|gb|ETL91686.1| (hypothetical protein L917_09764 [Phytophthora parasitica] >gi|568047924|gb|ETM44992.1| hypothetical protein L914_09819 [Phytophthora parasitica] >gi|570325880|gb|ETO73828.1| hypothetical protein F444_10250 [Phytophthora parasitica P1976])

HSP 1 Score: 72.0182 bits (175), Expect = 6.890e-10
Identity = 44/142 (30.99%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPG--KYGVEEEERPGELQILLWTTREGRPRRREVLN-QEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEI 175
            Y+S  D  ++ + +SNP    VD++G SL   G    + F   YTL PG E+ V+C+PG  K  V+   +P     L WT  +G  R     +  + + V L+D   +E+A++   VNGD ++E      +       R EI
Sbjct:   35 YVSRADSTKQWVVVSNPSEQSVDMTGFSLSCSGSSDVFHFPAKYTLLPGDEVTVWCSPGGLKLDVDNLLQP----YLFWTKADGSLRHEPFFSAAQANEVLLLDPLLIEVASIR--VNGDGKKEFRVLHCKSAHSRTLRSEI 170          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|675168715|ref|XP_008893242.1| (hypothetical protein PPTG_01621 [Phytophthora parasitica INRA-310] >gi|568106818|gb|ETN21448.1| hypothetical protein PPTG_01621 [Phytophthora parasitica INRA-310] >gi|570949724|gb|ETP14981.1| hypothetical protein F441_10094 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 72.0182 bits (175), Expect = 7.076e-10
Identity = 44/142 (30.99%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPG--KYGVEEEERPGELQILLWTTREGRPRRREVLN-QEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEI 175
            Y+S  D  ++ + +SNP    VD++G SL   G    + F   YTL PG E+ V+C+PG  K  V+   +P     L WT  +G  R     +  + + V L+D   +E+A++   VNGD ++E      +       R EI
Sbjct:   35 YVSRADSTKQWVVVSNPSEQSVDMTGFSLSCSGSSDVFHFPAKYTLLPGDEVTVWCSPGGLKLDVDNLLQP----YLFWTKADGSLRHEPFFSAAQANEVLLLDPLLIEVASIR--VNGDGKKEFRVLHCKSAHSRTLRSEI 170          
BLAST of EWM25118.1 vs. NCBI_GenBank
Match: gi|567959572|gb|ETK85141.1| (hypothetical protein L915_09934 [Phytophthora parasitica])

HSP 1 Score: 72.0182 bits (175), Expect = 7.076e-10
Identity = 44/142 (30.99%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   37 YISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPG--KYGVEEEERPGELQILLWTTREGRPRRREVLN-QEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEI 175
            Y+S  D  ++ + +SNP    VD++G SL   G    + F   YTL PG E+ V+C+PG  K  V+   +P     L WT  +G  R     +  + + V L+D   +E+A++   VNGD ++E      +       R EI
Sbjct:   35 YVSRADSTKQWVVVSNPSEQSVDMTGFSLSCSGSSDVFHFPAKYTLLPGDEVTVWCSPGGLKLDVDNLLQP----YLFWTKADGSLRHEPFFSAAQANEVLLLDPLLIEVASIR--VNGDGKKEFRVLHCKSAHSRTLRSEI 170          
The following BLAST results are available for this feature:
BLAST of EWM25118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106756|gb|EWM25118.1|0.000e+0100.00Lamin Tail domain protein [Nannochloropsis gaditan... [more]
gi|299471389|emb|CBN79343.1|4.876e-1734.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|325191781|emb|CCA25639.1|5.304e-1329.95conserved hypothetical protein [Albugo laibachii N... [more]
gi|635361843|emb|CCI49283.1|3.030e-1126.90unnamed protein product [Albugo candida][more]
gi|953501492|emb|CEG37493.1|1.622e-1033.06Lamin Tail Domain [Plasmopara halstedii][more]
gi|566022261|gb|ETI45172.1|6.359e-1030.99hypothetical protein F443_10153 [Phytophthora para... [more]
gi|570983190|gb|ETP43066.1|6.768e-1030.99hypothetical protein F442_10058 [Phytophthora para... [more]
gi|568017509|gb|ETL91686.1|6.890e-1030.99hypothetical protein L917_09764 [Phytophthora para... [more]
gi|675168715|ref|XP_008893242.1|7.076e-1030.99hypothetical protein PPTG_01621 [Phytophthora para... [more]
gi|567959572|gb|ETK85141.1|7.076e-1030.99hypothetical protein L915_09934 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5589rna5589Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications