rna5587, rna5587 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5587
Unique Name	rna5587
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3026
Alignment location	CM002466.1:349015..350281 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g18.2948.mrna
Orig protein id	gnl\|cribi\|Naga_100016g18.2948
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:349015..350281 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g18	gene5399	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5587	rna5587-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25139.1	cds5573	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:349015..350281-
coding sequence from alignment at CM002466.1:349015..350281-

mRNA sequence

>rna5587 ID=rna5587|Name=rna5587|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp
AGCACCGAACGTAGTTTCTCAAGTACTATTTTGACTGTTCCTCGTGTGAT
GGAGGCCATGAATGCGGTGTGGTCCGAGACGGGCGTTATCGTGGTGTGCT
CAATCTGCCGCGCCCATCTTCTCCTCTTCCATGCCATATGTCAAGCAAAG
ACCACGATGTAATCCTTAGATTTCCGGTGTATCCATACTCATCGACCCAC
TTCCTTTGCGATAGGAACCTTGCCCCCGCGCCTACGTGTGCGATTTATCT
GAATCGCGACTCGGGTTAGCAGGGGCGGGCTGAGTTCTCTTGGCGTTCGC
CTCTTCATGATGGAGGTGTCAGGCCTGACAAAGCTGCATTTAGATGTGGC
GGAGGGCCCGACCCCCCCAAGCATGGGCACACGTCCCCAATCTAACGAGA
TATTTTTCGCATCTACACGGTCAAGCTCCCGGGAGGGACGCCCCTTGCCG
GGCTTTCCGTCCACGACGGGAGGGCGCCGGCTCAAGGAATCATCCACGCG
TATCATCTACCTTTTGGCGCTACTCGCCATTGAAAGCCATGGCCCCTTCC
TACAGGACACACACCTCGCCAAAGACGCTGGACAGGCGTCGCGTCGACGC
CAGTGTAAGGAGAAAGCACAGCTGCAGACCGCGCGTCGCGAGAGGCTCTT
TCGCTATGTAGACTCCCTGTCGGACGTGCTGGCCCTGGACGACGACACGA
CCCTCCGGGCCATGGTGACGGCGGCCTGCCAGGACGGGGGCTTGGTCTCA
CTGCAGCAATCCTGTTCCGAGGCCGATGCGGAGGAGGATTGCTACGTGCT
GGTCCAGACGGTGCCCGAGCTCGTGGAGGACCTGGTGAGGGAGGTGGGCG
CGAGTTGTCCCTCTCCCTTGGACTCGGCCTGGCTGTCTCTCGTCGTGAAA
GTCCTCATCACCTACCAAGTCCGTGCCCACCTCTATGACGCCCGCGCCCG
CGCCAGCTTCCGCCGGCTCTCGCAGCGACTCGGTCCCGATCTGTTGCCGT
GGTCGGAGGTGGTGGCGATAGAGAGCGCCCTGGCGTTCGAGTGCTCCTCC
CTTTTGGCCAACGCCGGCGCCGACCCTCCTCGCTGCCAGAGTCTTGCACG
CTACGCCAAAGTTGCGTGCGCCGCCCTGGGGGGCGGGGCGCTGATGCTGT
ACACAGGCTCCGTGGCAGCGCCCTCCATCGCCGCGTCCCTGGTGGCTCTC
TGCACGGCGGGAGGGATGGGGCTCGGGCCTGCCGCGGCCGCAATCACGCA
GCAGCTGACCAGCAGCACGGCCACTTTGCTGTCGTACTGGGGCCTGACAT
CGGACCTGTGCATCTCCTCCTTCCTGGCCGTGACGGGGGTGGGCCTCACT
GGCTACAAAATGACACAACGCACGCGGGGCCTAACCGAGTTCCACTTCGT
GCCCCTCCATTCCTCCTTCCCTTTGCACAAGCGCGACGGGGAGGCACACG
CCTCTAAGCGGGGCACCGAGGAGTGTCAGCAGGCGCCGAGAGACGACAAC
GGGGCCGCTGCCTCTTCCTTCCGCGGCTCGCCTGGTCTCCCTGTCTTCAT
TTGCGTGCCCGGATGGGTAGAGCACGACCAGGACCCCCGCCGGGTCTGGG
GAGGGGATATGACTACGGTGTCCACCGTCTCACGAGAGGCGGGGGGCGGT
CGCGGGAAGGACACAGGCGGGAGGGGCGGGGAGGCGGAGGCTGGGTCGAG
GGAAAGGAAGGAGGCCGCAGGGGGGGGCGGGGAGTCGGAGGAGGAGGGGG
CTTCGATGGGGAAAAGCGTTTCGTCGGACGGGAGCTTGGGCAGCTGGGAG
GCGTTGGAGGTGGAGTCGAATGGGTGGTGGCGAGAGGTGGTGCCGGGAGG
GGAGGAGCACGTGCTGATCTGGGAGACCGCATTGCTGGGCCAGCTGCACC
GCGCCATGCGAGAGTTTGTTTGGCACGAGGCGTCTCGCTACGCCATCGAC
GAGGTGATCAAGCACACGGCTTTGGCGGGATTGACCTCTGCCGCCGCATT
GCCCATTTCCGTGCTGACCGCGGCCCAAAAACTGGACAGCCCCTGGCAGC
TGGCGGTGCTGCACGCACAAGAGGCCGGCGTACTGCTTGCCAACCTTTTG
GCCTTACGACCCCAAGGGTCGCGCCCGGTGACCCTCATGGGCTTCTCCAT
GGGCGCACGCGTCATTTTCCACTGCCTGGAGGCCCTGGCGAGCAAGGGGG
AAGCGGGCTTGGGCATAGTCGAGAATGCGGTCTTGCTGGGTTTGCCAATG
GGTCGGGCGTCGGAGAGGTGGCGGCAGGCGCTGGCGGTGGTGGCGGGGAG
GCTGGTGAACGGGTACTCGACCAGGGACTGGGTGTTGCAGTTCCTCTTCC
GCTCCAAAGCCTGGGAGCTGGGTCTGGCGGGGCTGGGGCCGGTGGAGGTG
GTGGGCGAGGGCGAGCGGCGGGTCGAGAATCTGGACTTGAGTGAGCTGGT
GCCCGGACATTTATCTTACCCAAAGGCCCTTCCCAACATCATGGCTCTCT
TGCGCTTGGAGGGGTAGAAACGGGGGGCTTACCGGCGGAGACGATGCGGT
GGGAGTCGGAAAAGGGCGGTGGAGGTGCGTCTACACATGTGGACAGGAGT
AATCATTGTACATGCGTAAGCGTGAGTTTGAAGTATTGCACTGTTGCCGG
CCTGCTCCATCTCAGTGCAAGGTAGCGAAGCGCTGGATTCCGGTGAGGTG
CTGAGGCGCAGATTTTGTCCTGTGGCCTTTGCATGATGCTTCTCAGGTGG
TGAGACGTCATTCGGTCTCAGGTCTGTGTGCAAGGGAACGGGGCAGCTTG
AAATGATGTAAATTTGTTGGTACGGGAGGTGGTGTGGAAATGTATGCAGC
AGCGGGTTGTTGACAACAGATGGAGCGGAGGGTCTCTCATCAGGCGCCCA
GCGGTTGACTGATACCGAGACGATCATCCGGGGAGAGTTGTATATCGGAA
GAGGAGCTTCAGGGAAGTATAGGCAGCCTGATAATGCACCCGTAAAAAAA
GAAAAATCCATGGAAGCGCTTTCACA

protein sequence of rna5587

>rna5587-protein ID=rna5587-protein|Name=rna5587|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MAASASSFDLERELARLSLDTNVYRGYIEGMMDDEDTGDLEERVEAVLAF
LGGATDEDLSGFAIDLKTHHQLKHAAEAARETSLIDADKAKERRRYEERL
EQDKKAAKTEQDRQAAELKSRTEGDRATMRGREAILNKYAFGDDVVDEDG
NPVGKPRGGKDDKSGAGEADVVLGALLGANSNKAQVEAAAKAMREKSKAE
HEKKVLREKELLLRDKMRKESEKRRTMKREKQRGCG

mRNA from alignment at CM002466.1:349015..350281-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5587 ID=rna5587|Name=rna5587|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp|location=Sequence derived from alignment at CM002466.1:349015..350281- (Nannochloropsis gaditana)
GCAAGAAACTACGTACCTCTACTTCTAGCTTTAGCAGCGCTATTTCTATG
TTTTCTCTCTGACCTCCTCCCCTTCTATCCCTGCCGCTGTCGTGTGACAT
GATACTTTAACAAATTTAAAGGTATGTATGAGTTGTGATTTTCTGTGATG
GTGGCACCGTACTCTGAATGCAGTCTGTCTAGGCGCAAGCAGGAGGTTAC
GAGACTCGACCATGAGGGAGAGAGAGACTTGTACCCCCCCATAATAACGC
TTCCTAAACTCACTGATATGTCATGACAAGCCGTGTATTTTACAATATAA
GCCACATTCCTGTATGACATTGCTTACGGCCACGCTGCCAGACCTTTGAC
AGGGTCGCAGCAGAATGGCTGCGAGTGCGAGTAGCTTCGACCTGGAAAGA
GAGCTTGCGCGTCTTTCCCTCGACACAAACGTCTACAGAGGCTATATTGA
GGGAATGATGGATGATGAGGACACTGGAGACCTGGAAGAGCGAGTAGAGG
CTGTGCTTGCGTTTTTAGGCGGCGCGACGGATGAGGACCTAAGTGGGTTT
GCGATTGACTTGAAAACCCACCATCAACTAAAACACGCGGCGGAGGCGGC
CAGGGAGACTAGCTTGATAGACGCAGATAAGGCAAAGGAAAGGCGGCGTT
ATGAAGAAAGACTTGAGCAAGACAAGAAAGCGGCGAAGACAGAGCAAGAC
AGACAAGCCGCGGAGCTTAAGTCTCGAACGGAAGGAGATCGTGCGACGAT
GCGGGGGCGAGAAGCTATTTTGAATAAATACGCGTTTGGAGACGACGTTG
TGGACGAAGATGGAAACCCGGTGGGTAAACCAAGGGGAGGAAAAGATGAT
AAGTCGGGTGCCGGCGAGGCGGATGTTGTTTTGGGTGCTTTACTAGGAGC
CAATTCAAACAAAGCTCAAGTGGAGGCCGCCGCGAAGGCAATGAGGGAGA
AGTCCAAGGCGGAGCACGAGAAGAAGGTGTTGAGAGAGAAGGTAAGCACC
CATCTGCATCGATGGAATTATGGACGAGTAGCTCACTTTCTGTCACTGAA
AGTCGATTCAAGGACCGCGAATCCTCTGTTTTCCCAGGCGTGCGTGAGGT
ACACTGCCTTTCACTATCTACGCTTCATCATTCCTATTATTTTGCCTACC
TAGGAACTCCTGCTGAGAGACAAGATGCGGAAGGAAAGTGAAAAGCGGCG
AACCATGAAGAGGGAGAAACAAAGAGGATGTGGATAAAGACATGGAAAAA
TAAGCAGGGTGAATTTG

Coding sequence (CDS) from alignment at CM002466.1:349015..350281-

>rna5587 ID=rna5587|Name=rna5587|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002466.1:349015..350281- (Nannochloropsis gaditana)
GAACTCCTGCTGAGAGACAAGATGCGGAAGGAAAGTGAAAAGCGGCGAAC
CATGAAGAGGGAGAAACAAAGAGGATGTGGATAAATGGCTGCGAGTGCGA
GTAGCTTCGACCTGGAAAGAGAGCTTGCGCGTCTTTCCCTCGACACAAAC
GTCTACAGAGGCTATATTGAGGGAATGATGGATGATGAGGACACTGGAGA
CCTGGAAGAGCGAGTAGAGGCTGTGCTTGCGTTTTTAGGCGGCGCGACGG
ATGAGGACCTAAGTGGGTTTGCGATTGACTTGAAAACCCACCATCAACTA
AAACACGCGGCGGAGGCGGCCAGGGAGACTAGCTTGATAGACGCAGATAA
GGCAAAGGAAAGGCGGCGTTATGAAGAAAGACTTGAGCAAGACAAGAAAG
CGGCGAAGACAGAGCAAGACAGACAAGCCGCGGAGCTTAAGTCTCGAACG
GAAGGAGATCGTGCGACGATGCGGGGGCGAGAAGCTATTTTGAATAAATA
CGCGTTTGGAGACGACGTTGTGGACGAAGATGGAAACCCGGTGGGTAAAC
CAAGGGGAGGAAAAGATGATAAGTCGGGTGCCGGCGAGGCGGATGTTGTT
TTGGGTGCTTTACTAGGAGCCAATTCAAACAAAGCTCAAGTGGAGGCCGC
CGCGAAGGCAATGAGGGAGAAGTCCAAGGCGGAGCACGAGAAGAAGGTGT
TGAGAGAGAAGGAACTCCTGCTGAGAGACAAGATGCGGAAGGAAAGTGAA
AAGCGGCGAACCATGAAGAGGGAGAAACAAAGAGGATGTGGATAAATGGC
TGCGAGTGCGAGTAGCTTCGACCTGGAAAGAGAGCTTGCGCGTCTTTCCC
TCGACACAAACGTCTACAGAGGCTATATTGAGGGAATGATGGATGATGAG
GACACTGGAGACCTGGAAGAGCGAGTAGAGGCTGTGCTTGCGTTTTTAGG
CGGCGCGACGGATGAGGACCTAAGTGGGTTTGCGATTGACTTGAAAACCC
ACCATCAACTAAAACACGCGGCGGAGGCGGCCAGGGAGACTAGCTTGATA
GACGCAGATAAGGCAAAGGAAAGGCGGCGTTATGAAGAAAGACTTGAGCA
AGACAAGAAAGCGGCGAAGACAGAGCAAGACAGACAAGCCGCGGAGCTTA
AGTCTCGAACGGAAGGAGATCGTGCGACGATGCGGGGGCGAGAAGCTATT
TTGAATAAATACGCGTTTGGAGACGACGTTGTGGACGAAGATGGAAACCC
GGTGGGTAAACCAAGGGGAGGAAAAGATGATAAGTCGGGTGCCGGCGAGG
CGGATGTTGTTTTGGGTGCTTTACTAGGAGCCAATTCAAACAAAGCTCAA
GTGGAGGCCGCCGCGAAGGCAATGAGGGAGAAGTCCAAGGCGGAGCACGA
GAAGAAGGTGTTGAGAGAGAAG

Synonyms

Publications