rna5585, rna5585 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5585
Unique Name	rna5585
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2214
Alignment location	CM002466.1:344479..346088 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosome recycling factor
Orig transcript id	gnl\|cribi\|Naga_100016g21.2912.mrna
Orig protein id	gnl\|cribi\|Naga_100016g21.2912
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:344479..346088 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g21	gene5397	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5585	rna5585-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25103.1	cds5571	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:344479..346088-
coding sequence from alignment at CM002466.1:344479..346088-

mRNA sequence

>rna5585 ID=rna5585|Name=rna5585|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp
CGTAAAGATTACTTTGGTGGAATAGGCATGCCACGTGTACAGTGTTTGTA
TTTATTCATGATTGAAACATCTGCCCGCTCGGGACCATCCGCTGCCTGTC
ACGCGTGAGCGACACGTCCAGGACCGTAATCGACAAACATCATGATTCTC
CTTATCAATCAAGCTCACTTTCTTGGGGCATCTCCCTACATCCAGGAGCA
GTACCCATCCATGGCGTCGTCCCGCCTGGTAATGGCCTCATTGCTGGGGC
GGAAAGGGCCTGCACGCCTGAGACCACCCGGGGCTACGGTCGCTGCTGCT
TGCCGAGGCCTGTCAACAGCTGCGGGCGCTTTGGCGGACAACGAGGTGGC
TCTCAGCATCTTGGCAGCGCCTGTGACTGCCATGGACGTTGGGAAGAAAA
ATCCAACCGGAGTGGAAGGTGTGGGTGTCGTGACCGCGGTTGGCAGCAAG
GTACGGGGATTTGCCGTCCATGACTGGGCGGTGCCGACGTCGGGATCCGT
GCCAACTTTTTGCAGCGCCGCCAAGGCCAAGGAAAATGAACTGGCCAAGG
TACCCTCTGACATCCCCGTGGAGTTTGCTGCATGCATGGGGACGGCATTA
ACGGCGCTCCGGCTTCTTGCTGGCCTCAAGAAGGGAGACTTTGTGCTACA
AGCGGACGCGGACTCGCCCGTGGGATTGGCGGTGGTGCAGATTGCGCAGG
CGCGCGGCGTAGGCACCATCAACATCGTGGTGGATGGGCCGGGTTTCTGG
GACAAGATCAGTCTCATCAAGGACTTGGGGGGGGACGTGGTTGTGAGCGA
CACTTACGCGAGGGAGGACCCCGGCTTTTCCAGCATCATGGGGGAATTGC
CGAAGCCGACGCTGGCTCTGGCAGCCACAGAGGCGGGCGTGGCTTTGGCC
AGCAAGTGTGGGGGAGGCGCGAAAGTGGTCAACCATAACACAGGAGGGTC
GGGCCTGCTGAAGGCGTCGGCGGCAGAGATCGAGGCCGCGGCTGGGCTTT
TCCGATCGGAGGCATTGCAGCTGTGGGTGGAGAGGCACCCCTACTCGGAC
CTATCCGTGGCCCTGAAAGAGGCCGCCGAGCCCTTCAAGACACGGAGGGT
CGTGCTGGTAATGAGCGAAGTCCCCAAGCCCCAGGTGGACGAGGCCAAGC
TCCGGGAGGATTTCGAAAAGCTCTTCCAAAGACTGCGGGCGTGAGGCTGA
AGGCGCCGGAGCAGGAAATGAGATGTGACTGTGCCGTGTTGACATGGGGT
GCCCCGATTGTGGGTGAAGGGCGAGGAAAGGCGGCGGAGAGCCAGGATGG
ACCCGGAGGGTCTCAGGCGCCGGGGACGATCGATGAGCATTTGTCAGAAG
ATGGACTCTGAGTTGAAAATAGAAAATTGGAGGACATTTGGAACATCGAT
GGGATCACAGATTTTGGCTGGGAGGCATTGCTTGCCGTGGGGGGGACGGG
CAAATGAGATATTGAGGTAGGAAGAAGCATGAGGGCTATCGCCGCGGATG
ATGTTGCTATGTTGGTCAGGCTTTTAAGCCATTAAACTACGAGCTTCCAC
ACATCCTTCCCACCGCGTTCTTTTTCTGGCTAGACAGTCATGATCTCTTT
CTCCTTCGACTTGAGCATCTCATCAAGTTGCTTCCCATACTTATCAGTCA
GCTTCTGCAGCGCCTCCTGCCCATTAGCGCTCTCGTCCTTCCCGATGGTT
TTGTCCTTCTCCAACTTCTTCACTCTCTCCACGGCGTCCCGTCGCACGTT
CCGCACGGCCACTTTCCCCTCCTCCGCCAGGCCCTTGGCCATCTTGCTCA
GCTCCTTCCTCCTGTCCTCCGTGAGGGGGGGAATGTTCAAGCGCAAAACG
CTTCCCTCGTTGTTCGGATTGAGACCCAGACTTGATTCTAGGATGGCGGT
TTCGATTAGCTTGAAGGCGCATTTGTCGTAAGGAGAGACCACCAAAGACT
GCGGGCCCGAGACAGAGACACCGGCAAGCTGATTTAAGGGCGTCGGGGAG
CCGAAGTAGTCGACCATCACTCGGTCAAGGAGGGTGACACTGGGGAAAAA
GGGTTACAGAGATCCTTAATGTGAGTACTCCGAAGACTATGACCCAAAGT
CTCGTACCAGACGTTGAAGAGGAGGCTCTACACGGCACGTGGCGCCAACA
GACTAACTTACGATGCCCGACCGGTGCGAATGCCCTTGAGGTTGTTATCG
GTTGAATCCACGCT

protein sequence of rna5585

>rna5585-protein ID=rna5585-protein|Name=rna5585|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTM
EGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSP
TPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVL
RLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTI
GKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV

mRNA from alignment at CM002466.1:344479..346088-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5585 ID=rna5585|Name=rna5585|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at CM002466.1:344479..346088- (Nannochloropsis gaditana)
CACACCACGATAACGCCCGTCTCGGACCACACCGCATTCATGGCCTCCAT
CACACGAGGAACAGTCAAAATAGTACTTGAGAAACTACGTTCGGTGCTCA
CGCGGCGCCGCCTGCTGGGAAAGAGCACACGCCCGCGCTAGATCTTGCAG
GTGGCCTTGCCCTTGAGCTCGCTGCCTGATCGTCGGGGTCACCCGGGTCG
GACATCCCGCTTTGGAAGCTTTCCAGTCCCTACTGCCACCAGGGGGCGAC
CCTCTCTGCTTTGCGCCATCCATGTCATCGACTTCGACGATTTCGTATGG
TAGGGTGTCTGGACTCAGCCTGGTTCACGCCCTTCTGTACCTTTGAACAG
TCGAGGAGCCATGAGGGCGTCTCCACCTTTATCCCTCTTGCTGGTCTTGC
TGACCGCGACAGACGCCTTTTTCATGGGCAGAATTGCGAGTACTTTGCAT
GGAGCACCTAAGTGTTCTTATTACACTAAAGCGATCGCCAGGTAAGGTGG
TAAAAAGGTGGTAAATGTAGCAAGGGCAGTCACGTATCCAATCACTGCCT
GCTCTCCCTTTTGATAGACGCATGGCCGTGACGATGGAGGGAGAAGTGGC
TGATATACAGAAGGAGGCTGAAATCAAGATGAAGAAGAGCGTGGATTCAA
CCGATAACAACCTCAAGGGCATTCGCACCGGTCGGGCATCGTAAGTTAGT
CTGTTGGCGCCACGTGCCGTGTAGAGCCTCCTCTTCAACGTCTGGTACGA
GACTTTGGGTCATAGTCTTCGGAGTACTCACATTAAGGATCTCTGTAACC
CTTTTTCCCCAGTGTCACCCTCCTTGACCGAGTGATGGTCGACTACTTCG
GCTCCCCGACGCCCTTAAATCAGCTTGCCGGTGTCTCTGTCTCGGGCCCG
CAGTCTTTGGTGGTCTCTCCTTACGACAAATGCGCCTTCAAGCTAATCGA
AACCGCCATCCTAGAATCAAGTCTGGGTCTCAATCCGAACAACGAGGGAA
GCGTTTTGCGCTTGAACATTCCCCCCCTCACGGAGGACAGGAGGAAGGAG
CTGAGCAAGATGGCCAAGGGCCTGGCGGAGGAGGGGAAAGTGGCCGTGCG
GAACGTGCGACGGGACGCCGTGGAGAGAGTGAAGAAGTTGGAGAAGGACA
AAACCATCGGGAAGGACGAGAGCGCTAATGGGCAGGAGGCGCTGCAGAAG
CTGACTGATAAGTATGGGAAGCAACTTGATGAGATGCTCAAGTCGAAGGA
GAAAGAGATCATGACTGTCTAGCCAGAAAAAGAACGCGGTGGGAAGGATG
TGTGGAAGCTCGTAGTTTAATGGCTTAAAAGCCTGACCAACATAGCAACA
TCATCCGCGGCGATAGCCCTCATGCTTCTTCCTACCTCAATATCTCATTT
GCCCGTCCCCCCCACGGCAAGCAATGCCTCCCAGCCAAAATCTGTGATCC
CATCGATGTTCCAAATGTCCTCCAATTTTCTATTTTCAACTCAGAGTCCA
TCTTCTGACAAATGCTCATCGATCGTCCCCGGCGCCTGAGACCCTCCGGG
TCCATCCTGGCTCTCCGCCGCCTTTCCTCGCCCTTCACCCACAATCGGGG
CACCCCATGT

Coding sequence (CDS) from alignment at CM002466.1:344479..346088-

>rna5585 ID=rna5585|Name=rna5585|organism=Nannochloropsis gaditana|type=CDS|length=2142bp|location=Sequence derived from alignment at CM002466.1:344479..346088- (Nannochloropsis gaditana)
TGTCACCCTCCTTGACCGAGTGATGGTCGACTACTTCGGCTCCCCGACGC
CCTTAAATCAGCTTGCCGGTGTCTCTGTCTCGGGCCCGCAGTCTTTGGTG
GTCTCTCCTTACGACAAATGCGCCTTCAAGCTAATCGAAACCGCCATCCT
AGAATCAAGTCTGGGTCTCAATCCGAACAACGAGGGAAGCGTTTTGCGCT
TGAACATTCCCCCCCTCACGGAGGACAGGAGGAAGGAGCTGAGCAAGATG
GCCAAGGGCCTGGCGGAGGAGGGGAAAGTGGCCGTGCGGAACGTGCGACG
GGACGCCGTGGAGAGAGTGAAGAAGTTGGAGAAGGACAAAACCATCGGGA
AGGACGAGAGCGCTAATGGGCAGGAGGCGCTGCAGAAGCTGACTGATAAG
TATGGGAAGCAACTTGATGAGATGCTCAAGTCGAAGGAGAAAGAGATCAT
GACTGTCTAGACGCATGGCCGTGACGATGGAGGGAGAAGTGGCTGATATA
CAGAAGGAGGCTGAAATCAAGATGAAGAAGAGCGTGGATTCAACCGATAA
CAACCTCAAGGGCATTCGCACCGGTCGGGCATCATGAGGGCGTCTCCACC
TTTATCCCTCTTGCTGGTCTTGCTGACCGCGACAGACGCCTTTTTCATGG
GCAGAATTGCGAGTACTTTGCATGGAGCACCTAAGTGTTCTTATTACACT
AAAGCGATCGCCAGTGTCACCCTCCTTGACCGAGTGATGGTCGACTACTT
CGGCTCCCCGACGCCCTTAAATCAGCTTGCCGGTGTCTCTGTCTCGGGCC
CGCAGTCTTTGGTGGTCTCTCCTTACGACAAATGCGCCTTCAAGCTAATC
GAAACCGCCATCCTAGAATCAAGTCTGGGTCTCAATCCGAACAACGAGGG
AAGCGTTTTGCGCTTGAACATTCCCCCCCTCACGGAGGACAGGAGGAAGG
AGCTGAGCAAGATGGCCAAGGGCCTGGCGGAGGAGGGGAAAGTGGCCGTG
CGGAACGTGCGACGGGACGCCGTGGAGAGAGTGAAGAAGTTGGAGAAGGA
CAAAACCATCGGGAAGGACGAGAGCGCTAATGGGCAGGAGGCGCTGCAGA
AGCTGACTGATAAGTATGGGAAGCAACTTGATGAGATGCTCAAGTCGAAG
GAGAAAGAGATCATGACTGTCTAGACGCATGGCCGTGACGATGGAGGGAG
AAGTGGCTGATATACAGAAGGAGGCTGAAATCAAGATGAAGAAGAGCGTG
GATTCAACCGATAACAACCTCAAGGGCATTCGCACCGGTCGGGCATCATG
AGGGCGTCTCCACCTTTATCCCTCTTGCTGGTCTTGCTGACCGCGACAGA
CGCCTTTTTCATGGGCAGAATTGCGAGTACTTTGCATGGAGCACCTAAGT
GTTCTTATTACACTAAAGCGATCGCCAGTGTCACCCTCCTTGACCGAGTG
ATGGTCGACTACTTCGGCTCCCCGACGCCCTTAAATCAGCTTGCCGGTGT
CTCTGTCTCGGGCCCGCAGTCTTTGGTGGTCTCTCCTTACGACAAATGCG
CCTTCAAGCTAATCGAAACCGCCATCCTAGAATCAAGTCTGGGTCTCAAT
CCGAACAACGAGGGAAGCGTTTTGCGCTTGAACATTCCCCCCCTCACGGA
GGACAGGAGGAAGGAGCTGAGCAAGATGGCCAAGGGCCTGGCGGAGGAGG
GGAAAGTGGCCGTGCGGAACGTGCGACGGGACGCCGTGGAGAGAGTGAAG
AAGTTGGAGAAGGACAAAACCATCGGGAAGGACGAGAGCGCTAATGGGCA
GGAGGCGCTGCAGAAGCTGACTGATAAGTATGGGAAGCAACTTGATGAGA
TGCTCAAGTCGAAGGAGAAAGAGATCATGACTGTCTAGACGCATGGCCGT
GACGATGGAGGGAGAAGTGGCTGATATACAGAAGGAGGCTGAAATCAAGA
TGAAGAAGAGCGTGGATTCAACCGATAACAACCTCAAGGGCATTCGCACC
GGTCGGGCATCATGAGGGCGTCTCCACCTTTATCCCTCTTGCTGGTCTTG
CTGACCGCGACAGACGCCTTTTTCATGGGCAGAATTGCGAGTACTTTGCA
TGGAGCACCTAAGTGTTCTTATTACACTAAAGCGATCGCCAG

Synonyms

Publications