EWM25103.1, cds5571 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|585106741|gb|EWM25103.1| (ribosome recycling factor [Nannochloropsis gaditana]) HSP 1 Score: 480.715 bits (1236), Expect = 1.206e-171 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query: 1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV
Sbjct: 1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|219127660|ref|XP_002184049.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 222.631 bits (566), Expect = 7.397e-70 Identity = 109/221 (49.32%), Postives = 151/221 (68.33%), Query Frame = 0
Query: 19 AFFMG--RIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
AF +G +++ P+ S +A+ V D+ +A +M KSVDS NL+ +RTGRAS +LDRV VDY+G TPLNQ+A +SV Q L + PYDK + IETAI+ES LGL NN+GS++R+NIP +TEDRRKE+ K+ K + EEGKVAVRN+RRD ++ +KK+EK IG+DE +GQ+ +QKLTDK K++DE++ +KEKE+M V
Sbjct: 5 AFLLGLVSLSAAFTPQPRISLGARAVCGTTLYAAVASVKDVTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|971071464|ref|WP_058881651.1| (ribosome-recycling factor [Oscillatoriales cyanobacterium MTP1]) HSP 1 Score: 212.231 bits (539), Expect = 2.194e-66 Identity = 100/178 (56.18%), Postives = 134/178 (75.28%), Query Frame = 0
Query: 60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
+ E M+K+++ST + IRTGRA+ +LLDRVMVDY+GSPTPL LAG+S ++++ PYD+ +IE AIL S +GL PNN+G+V+RLNIPPLT DRRKEL K+A AEEGKVA+RN+RRDAVE V+K EK I +DE+ + Q+++QKLTDKY ++D +LK KE +I TV
Sbjct: 5 DVEANMQKTIESTQRSFNTIRTGRANASLLDRVMVDYYGSPTPLKSLAGISTPDSSTILIQPYDRNTLNIIEKAILTSDVGLTPNNDGAVIRLNIPPLTSDRRKELVKVAAKYAEEGKVAIRNIRRDAVESVRKQEKGGEISEDEAKDLQDSIQKLTDKYVSKIDALLKEKETDITTV 182
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|219130047|ref|XP_002185186.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 211.846 bits (538), Expect = 2.292e-66 Identity = 100/173 (57.80%), Postives = 132/173 (76.30%), Query Frame = 0
Query: 65 MKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
M KSVDS NL+ +RTGRAS +LDRV VDY+G TPLNQ+A +SV Q L + PYDK + IETAI+ES LGL NN+GS++R+NIP +TEDRRKE+ K+ K + EEGKVAVRN+RRD ++ +KK+EK IG+DE +GQ+ +QKLTDK K++DE++ +KEKE+M V
Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1210516899|dbj|GAX24388.1| (ribosome recycling factor [Fistulifera solaris]) HSP 1 Score: 212.616 bits (540), Expect = 6.612e-66 Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 0
Query: 1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGA---PKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
M+A SL +L T AF I+ H A C + A T++ EV D +A+ +M KSV+S NL IRTGRAS ++LDR+ VDY+G TPLNQ+A +SV Q L V PYDK I+ AI ES LG++PNN+G+++R+NIP LTEDRRK++ K K + EEGKVAVRNVRRD ++ +KKLEK TIGKDE +G + +QK+TDK K++DE++ KEKE+ V
Sbjct: 1 MKAFQIFSLFTILWTTALAFSTAPISLRNHRAFVSDSCLW---------AETIK-EVTD---DADTRMSKSVESVKTNLATIRTGRASASILDRIKVDYYGVATPLNQMATISVPSAQQLAVDPYDKSTMNDIQKAIAESDLGVSPNNDGTIIRINIPELTEDRRKDMMKQCKSIGEEGKVAVRNVRRDGMDLIKKLEKAATIGKDEMQDGLDLMQKMTDKRVKEIDEIVAKKEKELSKV 227
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1208980315|ref|WP_088241448.1| (ribosome recycling factor [Calothrix rhizosoleniae]) HSP 1 Score: 210.305 bits (534), Expect = 1.230e-65 Identity = 100/178 (56.18%), Postives = 135/178 (75.84%), Query Frame = 0
Query: 60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
EAE M+K++D+T + IRTGRA+ +LLD+VMVDY+G+PT L LA ++ ++++ PYD+ + LIE AI S LGL P+N+GSV+RLNIPPLT DRRKEL K+A AEEGKVA+RN+RRDAV+ ++K EK+ I KDES + Q+ +QKLTDKY K++DE+L KEK+I TV
Sbjct: 5 EAESTMQKTIDATKRSFNTIRTGRANTSLLDKVMVDYYGAPTSLKTLANINTPDASTIMIQPYDRGSMNLIEKAISLSDLGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNIRRDAVDSIRKQEKNSEISKDESRDQQDDIQKLTDKYIKKIDELLADKEKDIATV 182
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|763401308|ref|WP_044258197.1| (ribosome-recycling factor [Richelia intracellularis]) HSP 1 Score: 207.994 bits (528), Expect = 1.067e-64 Identity = 97/178 (54.49%), Postives = 133/178 (74.72%), Query Frame = 0
Query: 60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
EAEI MKK++++T + IRTGRA+ +LLD+VMVDY+G+PTPL L +S ++++ PYD+ + L+E AI S +GL P+N+GSV+RLNIPPLT DRRKEL K+A AEEGKV++RN+RRD +E ++K EK+ I KDES + Q+ LQKLT KY ++DE+L KEK+I TV
Sbjct: 5 EAEITMKKTIEATQRSFNTIRTGRANASLLDKVMVDYYGAPTPLKSLTNISTPDASTIIIQPYDRGSMNLVEKAISMSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVSIRNIRRDTMEDIRKQEKNSEISKDESRDKQDNLQKLTSKYTAKIDELLIEKEKDITTV 182
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1186532758|ref|WP_085433800.1| (ribosome recycling factor [unicellular cyanobacterium SU2]) HSP 1 Score: 207.608 bits (527), Expect = 1.724e-64 Identity = 100/178 (56.18%), Postives = 134/178 (75.28%), Query Frame = 0
Query: 60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
E E M+KSV++T + IRTGRA+ +LLDRVMVDY+G+ TPLNQLA + ++ + PYDK + IE AI S +GL PNN+G V+RLNIPPLTE+RRKEL K+A LAEEGKV++RN+RRD+++ V+K EK+ I +DES N Q+ +QK TDK+ ++DE+LK KEK+IMTV
Sbjct: 4 ELEDHMQKSVEATQRSFNTIRTGRANASLLDRVMVDYYGTETPLNQLANIGTPDATTITILPYDKGSMGAIEKAITLSDIGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVSIRNIRRDSIDTVRKQEKNNDISEDESRNLQDEIQKTTDKFTTKIDELLKIKEKDIMTV 181
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|495509537|ref|WP_008234183.1| (ribosome-recycling factor [Richelia intracellularis] >gi|471330359|emb|CCH67502.1| Ribosome recycling factor [Richelia intracellularis HH01]) HSP 1 Score: 207.223 bits (526), Expect = 2.053e-64 Identity = 97/178 (54.49%), Postives = 132/178 (74.16%), Query Frame = 0
Query: 60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
EAEI MKK++++T + IRTGRA+ +LLD+VMVDY+G+PTPL L +S ++++ PYD+ L+E AI S +GL P+N+GSV+RLNIPPLT DRRKEL K+A AEEGKV++RN+RRD +E ++K EK+ I KDES + Q+ LQKLT KY ++DE+L KEK+I TV
Sbjct: 5 EAEITMKKTIEATQRSFNTIRTGRANASLLDKVMVDYYGAPTPLKSLTNISTPDASTIIIQPYDRGIMNLVEKAISMSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVSIRNIRRDTMEYIRKQEKNSEISKDESRDKQDNLQKLTSKYTAKIDELLIEKEKDITTV 182
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1083727235|gb|OGI10275.1| (ribosome recycling factor [Candidatus Melainabacteria bacterium RIFCSPLOWO2_12_FULL_35_11] >gi|1083731273|gb|OGI14182.1| ribosome recycling factor [Candidatus Melainabacteria bacterium RIFCSPLOWO2_02_FULL_35_15]) HSP 1 Score: 207.223 bits (526), Expect = 2.495e-64 Identity = 102/185 (55.14%), Postives = 135/185 (72.97%), Query Frame = 0
Query: 53 EVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
+ AD+ K E +MKK+V T L+ IRTGRA+ LLDRV+VDY+G+PTPL Q+A +S + LV+ PYDK + K IE AI +S G+ PNN+G+V+R+ +P LTE+RRK L K K +AE+ KV+VRN RRDA+E VKKLEKDK I +D+S QE +QK TDKY K++DE+ SKEKE+M V
Sbjct: 2 QAADVLKSVEEQMKKAVSLTQKELQAIRTGRANPGLLDRVVVDYYGAPTPLKQIANISTPDGKCLVIQPYDKSSLKDIEIAINKSDTGMTPNNDGNVIRIVVPALTEERRKSLVKDIKKIAEDNKVSVRNARRDALESVKKLEKDKAISEDQSKKEQEHIQKFTDKYSKEIDELTASKEKEVMVV 186 The following BLAST results are available for this feature:
BLAST of EWM25103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|