EWM25103.1, cds5571 (CDS) Nannochloropsis gaditana

Overview
NameEWM25103.1
Unique Namecds5571
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:345598..345728 -
Alignment locationCM002466.1:345399..345521 -
Alignment locationCM002466.1:344817..345276 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25103.1
Productribosome recycling factor
Orig transcript idgnl|cribi|Naga_100016g21.2912.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:345598..345728 -
CM002466.1supercontigCM002466.1:345399..345521 -
CM002466.1supercontigCM002466.1:344817..345276 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
Homology
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|585106741|gb|EWM25103.1| (ribosome recycling factor [Nannochloropsis gaditana])

HSP 1 Score: 480.715 bits (1236), Expect = 1.206e-171
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV
Sbjct:    1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|219127660|ref|XP_002184049.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 222.631 bits (566), Expect = 7.397e-70
Identity = 109/221 (49.32%), Postives = 151/221 (68.33%), Query Frame = 0
Query:   19 AFFMG--RIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            AF +G   +++     P+ S   +A+           V D+  +A  +M KSVDS   NL+ +RTGRAS  +LDRV VDY+G  TPLNQ+A +SV   Q L + PYDK +   IETAI+ES LGL  NN+GS++R+NIP +TEDRRKE+ K+ K + EEGKVAVRN+RRD ++ +KK+EK   IG+DE  +GQ+ +QKLTDK  K++DE++ +KEKE+M V
Sbjct:    5 AFLLGLVSLSAAFTPQPRISLGARAVCGTTLYAAVASVKDVTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|971071464|ref|WP_058881651.1| (ribosome-recycling factor [Oscillatoriales cyanobacterium MTP1])

HSP 1 Score: 212.231 bits (539), Expect = 2.194e-66
Identity = 100/178 (56.18%), Postives = 134/178 (75.28%), Query Frame = 0
Query:   60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            + E  M+K+++ST  +   IRTGRA+ +LLDRVMVDY+GSPTPL  LAG+S     ++++ PYD+    +IE AIL S +GL PNN+G+V+RLNIPPLT DRRKEL K+A   AEEGKVA+RN+RRDAVE V+K EK   I +DE+ + Q+++QKLTDKY  ++D +LK KE +I TV
Sbjct:    5 DVEANMQKTIESTQRSFNTIRTGRANASLLDRVMVDYYGSPTPLKSLAGISTPDSSTILIQPYDRNTLNIIEKAILTSDVGLTPNNDGAVIRLNIPPLTSDRRKELVKVAAKYAEEGKVAIRNIRRDAVESVRKQEKGGEISEDEAKDLQDSIQKLTDKYVSKIDALLKEKETDITTV 182          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|219130047|ref|XP_002185186.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 211.846 bits (538), Expect = 2.292e-66
Identity = 100/173 (57.80%), Postives = 132/173 (76.30%), Query Frame = 0
Query:   65 MKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            M KSVDS   NL+ +RTGRAS  +LDRV VDY+G  TPLNQ+A +SV   Q L + PYDK +   IETAI+ES LGL  NN+GS++R+NIP +TEDRRKE+ K+ K + EEGKVAVRN+RRD ++ +KK+EK   IG+DE  +GQ+ +QKLTDK  K++DE++ +KEKE+M V
Sbjct:    1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1210516899|dbj|GAX24388.1| (ribosome recycling factor [Fistulifera solaris])

HSP 1 Score: 212.616 bits (540), Expect = 6.612e-66
Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 0
Query:    1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGA---PKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            M+A    SL  +L T   AF    I+   H A     C +         A T++ EV D   +A+ +M KSV+S   NL  IRTGRAS ++LDR+ VDY+G  TPLNQ+A +SV   Q L V PYDK     I+ AI ES LG++PNN+G+++R+NIP LTEDRRK++ K  K + EEGKVAVRNVRRD ++ +KKLEK  TIGKDE  +G + +QK+TDK  K++DE++  KEKE+  V
Sbjct:    1 MKAFQIFSLFTILWTTALAFSTAPISLRNHRAFVSDSCLW---------AETIK-EVTD---DADTRMSKSVESVKTNLATIRTGRASASILDRIKVDYYGVATPLNQMATISVPSAQQLAVDPYDKSTMNDIQKAIAESDLGVSPNNDGTIIRINIPELTEDRRKDMMKQCKSIGEEGKVAVRNVRRDGMDLIKKLEKAATIGKDEMQDGLDLMQKMTDKRVKEIDEIVAKKEKELSKV 227          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1208980315|ref|WP_088241448.1| (ribosome recycling factor [Calothrix rhizosoleniae])

HSP 1 Score: 210.305 bits (534), Expect = 1.230e-65
Identity = 100/178 (56.18%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            EAE  M+K++D+T  +   IRTGRA+ +LLD+VMVDY+G+PT L  LA ++     ++++ PYD+ +  LIE AI  S LGL P+N+GSV+RLNIPPLT DRRKEL K+A   AEEGKVA+RN+RRDAV+ ++K EK+  I KDES + Q+ +QKLTDKY K++DE+L  KEK+I TV
Sbjct:    5 EAESTMQKTIDATKRSFNTIRTGRANTSLLDKVMVDYYGAPTSLKTLANINTPDASTIMIQPYDRGSMNLIEKAISLSDLGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNIRRDAVDSIRKQEKNSEISKDESRDQQDDIQKLTDKYIKKIDELLADKEKDIATV 182          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|763401308|ref|WP_044258197.1| (ribosome-recycling factor [Richelia intracellularis])

HSP 1 Score: 207.994 bits (528), Expect = 1.067e-64
Identity = 97/178 (54.49%), Postives = 133/178 (74.72%), Query Frame = 0
Query:   60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            EAEI MKK++++T  +   IRTGRA+ +LLD+VMVDY+G+PTPL  L  +S     ++++ PYD+ +  L+E AI  S +GL P+N+GSV+RLNIPPLT DRRKEL K+A   AEEGKV++RN+RRD +E ++K EK+  I KDES + Q+ LQKLT KY  ++DE+L  KEK+I TV
Sbjct:    5 EAEITMKKTIEATQRSFNTIRTGRANASLLDKVMVDYYGAPTPLKSLTNISTPDASTIIIQPYDRGSMNLVEKAISMSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVSIRNIRRDTMEDIRKQEKNSEISKDESRDKQDNLQKLTSKYTAKIDELLIEKEKDITTV 182          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1186532758|ref|WP_085433800.1| (ribosome recycling factor [unicellular cyanobacterium SU2])

HSP 1 Score: 207.608 bits (527), Expect = 1.724e-64
Identity = 100/178 (56.18%), Postives = 134/178 (75.28%), Query Frame = 0
Query:   60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            E E  M+KSV++T  +   IRTGRA+ +LLDRVMVDY+G+ TPLNQLA +      ++ + PYDK +   IE AI  S +GL PNN+G V+RLNIPPLTE+RRKEL K+A  LAEEGKV++RN+RRD+++ V+K EK+  I +DES N Q+ +QK TDK+  ++DE+LK KEK+IMTV
Sbjct:    4 ELEDHMQKSVEATQRSFNTIRTGRANASLLDRVMVDYYGTETPLNQLANIGTPDATTITILPYDKGSMGAIEKAITLSDIGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVSIRNIRRDSIDTVRKQEKNNDISEDESRNLQDEIQKTTDKFTTKIDELLKIKEKDIMTV 181          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|495509537|ref|WP_008234183.1| (ribosome-recycling factor [Richelia intracellularis] >gi|471330359|emb|CCH67502.1| Ribosome recycling factor [Richelia intracellularis HH01])

HSP 1 Score: 207.223 bits (526), Expect = 2.053e-64
Identity = 97/178 (54.49%), Postives = 132/178 (74.16%), Query Frame = 0
Query:   60 EAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            EAEI MKK++++T  +   IRTGRA+ +LLD+VMVDY+G+PTPL  L  +S     ++++ PYD+    L+E AI  S +GL P+N+GSV+RLNIPPLT DRRKEL K+A   AEEGKV++RN+RRD +E ++K EK+  I KDES + Q+ LQKLT KY  ++DE+L  KEK+I TV
Sbjct:    5 EAEITMKKTIEATQRSFNTIRTGRANASLLDKVMVDYYGAPTPLKSLTNISTPDASTIIIQPYDRGIMNLVEKAISMSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGKVSIRNIRRDTMEYIRKQEKNSEISKDESRDKQDNLQKLTSKYTAKIDELLIEKEKDITTV 182          
BLAST of EWM25103.1 vs. NCBI_GenBank
Match: gi|1083727235|gb|OGI10275.1| (ribosome recycling factor [Candidatus Melainabacteria bacterium RIFCSPLOWO2_12_FULL_35_11] >gi|1083731273|gb|OGI14182.1| ribosome recycling factor [Candidatus Melainabacteria bacterium RIFCSPLOWO2_02_FULL_35_15])

HSP 1 Score: 207.223 bits (526), Expect = 2.495e-64
Identity = 102/185 (55.14%), Postives = 135/185 (72.97%), Query Frame = 0
Query:   53 EVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
            + AD+ K  E +MKK+V  T   L+ IRTGRA+  LLDRV+VDY+G+PTPL Q+A +S    + LV+ PYDK + K IE AI +S  G+ PNN+G+V+R+ +P LTE+RRK L K  K +AE+ KV+VRN RRDA+E VKKLEKDK I +D+S   QE +QK TDKY K++DE+  SKEKE+M V
Sbjct:    2 QAADVLKSVEEQMKKAVSLTQKELQAIRTGRANPGLLDRVVVDYYGAPTPLKQIANISTPDGKCLVIQPYDKSSLKDIEIAINKSDTGMTPNNDGNVIRIVVPALTEERRKSLVKDIKKIAEDNKVSVRNARRDALESVKKLEKDKAISEDQSKKEQEHIQKFTDKYSKEIDELTASKEKEVMVV 186          
The following BLAST results are available for this feature:
BLAST of EWM25103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106741|gb|EWM25103.1|1.206e-171100.00ribosome recycling factor [Nannochloropsis gaditan... [more]
gi|219127660|ref|XP_002184049.1|7.397e-7049.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|971071464|ref|WP_058881651.1|2.194e-6656.18ribosome-recycling factor [Oscillatoriales cyanoba... [more]
gi|219130047|ref|XP_002185186.1|2.292e-6657.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516899|dbj|GAX24388.1|6.612e-6648.33ribosome recycling factor [Fistulifera solaris][more]
gi|1208980315|ref|WP_088241448.1|1.230e-6556.18ribosome recycling factor [Calothrix rhizosoleniae... [more]
gi|763401308|ref|WP_044258197.1|1.067e-6454.49ribosome-recycling factor [Richelia intracellulari... [more]
gi|1186532758|ref|WP_085433800.1|1.724e-6456.18ribosome recycling factor [unicellular cyanobacter... [more]
gi|495509537|ref|WP_008234183.1|2.053e-6454.49ribosome-recycling factor [Richelia intracellulari... [more]
gi|1083727235|gb|OGI10275.1|2.495e-6455.14ribosome recycling factor [Candidatus Melainabacte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5585rna5585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications